Wall clock time and date at job start Tue Mar 31 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 C 1.50700 * 109.47186 * 65.00419 * 4 2 1 6 6 H 1.08006 * 119.99859 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00453 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99526 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00414 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46963 * 59.99610 * 9 7 5 11 11 H 1.48503 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46677 * 299.99864 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 14 14 N 1.46895 * 109.47263 * 294.99750 * 13 2 1 15 15 C 1.46896 * 111.00506 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47534 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47183 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.00256 * 100.00398 * 17 16 15 19 19 C 1.38228 * 120.00815 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.02476 * 0.04519 * 19 18 17 21 21 C 1.38191 * 120.01866 * 359.97438 * 20 19 18 22 22 C 1.38332 * 120.00631 * 279.72983 * 17 16 15 23 23 Cl 1.73595 * 120.01588 * 359.97400 * 22 17 16 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46705 * 184.99884 * 4 2 1 28 28 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 29 29 H 0.97002 * 120.00026 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47500 * 54.99635 * 13 2 1 31 31 H 1.09000 * 109.47325 * 174.99723 * 13 2 1 32 32 H 1.00903 * 111.00211 * 303.95419 * 14 13 2 33 33 H 1.08998 * 109.47397 * 300.00190 * 15 14 13 34 34 H 1.09005 * 109.46862 * 60.00191 * 15 14 13 35 35 H 1.08998 * 109.47162 * 300.00613 * 16 15 14 36 36 H 1.09005 * 109.46661 * 60.00348 * 16 15 14 37 37 H 1.07999 * 119.99521 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.98297 * 180.02562 * 19 18 17 39 39 H 1.08005 * 119.98506 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.00613 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9931 -0.4019 -3.7283 8 7 2.6770 -1.5185 -3.8511 9 14 1.4996 0.5632 -5.2496 10 1 2.0918 1.9235 -5.1866 11 1 1.9944 -0.1371 -6.4621 12 1 0.0196 0.6699 -5.3095 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.7026 0.1911 4.8892 17 6 2.1887 -0.4904 6.1423 18 6 3.3347 -0.0426 6.7725 19 6 3.7805 -0.6672 7.9223 20 6 3.0810 -1.7406 8.4421 21 6 1.9354 -2.1893 7.8127 22 6 1.4851 -1.5604 6.6654 23 17 0.0416 -2.1183 5.8789 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7996 -1.2056 28 1 1.6053 -1.7199 -1.2951 29 1 2.9249 -1.8411 -4.7316 30 1 1.6054 -1.7198 1.2952 31 1 3.1264 -0.7995 1.2056 32 1 1.9883 0.9873 2.3966 33 1 1.6904 -1.6248 3.7297 34 1 3.2118 -0.7050 3.6405 35 1 2.1373 1.1886 4.8264 36 1 0.6157 0.2694 4.9160 37 1 3.8819 0.7954 6.3665 38 1 4.6756 -0.3167 8.4145 39 1 3.4300 -2.2284 9.3402 40 1 1.3890 -3.0275 8.2192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602532246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:31 Heat of formation + Delta-G solvation = -27.613148 kcal Electronic energy + Delta-G solvation = -18809.853232 eV Core-core repulsion = 15841.290607 eV Total energy + Delta-G solvation = -2968.562624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43162 -38.43820 -37.35444 -36.18012 -34.47175 -33.02116 -31.63829 -29.53486 -28.50656 -26.52640 -24.65025 -23.65237 -23.36676 -22.01262 -20.69691 -18.49067 -17.92139 -17.07267 -16.66052 -16.38692 -16.30031 -15.70034 -15.50766 -14.84089 -14.74007 -14.52560 -14.28554 -14.07103 -13.71493 -13.36294 -13.23715 -12.85051 -12.74468 -12.66466 -12.50709 -12.45093 -12.29567 -12.20233 -11.99045 -11.82740 -11.60000 -11.46893 -11.08952 -10.91402 -10.52712 -9.84060 -9.59018 -9.33367 -8.17026 -6.26414 0.20620 0.32064 1.23379 1.40340 1.43448 1.51047 2.42467 2.67095 3.16217 3.21880 3.80959 3.90489 4.04044 4.13841 4.22795 4.31198 4.37166 4.44554 4.48264 4.54137 4.58809 4.77715 4.87283 4.90928 4.92761 5.01919 5.04902 5.17576 5.28824 5.32404 5.46682 5.48026 5.50829 5.51727 5.56286 5.81381 5.89035 5.90315 6.04984 6.31334 6.53453 6.89524 7.41835 8.95032 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035253 B = 0.002708 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.063493 B =10336.429742 C =10617.011504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.057 0.943 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.078 3.922 14 N -0.683 5.683 15 C 0.070 3.930 16 C -0.074 4.074 17 C -0.085 4.085 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.052 4.052 23 Cl -0.078 7.078 24 H 0.067 0.933 25 H 0.038 0.962 26 H 0.031 0.969 27 H -0.014 1.014 28 H -0.013 1.013 29 H 0.262 0.738 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.346 0.654 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.672 2.332 27.439 27.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.051 4.051 14 N -0.314 5.314 15 C -0.059 4.059 16 C -0.111 4.111 17 C -0.086 4.086 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.079 4.079 23 Cl -0.049 7.049 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.004 0.996 28 H 0.006 0.994 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.019 1.885 27.276 27.341 hybrid contribution 0.681 0.017 -1.319 1.484 sum 0.662 1.902 25.957 26.035 Atomic orbital electron populations 1.21487 0.94761 1.00212 1.00572 1.21008 0.96652 0.98538 0.92987 0.92410 1.19013 0.94068 0.94632 0.92831 1.21622 1.34448 1.08639 0.92041 0.91967 1.25977 0.95256 0.96114 1.02720 1.70103 1.40279 1.23028 1.24347 0.85546 0.78926 0.78802 0.78064 1.19092 1.21049 1.19260 1.21827 0.96489 0.97223 0.89574 1.60410 1.64145 1.05979 1.00891 1.21840 0.96963 0.98195 0.88936 1.20524 1.02260 0.98803 0.89548 1.19860 0.95911 0.95473 0.97381 1.21353 0.94931 1.00809 0.95956 1.21622 1.00528 0.95512 0.95594 1.21479 0.94119 0.96885 1.00665 1.21322 0.97906 1.00538 0.94118 1.21110 0.91249 0.98574 0.96954 1.98383 1.37328 1.88762 1.80412 0.91389 0.94243 0.94972 0.99581 0.99420 0.92943 0.92590 0.96383 0.83582 0.92090 0.95511 0.89231 0.90267 0.83619 0.82819 0.82577 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.45 8.89 71.98 0.64 -3.81 16 2 C -0.07 -3.04 2.48 -10.79 -0.03 -3.07 16 3 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.37 8.41 25.60 0.22 -30.16 16 6 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 9 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 C 0.08 2.79 5.07 86.30 0.44 3.22 16 14 N -0.68 -19.42 5.95 -513.90 -3.06 -22.48 16 15 C 0.07 1.74 5.62 86.30 0.49 2.22 16 16 C -0.07 -1.49 5.06 29.85 0.15 -1.34 16 17 C -0.08 -1.63 5.14 -19.84 -0.10 -1.73 16 18 C -0.11 -1.69 9.67 22.27 0.22 -1.48 16 19 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 20 C -0.11 -1.39 10.04 22.26 0.22 -1.16 16 21 C -0.12 -1.93 9.83 22.29 0.22 -1.71 16 22 C -0.05 -1.05 6.31 22.33 0.14 -0.91 16 23 Cl -0.08 -1.74 26.66 -2.72 -0.07 -1.81 16 24 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 25 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H -0.01 -0.83 8.14 -2.38 -0.02 -0.84 16 28 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.35 8.81 8.73 -89.69 -0.78 8.03 16 33 H 0.06 1.69 7.30 -2.39 -0.02 1.67 16 34 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.09 1.50 8.00 -2.39 -0.02 1.48 16 36 H 0.08 1.75 7.34 -2.38 -0.02 1.74 16 37 H 0.15 1.66 8.04 -2.91 -0.02 1.64 16 38 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -66.26 343.89 2.82 -63.43 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.23 Total: 10.72 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 3.42 Total: -38.95 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.78 Total: -80.36 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -66.26 2.82 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602532246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.818 kcal (2) G-P(sol) polarization free energy of solvation -66.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds