Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47310 * 2 1 4 4 F 1.39895 * 109.47062 * 239.99658 * 2 1 3 5 5 C 1.53004 * 109.46645 * 120.00171 * 2 1 3 6 6 C 1.53001 * 109.46911 * 184.99623 * 5 2 1 7 7 N 1.46503 * 109.47079 * 179.97438 * 6 5 2 8 8 C 1.34777 * 119.99813 * 180.02562 * 7 6 5 9 9 O 1.21573 * 120.00029 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00018 * 180.02562 * 8 7 6 11 11 C 1.39248 * 120.00407 * 185.78800 * 10 8 7 12 12 C 1.39681 * 119.56995 * 18.76828 * 11 10 8 13 13 C 1.38646 * 119.49286 * 180.02562 * 12 11 10 14 14 C 1.38360 * 118.67159 * 359.72559 * 13 12 11 15 15 C 1.40567 * 119.12760 * 0.53544 * 14 13 12 16 16 C 1.41335 * 119.78665 * 179.72895 * 15 14 13 17 17 H 1.07996 * 120.00106 * 8.66320 * 16 15 14 18 18 C 1.40026 * 119.99948 * 188.65820 * 16 15 14 19 19 N 1.30747 * 119.99730 * 195.96810 * 18 16 15 20 20 Si 1.86798 * 120.00021 * 15.96594 * 18 16 15 21 21 H 1.48500 * 109.47276 * 269.99741 * 20 18 16 22 22 H 1.48497 * 109.47183 * 29.99785 * 20 18 16 23 23 H 1.48501 * 109.47159 * 150.00195 * 20 18 16 24 24 N 1.31895 * 119.57654 * 198.78688 * 11 10 8 25 25 H 1.09001 * 109.47229 * 300.00393 * 1 2 3 26 26 H 1.09000 * 109.46807 * 59.99792 * 1 2 3 27 27 H 1.08996 * 109.47482 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47276 * 65.00072 * 5 2 1 29 29 H 1.08996 * 109.47022 * 304.99647 * 5 2 1 30 30 H 1.09004 * 109.47216 * 60.00078 * 6 5 2 31 31 H 1.09001 * 109.47087 * 300.00290 * 6 5 2 32 32 H 0.96991 * 119.99936 * 0.02562 * 7 6 5 33 33 H 0.96999 * 119.99891 * 5.78185 * 10 8 7 34 34 H 1.08004 * 120.25636 * 359.97438 * 12 11 10 35 35 H 1.08001 * 120.66691 * 179.97438 * 13 12 11 36 36 H 1.08002 * 120.43493 * 180.26318 * 14 13 12 37 37 H 0.96992 * 120.00510 * 354.92349 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0399 -0.7213 1.2493 6 6 3.5647 -0.6135 1.3137 7 7 4.0530 -1.3036 2.5103 8 6 5.3738 -1.3389 2.7760 9 8 6.1601 -0.7985 2.0226 10 7 5.8230 -1.9743 3.8764 11 6 7.1718 -1.9092 4.2162 12 6 7.9710 -0.8994 3.6751 13 6 9.3139 -0.8364 4.0140 14 6 9.8227 -1.7798 4.8890 15 6 8.9682 -2.7745 5.3954 16 6 9.4746 -3.7485 6.2856 17 1 10.4731 -3.6484 6.6845 18 6 8.6814 -4.8433 6.6504 19 7 9.0050 -5.5673 7.6899 20 14 7.1611 -5.2692 5.6521 21 1 5.9867 -4.5499 6.2075 22 1 7.3673 -4.8632 4.2387 23 1 6.9207 -6.7332 5.7166 24 7 7.6783 -2.8019 5.0445 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7515 -1.7716 1.2056 29 1 1.6053 -0.2618 2.1369 30 1 3.8532 0.4368 1.3574 31 1 3.9993 -1.0730 0.4260 32 1 3.4256 -1.7351 3.1111 33 1 5.2067 -2.4768 4.4318 34 1 7.5464 -0.1738 2.9971 35 1 9.9493 -0.0640 3.6065 36 1 10.8636 -1.7549 5.1758 37 1 9.8327 -5.3923 8.1643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = -63.111073 kcal Electronic energy + Delta-G solvation = -21235.030659 eV Core-core repulsion = 17733.052011 eV Total energy + Delta-G solvation = -3501.978649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.93420 -40.29534 -38.33718 -36.04727 -34.47445 -33.64778 -33.22890 -31.03088 -29.94561 -28.71125 -25.31740 -24.14076 -22.07339 -21.76370 -21.65659 -20.23503 -18.66032 -17.85868 -17.15561 -16.96346 -15.86288 -15.66111 -15.31432 -14.99696 -14.75290 -14.57126 -14.12824 -13.98908 -13.57715 -13.17158 -13.02819 -12.70597 -12.56946 -12.24141 -12.20507 -11.87760 -11.71755 -11.30056 -11.16751 -11.09856 -10.85566 -10.30179 -9.96683 -9.75319 -9.39599 -9.09791 -9.03179 -8.47839 -7.87864 -7.35077 -7.24275 -4.72448 2.42337 2.68416 2.72188 3.42157 3.47845 3.65138 3.90974 4.06635 4.19078 4.32139 4.34955 4.40498 4.56455 4.63459 4.84275 4.90994 5.13554 5.34393 5.45968 5.56811 5.58232 5.71431 5.80656 5.88523 6.12747 6.31958 6.46208 6.58649 6.70505 6.91987 7.21121 7.36994 7.47212 7.66560 7.80528 7.94157 8.22895 8.36908 8.66737 8.77290 9.47976 10.00050 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.003687 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.115385 B = 7591.995256 C = 8398.352160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 H 0.087 0.913 4 F -0.212 7.212 5 C -0.161 4.161 6 C 0.138 3.862 7 N -0.747 5.747 8 C 0.709 3.291 9 O -0.563 6.563 10 N -0.667 5.667 11 C 0.400 3.600 12 C -0.310 4.310 13 C -0.036 4.036 14 C -0.281 4.281 15 C 0.276 3.724 16 C -0.483 4.483 17 H 0.084 0.916 18 C 0.049 3.951 19 N -0.806 5.806 20 Si 1.144 2.856 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.327 1.327 24 N -0.597 5.597 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.396 0.604 33 H 0.403 0.597 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.649 8.730 -9.864 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.055 3.945 3 H 0.105 0.895 4 F -0.193 7.193 5 C -0.199 4.199 6 C 0.014 3.986 7 N -0.404 5.404 8 C 0.409 3.591 9 O -0.438 6.438 10 N -0.314 5.314 11 C 0.168 3.832 12 C -0.335 4.335 13 C -0.060 4.060 14 C -0.303 4.303 15 C 0.152 3.848 16 C -0.515 4.515 17 H 0.102 0.898 18 C -0.173 4.173 19 N -0.428 5.428 20 Si 0.977 3.023 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.260 1.260 24 N -0.322 5.322 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.230 0.770 33 H 0.238 0.762 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.624 7.585 -10.227 21.743 hybrid contribution 1.446 1.173 0.486 1.925 sum -16.178 8.758 -9.741 20.817 Atomic orbital electron populations 1.22379 0.94030 1.03751 1.03597 1.21461 0.94875 0.96400 0.81717 0.89472 1.92845 1.90246 1.83313 1.52882 1.22448 0.95861 1.02974 0.98591 1.21152 0.92273 0.97658 0.87564 1.45060 1.05794 1.61074 1.28451 1.15698 0.82381 0.79834 0.81236 1.90858 1.53802 1.50149 1.49036 1.42317 1.08764 1.53476 1.26850 1.17781 0.82114 0.90781 0.92510 1.21542 0.94794 1.04725 1.12413 1.20918 0.94436 0.96205 0.94473 1.21596 0.99792 1.01954 1.06971 1.18169 0.85323 0.91947 0.89389 1.20641 1.02521 1.05453 1.22860 0.89841 1.27643 1.04002 0.91592 0.94017 1.70613 1.22305 1.38130 1.11719 0.82122 0.72894 0.70991 0.76247 1.21628 1.20730 1.25982 1.66130 1.15659 1.27213 1.23210 0.90553 0.91268 0.91288 0.89828 0.89266 0.91276 0.90897 0.76980 0.76237 0.84230 0.87696 0.87751 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.65 37.16 0.36 -0.51 16 2 C 0.09 0.61 3.96 -26.73 -0.11 0.50 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 4 F -0.21 -2.13 16.76 2.25 0.04 -2.09 16 5 C -0.16 -1.04 5.10 -26.73 -0.14 -1.18 16 6 C 0.14 1.41 5.59 -4.04 -0.02 1.38 16 7 N -0.75 -8.86 5.56 -65.23 -0.36 -9.22 16 8 C 0.71 12.31 8.40 -86.92 -0.73 11.58 16 9 O -0.56 -11.75 13.14 5.30 0.07 -11.68 16 10 N -0.67 -12.60 5.42 -15.79 -0.09 -12.68 16 11 C 0.40 9.40 7.51 -155.00 -1.16 8.23 16 12 C -0.31 -7.21 8.83 -38.89 -0.34 -7.56 16 13 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 14 C -0.28 -6.85 9.83 -38.66 -0.38 -7.23 16 15 C 0.28 7.37 6.27 -85.00 -0.53 6.84 16 16 C -0.48 -13.28 9.51 -37.73 -0.36 -13.64 16 17 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 18 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16 19 N -0.81 -21.96 13.65 55.55 0.76 -21.20 16 20 Si 1.14 27.79 25.93 -169.99 -4.41 23.38 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -7.04 6.55 56.52 0.37 -6.67 16 23 H -0.33 -7.80 7.11 56.52 0.40 -7.40 16 24 N -0.60 -15.36 5.07 -10.26 -0.05 -15.41 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 32 H 0.40 3.45 8.49 -40.82 -0.35 3.10 16 33 H 0.40 6.52 8.84 -40.82 -0.36 6.16 16 34 H 0.14 3.21 5.33 -52.50 -0.28 2.93 16 35 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.28 7.41 8.73 -40.82 -0.36 7.06 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -32.76 317.09 -7.99 -40.75 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.81 Total: 4.92 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.91 Total: -1.55 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.26 Total: -58.51 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 27.79 SS G_CDS: -4.41 Total: 23.38 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.76 -7.99 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.361 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds