Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46909 * 110.99937 * 2 1 4 4 C 1.40090 * 111.00484 * 236.05014 * 2 1 3 5 5 C 1.38796 * 120.01164 * 59.71837 * 4 2 1 6 6 C 1.38118 * 120.01997 * 179.77181 * 5 4 2 7 7 C 1.38831 * 120.04035 * 0.50760 * 6 5 4 8 8 N 1.40183 * 119.99136 * 179.76580 * 7 6 5 9 9 C 1.34776 * 120.00200 * 213.26676 * 8 7 6 10 10 O 1.21596 * 120.00318 * 5.31263 * 9 8 7 11 11 N 1.34779 * 120.00164 * 185.32084 * 9 8 7 12 12 C 1.46495 * 120.00019 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47312 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99803 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00733 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99625 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00708 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46637 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47382 * 119.99599 * 17 15 13 20 20 H 1.48499 * 109.47130 * 240.00198 * 17 15 13 21 21 C 1.38836 * 120.02272 * 359.74810 * 7 6 5 22 22 C 1.38241 * 119.97846 * 359.97438 * 21 7 6 23 23 F 1.35105 * 120.02079 * 179.97438 * 22 21 7 24 24 H 1.09004 * 109.46938 * 183.94754 * 1 2 3 25 25 H 1.08999 * 109.46810 * 63.95644 * 1 2 3 26 26 H 1.08995 * 109.47074 * 303.95297 * 1 2 3 27 27 H 1.08997 * 109.46544 * 56.04556 * 3 2 1 28 28 H 1.08999 * 109.46828 * 176.04165 * 3 2 1 29 29 H 1.08997 * 109.46924 * 296.04976 * 3 2 1 30 30 H 1.08002 * 119.99002 * 0.02562 * 5 4 2 31 31 H 1.08003 * 119.98339 * 180.25475 * 6 5 4 32 32 H 0.97001 * 120.00092 * 33.27185 * 8 7 6 33 33 H 0.97000 * 119.99809 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.47328 * 299.99556 * 12 11 9 35 35 H 1.08996 * 109.47791 * 59.99433 * 12 11 9 36 36 H 0.97002 * 120.00029 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.01521 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9711 -0.7304 -1.0849 5 6 1.6542 -0.3527 -2.3823 6 6 2.1530 -1.0698 -3.4521 7 6 2.9632 -2.1753 -3.2306 8 7 3.4649 -2.9053 -4.3171 9 6 3.6444 -4.2367 -4.2092 10 8 3.2819 -4.8197 -3.2056 11 7 4.2260 -4.9219 -5.2135 12 6 4.4206 -6.3691 -5.0964 13 6 5.0858 -6.8893 -6.3446 14 1 5.3379 -6.2098 -7.1453 15 6 5.3725 -8.2325 -6.4646 16 7 5.0659 -9.0600 -5.4893 17 14 6.1976 -8.8771 -8.0115 18 1 6.4365 -7.7518 -8.9506 19 1 7.4935 -9.5086 -7.6550 20 1 5.3181 -9.8833 -8.6590 21 6 3.2770 -2.5578 -1.9334 22 6 2.7829 -1.8372 -0.8621 23 9 3.0873 -2.2090 0.4006 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 0.5739 0.8524 27 1 1.5897 1.9163 0.8524 28 1 3.0827 1.3433 0.0709 29 1 1.7043 1.8724 -0.9233 30 1 1.0207 0.5047 -2.5555 31 1 1.9094 -0.7729 -4.4616 32 1 3.6829 -2.4522 -5.1467 33 1 4.5150 -4.4569 -6.0142 34 1 5.0507 -6.5823 -4.2328 35 1 3.4541 -6.8568 -4.9700 36 1 5.2673 -10.0051 -5.5738 37 1 3.9076 -3.4175 -1.7613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880921427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -59.695192 kcal Electronic energy + Delta-G solvation = -21217.823613 eV Core-core repulsion = 17715.993088 eV Total energy + Delta-G solvation = -3501.830525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.82607 -41.70436 -40.30394 -37.94308 -36.18489 -35.24720 -34.27829 -31.66150 -30.32022 -28.86046 -28.47500 -25.77876 -24.52866 -23.94996 -22.45675 -21.81984 -20.01135 -19.29933 -18.13317 -17.74448 -17.41352 -17.05982 -16.75143 -16.50313 -16.37627 -15.70934 -15.63194 -15.34327 -15.13368 -14.98787 -14.35272 -14.08162 -13.95194 -13.71084 -13.48909 -13.14034 -12.90959 -12.87802 -12.76036 -12.61616 -12.49284 -12.21422 -11.46068 -11.42267 -11.20696 -10.83107 -9.96800 -9.85833 -9.50823 -9.06536 -8.29435 -6.45967 0.01699 0.15327 1.43575 1.45421 1.56918 1.63248 1.99743 2.38321 2.58277 2.80162 3.06205 3.18546 3.45825 3.77304 4.07879 4.14133 4.27497 4.39287 4.43367 4.64635 4.69300 4.74409 4.90956 5.00018 5.00922 5.02959 5.15817 5.20772 5.23835 5.33702 5.44035 5.60748 5.73393 5.81513 5.94828 6.12924 6.29775 6.65311 7.12948 7.24363 7.54562 8.83055 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.045457 B = 0.003001 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.813047 B = 9327.766481 C = 9665.147630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.529 5.529 3 C 0.029 3.971 4 C 0.029 3.971 5 C -0.087 4.087 6 C -0.132 4.132 7 C 0.190 3.810 8 N -0.669 5.669 9 C 0.690 3.310 10 O -0.627 6.627 11 N -0.712 5.712 12 C 0.283 3.717 13 C -0.553 4.553 14 H 0.087 0.913 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.986 3.014 18 H -0.251 1.251 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.179 4.179 22 C 0.117 3.883 23 F -0.144 7.144 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.429 0.571 33 H 0.409 0.591 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.269 0.731 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 24.584 2.558 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.251 5.251 3 C -0.117 4.117 4 C -0.066 4.066 5 C -0.108 4.108 6 C -0.153 4.153 7 C 0.094 3.906 8 N -0.319 5.319 9 C 0.390 3.610 10 O -0.507 6.507 11 N -0.365 5.365 12 C 0.160 3.840 13 C -0.591 4.591 14 H 0.105 0.895 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.175 1.175 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.202 4.202 22 C 0.096 3.904 23 F -0.122 7.122 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.187 0.813 31 H 0.189 0.811 32 H 0.269 0.731 33 H 0.245 0.755 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.078 0.922 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.428 23.571 3.940 25.026 hybrid contribution 0.592 -0.621 -1.249 1.515 sum -6.836 22.950 2.691 24.097 Atomic orbital electron populations 1.22518 0.84341 1.02463 1.02540 1.59515 1.09916 1.15517 1.40147 1.22518 1.00585 0.86102 1.02476 1.18816 1.00620 0.95750 0.91455 1.21526 0.98893 1.00176 0.90159 1.21120 0.96969 0.95347 1.01843 1.17436 0.94832 0.92825 0.85539 1.42471 1.67811 1.05184 1.16470 1.16299 0.79075 0.81846 0.83803 1.90905 1.57784 1.69502 1.32547 1.45306 1.62090 1.09873 1.19233 1.18489 0.94356 0.74632 0.96495 1.21619 1.40695 0.94277 1.02520 0.89520 1.26069 0.96047 0.96931 1.00607 1.70153 1.47723 1.04564 1.34540 0.85088 0.77519 0.78569 0.77885 1.17456 1.20622 1.20524 1.21004 1.04878 1.02074 0.92197 1.17568 0.99072 0.95314 0.78411 1.91440 1.91629 1.91069 1.38110 0.92672 0.93087 0.89117 0.89276 0.92178 0.93125 0.81338 0.81058 0.73143 0.75475 0.99418 0.99297 0.92243 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.35 127.69 1.19 1.61 16 2 N -0.53 -10.73 4.83 -744.62 -3.59 -14.32 16 3 C 0.03 0.41 9.39 127.69 1.20 1.61 16 4 C 0.03 0.69 4.75 38.15 0.18 0.87 16 5 C -0.09 -1.50 8.57 22.37 0.19 -1.31 16 6 C -0.13 -2.42 9.95 22.38 0.22 -2.20 16 7 C 0.19 5.27 6.28 38.09 0.24 5.50 16 8 N -0.67 -18.74 5.36 -317.03 -1.70 -20.44 16 9 C 0.69 28.01 8.30 179.05 1.49 29.50 16 10 O -0.63 -32.04 14.03 -4.02 -0.06 -32.10 16 11 N -0.71 -29.41 5.55 -482.29 -2.68 -32.09 16 12 C 0.28 15.40 5.43 85.63 0.46 15.87 16 13 C -0.55 -29.51 9.28 25.60 0.24 -29.27 16 14 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 17 Si 0.99 41.77 29.54 68.60 2.03 43.80 16 18 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.18 -6.16 8.63 22.41 0.19 -5.96 16 22 C 0.12 3.69 7.31 22.47 0.16 3.86 16 23 F -0.14 -5.06 17.07 44.97 0.77 -4.29 16 24 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.05 0.57 7.11 -2.39 -0.02 0.55 16 26 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 27 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.51 7.36 -2.39 -0.02 0.49 16 30 H 0.17 1.65 7.02 -2.91 -0.02 1.63 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.43 7.89 8.83 -92.71 -0.82 7.07 16 33 H 0.41 13.39 8.34 -92.71 -0.77 12.62 16 34 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.11 4.80 6.41 -2.91 -0.02 4.78 16 Total: -1.00 -76.54 321.52 0.81 -75.73 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -0.48 Total: 18.70 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 6.24 Total: 20.71 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -7.69 Total: -122.55 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.06 Total: -32.10 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.77 Total: -4.29 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -76.54 0.81 -75.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880921427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.040 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds