Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47310 * 2 1 4 4 F 1.39895 * 109.47062 * 239.99658 * 2 1 3 5 5 C 1.53004 * 109.46645 * 120.00171 * 2 1 3 6 6 C 1.53001 * 109.46911 * 184.99623 * 5 2 1 7 7 N 1.46503 * 109.47079 * 179.97438 * 6 5 2 8 8 C 1.34777 * 119.99813 * 180.02562 * 7 6 5 9 9 O 1.21573 * 120.00029 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00018 * 180.02562 * 8 7 6 11 11 C 1.39248 * 120.00407 * 185.78800 * 10 8 7 12 12 C 1.39681 * 119.56995 * 18.76828 * 11 10 8 13 13 C 1.38646 * 119.49286 * 180.02562 * 12 11 10 14 14 C 1.38360 * 118.67159 * 359.72559 * 13 12 11 15 15 C 1.40567 * 119.12760 * 0.53544 * 14 13 12 16 16 C 1.41335 * 119.78665 * 179.72895 * 15 14 13 17 17 H 1.07996 * 120.00106 * 8.66320 * 16 15 14 18 18 C 1.40026 * 119.99948 * 188.65820 * 16 15 14 19 19 N 1.30747 * 119.99730 * 195.96810 * 18 16 15 20 20 Si 1.86798 * 120.00021 * 15.96594 * 18 16 15 21 21 H 1.48500 * 109.47276 * 269.99741 * 20 18 16 22 22 H 1.48497 * 109.47183 * 29.99785 * 20 18 16 23 23 H 1.48501 * 109.47159 * 150.00195 * 20 18 16 24 24 N 1.31895 * 119.57654 * 198.78688 * 11 10 8 25 25 H 1.09001 * 109.47229 * 300.00393 * 1 2 3 26 26 H 1.09000 * 109.46807 * 59.99792 * 1 2 3 27 27 H 1.08996 * 109.47482 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47276 * 65.00072 * 5 2 1 29 29 H 1.08996 * 109.47022 * 304.99647 * 5 2 1 30 30 H 1.09004 * 109.47216 * 60.00078 * 6 5 2 31 31 H 1.09001 * 109.47087 * 300.00290 * 6 5 2 32 32 H 0.96991 * 119.99936 * 0.02562 * 7 6 5 33 33 H 0.96999 * 119.99891 * 5.78185 * 10 8 7 34 34 H 1.08004 * 120.25636 * 359.97438 * 12 11 10 35 35 H 1.08001 * 120.66691 * 179.97438 * 13 12 11 36 36 H 1.08002 * 120.43493 * 180.26318 * 14 13 12 37 37 H 0.96992 * 120.00510 * 354.92349 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0399 -0.7213 1.2493 6 6 3.5647 -0.6135 1.3137 7 7 4.0530 -1.3036 2.5103 8 6 5.3738 -1.3389 2.7760 9 8 6.1601 -0.7985 2.0226 10 7 5.8230 -1.9743 3.8764 11 6 7.1718 -1.9092 4.2162 12 6 7.9710 -0.8994 3.6751 13 6 9.3139 -0.8364 4.0140 14 6 9.8227 -1.7798 4.8890 15 6 8.9682 -2.7745 5.3954 16 6 9.4746 -3.7485 6.2856 17 1 10.4731 -3.6484 6.6845 18 6 8.6814 -4.8433 6.6504 19 7 9.0050 -5.5673 7.6899 20 14 7.1611 -5.2692 5.6521 21 1 5.9867 -4.5499 6.2075 22 1 7.3673 -4.8632 4.2387 23 1 6.9207 -6.7332 5.7166 24 7 7.6783 -2.8019 5.0445 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7515 -1.7716 1.2056 29 1 1.6053 -0.2618 2.1369 30 1 3.8532 0.4368 1.3574 31 1 3.9993 -1.0730 0.4260 32 1 3.4256 -1.7351 3.1111 33 1 5.2067 -2.4768 4.4318 34 1 7.5464 -0.1738 2.9971 35 1 9.9493 -0.0640 3.6065 36 1 10.8636 -1.7549 5.1758 37 1 9.8327 -5.3923 8.1643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881144598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = -84.587912 kcal Electronic energy + Delta-G solvation = -21235.961965 eV Core-core repulsion = 17733.052011 eV Total energy + Delta-G solvation = -3502.909954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.57897 -41.79776 -40.07077 -37.06205 -36.14030 -35.38500 -34.16645 -32.93036 -31.42172 -29.75320 -27.24022 -25.11449 -23.66078 -23.31479 -22.41431 -21.70888 -20.47633 -19.43998 -18.56885 -17.69229 -17.09733 -16.83050 -16.74937 -16.31262 -15.98369 -15.76498 -15.68824 -15.17568 -15.04177 -14.76035 -14.33659 -14.21434 -13.71533 -13.67578 -13.07342 -12.98348 -12.88129 -12.76696 -12.41777 -12.15936 -11.84687 -11.83389 -11.62558 -11.57258 -11.06490 -10.97165 -10.37999 -10.22191 -9.82485 -9.30758 -9.14451 -6.77796 0.60396 0.79745 1.37455 1.52842 1.66786 1.98310 2.01958 2.41337 2.66043 3.00419 3.59925 3.61699 3.73710 3.87459 4.04367 4.09930 4.29324 4.38295 4.42121 4.57434 4.67844 4.72358 4.80351 4.83925 4.90455 5.04894 5.24362 5.28595 5.34605 5.38242 5.39939 5.46361 5.69960 5.79702 5.94218 6.06868 6.43359 6.63756 6.86046 7.38001 7.56087 7.94506 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.003687 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.115385 B = 7591.995256 C = 8398.352160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.098 0.902 4 F -0.235 7.235 5 C -0.148 4.148 6 C 0.135 3.865 7 N -0.721 5.721 8 C 0.706 3.294 9 O -0.599 6.599 10 N -0.663 5.663 11 C 0.392 3.608 12 C -0.309 4.309 13 C -0.030 4.030 14 C -0.297 4.297 15 C 0.259 3.741 16 C -0.513 4.513 17 H 0.069 0.931 18 C 0.021 3.979 19 N -0.826 5.826 20 Si 1.176 2.824 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.321 1.321 24 N -0.608 5.608 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.416 0.584 33 H 0.416 0.584 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.086 9.975 -10.680 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.046 3.954 3 H 0.116 0.884 4 F -0.216 7.216 5 C -0.186 4.186 6 C 0.011 3.989 7 N -0.378 5.378 8 C 0.406 3.594 9 O -0.478 6.478 10 N -0.311 5.311 11 C 0.159 3.841 12 C -0.333 4.333 13 C -0.054 4.054 14 C -0.319 4.319 15 C 0.134 3.866 16 C -0.545 4.545 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.449 5.449 20 Si 1.006 2.994 21 H -0.196 1.196 22 H -0.223 1.223 23 H -0.254 1.254 24 N -0.334 5.334 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.253 0.747 33 H 0.253 0.747 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.132 0.868 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.139 8.830 -11.030 24.601 hybrid contribution 2.159 0.960 0.589 2.435 sum -17.981 9.790 -10.441 22.982 Atomic orbital electron populations 1.22357 0.92379 1.03980 1.04610 1.21749 0.96205 0.96715 0.80695 0.88373 1.92804 1.90669 1.83838 1.54332 1.22400 0.92762 1.03717 0.99740 1.21306 0.94781 0.97049 0.85749 1.44921 1.03982 1.60005 1.28905 1.15882 0.83786 0.79320 0.80383 1.90820 1.55321 1.51618 1.50037 1.42235 1.07337 1.53956 1.27581 1.18087 0.84031 0.90234 0.91765 1.21867 0.95231 1.04510 1.11734 1.21315 0.94704 0.96196 0.93161 1.21764 1.00253 1.02179 1.07705 1.18367 0.86293 0.92380 0.89574 1.20641 1.02418 1.06804 1.24668 0.91304 1.28435 1.05529 0.91430 0.94227 1.70634 1.22727 1.38963 1.12533 0.81707 0.71911 0.71225 0.74538 1.19624 1.22256 1.25355 1.66123 1.15388 1.27985 1.23887 0.88582 0.91279 0.91450 0.89365 0.86510 0.91318 0.93074 0.74707 0.74693 0.83504 0.84040 0.86783 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.65 71.98 0.69 -0.50 16 2 C 0.08 0.89 3.96 30.60 0.12 1.01 16 3 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 4 F -0.24 -4.46 16.76 44.97 0.75 -3.70 16 5 C -0.15 -1.45 5.10 30.60 0.16 -1.30 16 6 C 0.13 2.45 5.59 86.38 0.48 2.93 16 7 N -0.72 -15.10 5.56 -478.54 -2.66 -17.76 16 8 C 0.71 23.04 8.40 179.06 1.50 24.55 16 9 O -0.60 -24.10 13.14 -3.95 -0.05 -24.16 16 10 N -0.66 -23.65 5.42 -322.14 -1.75 -25.40 16 11 C 0.39 17.82 7.51 133.26 1.00 18.82 16 12 C -0.31 -13.82 8.83 22.72 0.20 -13.62 16 13 C -0.03 -1.28 10.15 22.40 0.23 -1.05 16 14 C -0.30 -14.30 9.83 22.87 0.22 -14.08 16 15 C 0.26 13.87 6.27 40.19 0.25 14.12 16 16 C -0.51 -28.84 9.51 23.47 0.22 -28.62 16 17 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 18 C 0.02 1.17 5.51 85.29 0.47 1.64 16 19 N -0.83 -45.71 13.65 21.84 0.30 -45.41 16 20 Si 1.18 55.94 25.93 68.60 1.78 57.72 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -14.58 6.55 99.48 0.65 -13.93 16 23 H -0.32 -14.81 7.11 99.48 0.71 -14.10 16 24 N -0.61 -30.81 5.07 -186.37 -0.95 -31.76 16 25 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.18 7.94 -2.39 -0.02 1.16 16 32 H 0.42 5.71 8.49 -92.71 -0.79 4.92 16 33 H 0.42 12.42 8.84 -92.71 -0.82 11.60 16 34 H 0.15 6.45 5.33 -3.17 -0.02 6.43 16 35 H 0.14 5.00 8.06 -2.91 -0.02 4.97 16 36 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 37 H 0.28 15.14 8.73 -92.71 -0.81 14.34 16 Total: -1.00 -71.01 317.09 2.39 -68.62 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.59 Total: 17.93 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.56 Total: 3.92 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.05 Total: -120.33 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.75 Total: -3.70 kcal Atomic # 14 Polarization: 55.94 SS G_CDS: 1.78 Total: 57.72 kcal Total: -71.01 2.39 -68.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.969 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds