Wall clock time and date at job start Tue Mar 31 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47528 * 2 1 4 4 C 1.50698 * 109.47326 * 239.99424 * 2 1 3 5 5 H 1.08005 * 119.99974 * 240.00366 * 4 2 1 6 6 C 1.37875 * 119.99934 * 60.00571 * 4 2 1 7 7 N 1.31519 * 120.00089 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46739 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47099 * 119.99638 * 8 6 4 11 11 H 1.48496 * 109.47199 * 240.00063 * 8 6 4 12 12 C 1.53008 * 109.46615 * 119.99689 * 2 1 3 13 13 N 1.46496 * 109.47029 * 299.99708 * 12 2 1 14 14 C 1.34774 * 119.99930 * 180.27452 * 13 12 2 15 15 O 1.21597 * 120.00249 * 359.72528 * 14 13 12 16 16 N 1.34775 * 120.00260 * 179.72524 * 14 13 12 17 17 C 1.40100 * 120.00061 * 175.32282 * 16 14 13 18 18 C 1.39314 * 120.45449 * 34.97000 * 17 16 14 19 19 C 1.38424 * 118.39206 * 179.97438 * 18 17 16 20 20 C 1.38572 * 119.20980 * 359.97438 * 19 18 17 21 21 F 1.35092 * 119.57370 * 180.02562 * 20 19 18 22 22 N 1.32011 * 120.85296 * 0.02562 * 20 19 18 23 23 C 1.31908 * 121.75548 * 359.70174 * 22 20 19 24 24 H 1.09002 * 109.46976 * 300.00849 * 1 2 3 25 25 H 1.09005 * 109.46461 * 60.00082 * 1 2 3 26 26 H 1.08997 * 109.47700 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47379 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46727 * 299.99755 * 3 2 1 29 29 H 1.09002 * 109.47226 * 59.99313 * 3 2 1 30 30 H 0.96992 * 120.00314 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46554 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.47193 * 60.00086 * 12 2 1 33 33 H 0.97003 * 120.00611 * 0.02562 * 13 12 2 34 34 H 0.97000 * 119.99910 * 355.33182 * 16 14 13 35 35 H 1.08000 * 120.80146 * 359.97372 * 18 17 16 36 36 H 1.07999 * 120.39523 * 179.97438 * 19 18 17 37 37 H 1.07993 * 119.64890 * 180.29667 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8295 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 3.1475 -2.2866 -3.6035 10 1 1.1680 -1.5869 -4.8164 11 1 3.1475 -0.1861 -4.8159 12 6 2.0399 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8816 -0.4877 3.6696 15 8 2.5806 -1.4764 3.7813 16 7 1.4369 0.1510 4.7699 17 6 1.6973 -0.3787 6.0405 18 6 2.8960 -1.0404 6.2976 19 6 3.1091 -1.5466 7.5683 20 6 2.1310 -1.3793 8.5356 21 9 2.3315 -1.8698 9.7783 22 7 1.0059 -0.7467 8.2585 23 6 0.7678 -0.2457 7.0617 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 0.7084 1.1607 -3.4844 31 1 3.1299 -0.7208 1.2496 32 1 1.6765 -1.7489 1.2494 33 1 0.9936 0.7580 2.3564 34 1 0.9365 0.9773 4.6821 35 1 3.6409 -1.1558 5.5242 36 1 4.0266 -2.0656 7.8030 37 1 -0.1624 0.2696 6.8737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838985314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:15 Heat of formation + Delta-G solvation = -35.158329 kcal Electronic energy + Delta-G solvation = -21376.428760 eV Core-core repulsion = 17875.662233 eV Total energy + Delta-G solvation = -3500.766527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.08938 -40.90768 -39.37776 -36.71670 -34.94575 -33.55901 -32.48947 -31.06112 -29.48786 -25.81828 -25.74894 -25.04408 -24.26154 -23.23502 -20.93872 -18.97750 -18.83255 -18.14026 -17.57892 -17.03982 -16.17293 -15.90987 -15.34198 -14.88278 -14.82686 -14.67381 -14.02723 -13.87072 -13.55697 -13.23157 -13.03867 -12.93670 -12.91337 -12.29138 -11.53074 -11.29090 -11.02065 -10.86938 -10.72124 -10.47754 -10.35653 -10.20911 -10.07364 -9.73700 -9.66007 -9.42394 -8.87375 -8.73013 -8.45895 -8.24787 -6.09412 -4.19698 0.67944 0.95761 2.59597 3.13914 3.22856 3.31929 3.36324 3.45927 3.51455 4.21353 4.34384 4.46399 4.62215 4.68046 5.08001 5.17886 5.28425 5.74480 5.86513 6.03197 6.11002 6.22350 6.38802 6.56431 6.63339 6.72158 6.72703 6.87091 6.92585 6.99915 7.26832 7.40242 7.46716 7.62666 7.92469 8.00708 8.12315 8.30476 8.63975 8.81422 9.46775 10.92112 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.048605 B = 0.003030 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.936306 B = 9240.058610 C = 9555.787282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.148 3.852 13 N -0.722 5.722 14 C 0.697 3.303 15 O -0.582 6.582 16 N -0.686 5.686 17 C 0.120 3.880 18 C -0.052 4.052 19 C -0.170 4.170 20 C 0.277 3.723 21 F -0.117 7.117 22 N -0.495 5.495 23 C 0.105 3.895 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.397 0.603 34 H 0.410 0.590 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 1.616 15.484 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.025 3.975 13 N -0.375 5.375 14 C 0.397 3.603 15 O -0.460 6.460 16 N -0.335 5.335 17 C 0.021 3.979 18 C -0.080 4.080 19 C -0.192 4.192 20 C 0.122 3.878 21 F -0.096 7.096 22 N -0.209 5.209 23 C -0.056 4.056 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.246 0.754 35 H 0.182 0.818 36 H 0.168 0.832 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.260 0.881 15.988 16.014 hybrid contribution 0.368 0.136 -1.345 1.401 sum 0.628 1.017 14.643 14.691 Atomic orbital electron populations 1.21839 0.97698 0.99263 1.00091 1.18377 0.92853 0.92789 0.90425 1.21838 0.98647 0.98301 1.00092 1.21005 1.31579 1.12177 0.89786 0.92288 1.24878 0.94798 0.94901 0.98908 1.69802 1.36611 1.22766 1.23232 0.86506 0.78674 0.79760 0.82905 1.19711 1.21034 1.21031 1.21721 0.98130 0.95605 0.82027 1.45569 1.54686 1.33005 1.04287 1.16069 0.80726 0.82921 0.80606 1.90894 1.42051 1.27500 1.85515 1.42622 1.60023 1.27921 1.02905 1.18571 0.94367 0.99222 0.85778 1.21793 0.95937 0.94286 0.96026 1.21802 1.00924 1.03673 0.92797 1.18087 0.91907 0.96642 0.81131 1.91601 1.94315 1.84833 1.38865 1.66935 1.20547 1.10913 1.22473 1.22264 0.98060 0.98753 0.86477 0.97570 0.89531 0.95357 0.95360 0.89531 0.97585 0.92992 0.92535 0.92531 0.76755 0.75402 0.81819 0.83247 0.81458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.77 8.08 37.16 0.30 -2.47 16 4 C -0.51 -12.73 8.01 -34.44 -0.28 -13.01 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.80 9.35 55.43 0.52 -22.29 16 8 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.15 2.90 4.50 -4.04 -0.02 2.88 16 13 N -0.72 -11.37 4.96 -65.22 -0.32 -11.69 16 14 C 0.70 10.73 8.42 -86.92 -0.73 9.99 16 15 O -0.58 -10.92 13.82 5.28 0.07 -10.85 16 16 N -0.69 -7.65 5.36 -14.11 -0.08 -7.72 16 17 C 0.12 1.38 6.32 -83.50 -0.53 0.85 16 18 C -0.05 -0.64 8.81 -39.11 -0.34 -0.98 16 19 C -0.17 -1.84 10.08 -39.39 -0.40 -2.24 16 20 C 0.28 3.36 8.40 -17.35 -0.15 3.21 16 21 F -0.12 -1.42 17.29 2.25 0.04 -1.38 16 22 N -0.49 -6.16 10.37 -13.45 -0.14 -6.30 16 23 C 0.10 1.09 11.12 -17.34 -0.19 0.90 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.05 6.07 -51.93 -0.32 1.74 16 29 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.40 5.46 6.18 -40.82 -0.25 5.21 16 34 H 0.41 3.15 8.84 -40.82 -0.36 2.79 16 35 H 0.16 2.18 6.32 -52.49 -0.33 1.85 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -28.50 311.42 -6.81 -35.30 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.37 Total: 5.73 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.20 Total: -0.60 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.02 Total: -48.00 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.50 -6.81 -35.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838985314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.145 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds