Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46909 * 110.99937 * 2 1 4 4 C 1.40090 * 111.00484 * 236.05014 * 2 1 3 5 5 C 1.38796 * 120.01164 * 59.71837 * 4 2 1 6 6 C 1.38118 * 120.01997 * 179.77181 * 5 4 2 7 7 C 1.38831 * 120.04035 * 0.50760 * 6 5 4 8 8 N 1.40183 * 119.99136 * 179.76580 * 7 6 5 9 9 C 1.34776 * 120.00200 * 213.26676 * 8 7 6 10 10 O 1.21596 * 120.00318 * 5.31263 * 9 8 7 11 11 N 1.34779 * 120.00164 * 185.32084 * 9 8 7 12 12 C 1.46495 * 120.00019 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47312 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99803 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00733 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99625 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00708 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46637 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47382 * 119.99599 * 17 15 13 20 20 H 1.48499 * 109.47130 * 240.00198 * 17 15 13 21 21 C 1.38836 * 120.02272 * 359.74810 * 7 6 5 22 22 C 1.38241 * 119.97846 * 359.97438 * 21 7 6 23 23 F 1.35105 * 120.02079 * 179.97438 * 22 21 7 24 24 H 1.09004 * 109.46938 * 183.94754 * 1 2 3 25 25 H 1.08999 * 109.46810 * 63.95644 * 1 2 3 26 26 H 1.08995 * 109.47074 * 303.95297 * 1 2 3 27 27 H 1.08997 * 109.46544 * 56.04556 * 3 2 1 28 28 H 1.08999 * 109.46828 * 176.04165 * 3 2 1 29 29 H 1.08997 * 109.46924 * 296.04976 * 3 2 1 30 30 H 1.08002 * 119.99002 * 0.02562 * 5 4 2 31 31 H 1.08003 * 119.98339 * 180.25475 * 6 5 4 32 32 H 0.97001 * 120.00092 * 33.27185 * 8 7 6 33 33 H 0.97000 * 119.99809 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.47328 * 299.99556 * 12 11 9 35 35 H 1.08996 * 109.47791 * 59.99433 * 12 11 9 36 36 H 0.97002 * 120.00029 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.01521 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9711 -0.7304 -1.0849 5 6 1.6542 -0.3527 -2.3823 6 6 2.1530 -1.0698 -3.4521 7 6 2.9632 -2.1753 -3.2306 8 7 3.4649 -2.9053 -4.3171 9 6 3.6444 -4.2367 -4.2092 10 8 3.2819 -4.8197 -3.2056 11 7 4.2260 -4.9219 -5.2135 12 6 4.4206 -6.3691 -5.0964 13 6 5.0858 -6.8893 -6.3446 14 1 5.3379 -6.2098 -7.1453 15 6 5.3725 -8.2325 -6.4646 16 7 5.0659 -9.0600 -5.4893 17 14 6.1976 -8.8771 -8.0115 18 1 6.4365 -7.7518 -8.9506 19 1 7.4935 -9.5086 -7.6550 20 1 5.3181 -9.8833 -8.6590 21 6 3.2770 -2.5578 -1.9334 22 6 2.7829 -1.8372 -0.8621 23 9 3.0873 -2.2090 0.4006 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 0.5739 0.8524 27 1 1.5897 1.9163 0.8524 28 1 3.0827 1.3433 0.0709 29 1 1.7043 1.8724 -0.9233 30 1 1.0207 0.5047 -2.5555 31 1 1.9094 -0.7729 -4.4616 32 1 3.6829 -2.4522 -5.1467 33 1 4.5150 -4.4569 -6.0142 34 1 5.0507 -6.5823 -4.2328 35 1 3.4541 -6.8568 -4.9700 36 1 5.2673 -10.0051 -5.5738 37 1 3.9076 -3.4175 -1.7613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880921427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -35.497496 kcal Electronic energy + Delta-G solvation = -21216.774322 eV Core-core repulsion = 17715.993088 eV Total energy + Delta-G solvation = -3500.781234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.62111 -40.38882 -39.12423 -36.83948 -34.32712 -33.90591 -32.35561 -30.61445 -29.05333 -27.82085 -27.08149 -24.65433 -22.89917 -22.75504 -21.26002 -20.36922 -18.42368 -18.06210 -16.83231 -16.46134 -15.98084 -15.66038 -15.62493 -14.87897 -14.80161 -14.73241 -14.52281 -14.12319 -13.95282 -13.41429 -13.07892 -12.81237 -12.69958 -12.41414 -12.06313 -12.03189 -11.94737 -11.85518 -11.46752 -10.98754 -10.96419 -10.36133 -10.10870 -9.60570 -9.42818 -8.81197 -8.77951 -8.74511 -8.18215 -7.81598 -6.20956 -4.28302 1.07695 1.19586 2.97646 3.21005 3.28490 3.31231 3.37261 3.61953 3.83633 4.26361 4.34694 4.67922 4.83790 4.91536 5.00927 5.05542 5.15492 5.19271 5.24957 5.32756 5.57771 5.60857 5.64489 5.74477 5.92686 6.15269 6.18103 6.50081 6.63254 6.84621 6.93267 7.21207 7.31660 7.43470 7.46700 7.74709 7.93165 8.60934 8.76862 9.09374 9.38642 10.89199 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.045457 B = 0.003001 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.813047 B = 9327.766481 C = 9665.147630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.504 5.504 3 C 0.029 3.971 4 C 0.016 3.984 5 C -0.099 4.099 6 C -0.159 4.159 7 C 0.214 3.786 8 N -0.694 5.694 9 C 0.688 3.312 10 O -0.578 6.578 11 N -0.719 5.719 12 C 0.265 3.735 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.157 4.157 22 C 0.148 3.852 23 F -0.126 7.126 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.406 0.594 33 H 0.389 0.611 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.266 0.734 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 21.307 5.022 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.225 5.225 3 C -0.117 4.117 4 C -0.079 4.079 5 C -0.120 4.120 6 C -0.180 4.180 7 C 0.117 3.883 8 N -0.342 5.342 9 C 0.389 3.611 10 O -0.456 6.456 11 N -0.371 5.371 12 C 0.144 3.856 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.179 4.179 22 C 0.127 3.873 23 F -0.105 7.105 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.242 0.758 33 H 0.222 0.778 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.572 20.187 6.434 22.183 hybrid contribution 0.405 0.267 -2.150 2.204 sum -6.168 20.454 4.284 21.789 Atomic orbital electron populations 1.22465 0.85844 1.02901 1.00654 1.59555 1.08502 1.14013 1.40391 1.22455 1.01150 0.87479 1.00659 1.18641 1.02376 0.97094 0.89824 1.21106 0.99568 0.99687 0.91592 1.20738 0.99810 0.97862 0.99636 1.17231 0.93016 0.91352 0.86746 1.42935 1.68600 1.07366 1.15323 1.16190 0.79735 0.80272 0.84944 1.90925 1.56067 1.67825 1.30752 1.45798 1.61474 1.11773 1.18016 1.19089 0.97235 0.71652 0.97634 1.21226 1.41170 0.93604 1.02249 0.91811 1.24949 0.95524 0.96573 0.96958 1.69987 1.46203 1.04068 1.31843 0.86338 0.79096 0.78936 0.82393 1.19656 1.20749 1.20770 1.21190 1.03950 1.02455 0.90286 1.17279 0.97088 0.93618 0.79305 1.91499 1.91195 1.90641 1.37138 0.90996 0.95073 0.90941 0.90964 0.91132 0.95123 0.85341 0.85141 0.75833 0.77816 0.95365 0.95422 0.92406 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.35 60.06 0.56 0.81 16 2 N -0.50 -5.62 4.83 -186.71 -0.90 -6.52 16 3 C 0.03 0.25 9.39 60.07 0.56 0.81 16 4 C 0.02 0.21 4.75 -83.57 -0.40 -0.19 16 5 C -0.10 -1.05 8.57 -39.42 -0.34 -1.39 16 6 C -0.16 -1.76 9.95 -39.41 -0.39 -2.15 16 7 C 0.21 3.05 6.28 -83.60 -0.53 2.53 16 8 N -0.69 -10.02 5.36 -14.18 -0.08 -10.09 16 9 C 0.69 13.56 8.30 -86.92 -0.72 12.84 16 10 O -0.58 -13.84 14.03 5.28 0.07 -13.76 16 11 N -0.72 -14.58 5.55 -66.41 -0.37 -14.95 16 12 C 0.26 6.86 5.43 -5.20 -0.03 6.83 16 13 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -25.72 13.29 55.43 0.74 -24.99 16 17 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.16 -2.54 8.63 -39.36 -0.34 -2.88 16 22 C 0.15 2.25 7.31 -39.28 -0.29 1.96 16 23 F -0.13 -2.07 17.07 2.25 0.04 -2.03 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.24 7.11 -51.93 -0.37 -0.13 16 26 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.22 7.36 -51.93 -0.38 -0.16 16 30 H 0.13 1.05 7.02 -52.49 -0.37 0.68 16 31 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.41 4.26 8.83 -40.82 -0.36 3.90 16 33 H 0.39 6.57 8.34 -40.82 -0.34 6.23 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.15 2.90 6.41 -52.49 -0.34 2.56 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -32.47 321.52 -7.64 -40.11 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.65 Total: 5.80 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -2.32 Total: 6.08 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.61 Total: -56.55 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.07 Total: -13.76 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.47 -7.64 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880921427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.616 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds