Wall clock time and date at job start Tue Mar 31 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 C 1.50700 * 109.47186 * 65.00419 * 4 2 1 6 6 H 1.08006 * 119.99859 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00453 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99526 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00414 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46963 * 59.99610 * 9 7 5 11 11 H 1.48503 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46677 * 299.99864 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 14 14 N 1.46895 * 109.47263 * 294.99750 * 13 2 1 15 15 C 1.46896 * 111.00506 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47534 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47183 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.00256 * 100.00398 * 17 16 15 19 19 C 1.38228 * 120.00815 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.02476 * 0.04519 * 19 18 17 21 21 C 1.38191 * 120.01866 * 359.97438 * 20 19 18 22 22 C 1.38332 * 120.00631 * 279.72983 * 17 16 15 23 23 Cl 1.73595 * 120.01588 * 359.97400 * 22 17 16 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46705 * 184.99884 * 4 2 1 28 28 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 29 29 H 0.97002 * 120.00026 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47500 * 54.99635 * 13 2 1 31 31 H 1.09000 * 109.47325 * 174.99723 * 13 2 1 32 32 H 1.00903 * 111.00211 * 303.95419 * 14 13 2 33 33 H 1.08998 * 109.47397 * 300.00190 * 15 14 13 34 34 H 1.09005 * 109.46862 * 60.00191 * 15 14 13 35 35 H 1.08998 * 109.47162 * 300.00613 * 16 15 14 36 36 H 1.09005 * 109.46661 * 60.00348 * 16 15 14 37 37 H 1.07999 * 119.99521 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.98297 * 180.02562 * 19 18 17 39 39 H 1.08005 * 119.98506 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.00613 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9931 -0.4019 -3.7283 8 7 2.6770 -1.5185 -3.8511 9 14 1.4996 0.5632 -5.2496 10 1 2.0918 1.9235 -5.1866 11 1 1.9944 -0.1371 -6.4621 12 1 0.0196 0.6699 -5.3095 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.7026 0.1911 4.8892 17 6 2.1887 -0.4904 6.1423 18 6 3.3347 -0.0426 6.7725 19 6 3.7805 -0.6672 7.9223 20 6 3.0810 -1.7406 8.4421 21 6 1.9354 -2.1893 7.8127 22 6 1.4851 -1.5604 6.6654 23 17 0.0416 -2.1183 5.8789 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7996 -1.2056 28 1 1.6053 -1.7199 -1.2951 29 1 2.9249 -1.8411 -4.7316 30 1 1.6054 -1.7198 1.2952 31 1 3.1264 -0.7995 1.2056 32 1 1.9883 0.9873 2.3966 33 1 1.6904 -1.6248 3.7297 34 1 3.2118 -0.7050 3.6405 35 1 2.1373 1.1886 4.8264 36 1 0.6157 0.2694 4.9160 37 1 3.8819 0.7954 6.3665 38 1 4.6756 -0.3167 8.4145 39 1 3.4300 -2.2284 9.3402 40 1 1.3890 -3.0275 8.2192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602532246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:31 Heat of formation + Delta-G solvation = -11.318469 kcal Electronic energy + Delta-G solvation = -18809.146642 eV Core-core repulsion = 15841.290607 eV Total energy + Delta-G solvation = -2967.856034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76352 -37.02477 -36.58661 -34.74614 -32.82208 -31.59251 -31.00155 -28.34024 -26.68814 -25.02409 -23.15746 -23.00046 -21.98635 -21.20296 -18.99869 -17.29523 -16.30018 -16.16888 -15.71152 -15.29921 -14.67814 -14.31895 -14.21965 -14.05516 -13.65195 -13.46669 -13.12353 -12.53673 -12.26210 -12.04442 -11.85324 -11.66943 -11.61233 -11.40962 -11.35405 -10.98863 -10.84832 -10.81393 -10.67641 -10.26198 -10.20408 -9.65791 -9.22096 -9.10527 -8.96371 -8.84974 -8.29897 -8.08316 -5.94811 -3.95901 0.86102 0.95550 1.97490 3.31306 3.36296 3.40478 3.43113 4.24772 4.46524 4.50127 4.61356 4.79156 4.93254 5.05065 5.17439 5.22786 5.36256 5.40868 5.53581 5.64309 5.74898 5.81146 5.91935 5.97044 6.06147 6.09458 6.20340 6.23415 6.46463 6.49640 6.59629 6.73396 7.05573 7.22576 7.23760 7.39996 7.68671 7.73562 7.89235 8.05662 8.49684 9.10354 9.67219 11.16764 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035253 B = 0.002708 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.063493 B =10336.429742 C =10617.011504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.686 5.686 15 C 0.065 3.935 16 C -0.084 4.084 17 C -0.067 4.067 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.034 4.034 23 Cl -0.060 7.060 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.336 0.664 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 0.907 26.043 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.317 5.317 15 C -0.064 4.064 16 C -0.122 4.122 17 C -0.068 4.068 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.061 4.061 23 Cl -0.031 7.031 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.153 0.847 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.298 0.444 25.857 25.863 hybrid contribution 0.709 0.494 -0.981 1.308 sum 0.412 0.938 24.876 24.897 Atomic orbital electron populations 1.21587 0.95721 1.00563 1.00114 1.21197 0.96011 0.98872 0.94016 0.92851 1.19118 0.95877 0.95587 0.90445 1.21209 1.34583 1.08286 0.91009 0.92617 1.25025 0.95363 0.95106 0.99085 1.69960 1.39055 1.21274 1.23455 0.86687 0.78910 0.80084 0.82491 1.20324 1.21389 1.20264 1.22143 0.97113 0.97750 0.89379 1.60504 1.64047 1.05673 1.01453 1.21870 0.97067 0.98498 0.89008 1.20664 1.02797 0.98423 0.90267 1.19828 0.94890 0.94947 0.97167 1.21092 0.95462 1.00327 0.95594 1.21251 0.99904 0.96005 0.96151 1.21101 0.95012 0.97152 1.00162 1.21075 0.97195 1.00179 0.94457 1.20910 0.91369 0.97771 0.96063 1.98395 1.36205 1.88529 1.79962 0.93912 0.92818 0.94207 0.96971 0.96569 0.93062 0.91584 0.95830 0.84685 0.90782 0.95663 0.90763 0.89282 0.85132 0.85481 0.85278 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.71 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.15 5.07 -3.83 -0.02 1.13 16 14 N -0.69 -10.10 5.95 -113.78 -0.68 -10.78 16 15 C 0.07 0.83 5.62 -3.83 -0.02 0.81 16 16 C -0.08 -0.89 5.06 -27.88 -0.14 -1.03 16 17 C -0.07 -0.68 5.14 -104.59 -0.54 -1.22 16 18 C -0.11 -0.92 9.67 -39.59 -0.38 -1.30 16 19 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 20 C -0.12 -0.86 10.04 -39.59 -0.40 -1.26 16 21 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 22 C -0.03 -0.36 6.31 -39.50 -0.25 -0.61 16 23 Cl -0.06 -0.67 26.66 -51.86 -1.38 -2.05 16 24 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 25 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.34 4.57 8.73 -39.29 -0.34 4.23 16 33 H 0.07 1.02 7.30 -51.93 -0.38 0.65 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.69 8.00 -51.93 -0.42 0.28 16 36 H 0.09 1.02 7.34 -51.93 -0.38 0.64 16 37 H 0.13 0.92 8.04 -52.49 -0.42 0.50 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -30.53 343.89 -10.54 -41.07 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.44 Total: -0.85 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.94 Total: -22.89 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.06 Total: -37.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.38 Total: -2.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.53 -10.54 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602532246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.752 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds