Wall clock time and date at job start Tue Mar 31 2020 05:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87224 * 2 1 4 4 C 1.54328 * 109.88144 * 121.17244 * 2 1 3 5 5 H 1.08995 * 110.71837 * 23.25533 * 4 2 1 6 6 N 1.46501 * 110.72042 * 259.97556 * 4 2 1 7 7 C 1.36929 * 119.99614 * 155.00293 * 6 4 2 8 8 H 1.07998 * 120.00657 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99971 * 180.02562 * 7 6 4 10 10 N 1.31613 * 120.00252 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99814 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47078 * 89.99960 * 11 9 7 13 13 H 1.48503 * 109.47143 * 210.00164 * 11 9 7 14 14 H 1.48504 * 109.47314 * 330.00256 * 11 9 7 15 15 C 1.55159 * 102.93951 * 141.61290 * 4 2 1 16 16 C 1.54913 * 101.58373 * 324.49819 * 15 4 2 17 17 N 1.47021 * 109.88483 * 238.98260 * 2 1 3 18 18 C 1.34779 * 125.64438 * 61.66385 * 17 2 1 19 19 O 1.21694 * 120.00237 * 358.19139 * 18 17 2 20 20 C 1.46664 * 119.99641 * 178.19027 * 18 17 2 21 21 C 1.37925 * 126.21053 * 188.03624 * 20 18 17 22 22 C 1.39931 * 107.10562 * 179.97438 * 21 20 18 23 23 F 1.35106 * 126.07573 * 179.97438 * 22 21 20 24 24 C 1.35566 * 107.84588 * 0.02562 * 22 21 20 25 25 N 1.35753 * 108.82839 * 359.75045 * 24 22 21 26 26 H 0.97000 * 125.67748 * 180.24676 * 25 24 22 27 27 H 1.09004 * 109.47191 * 179.56209 * 1 2 3 28 28 H 1.08996 * 109.47330 * 299.56209 * 1 2 3 29 29 H 1.08998 * 109.47154 * 59.56639 * 1 2 3 30 30 H 0.96996 * 120.00008 * 335.00130 * 6 4 2 31 31 H 0.97002 * 120.00088 * 179.97438 * 10 9 7 32 32 H 1.08996 * 111.00563 * 206.42764 * 15 4 2 33 33 H 1.08999 * 111.00502 * 82.57032 * 15 4 2 34 34 H 1.08993 * 110.36848 * 278.17335 * 16 15 4 35 35 H 1.09002 * 110.36782 * 155.84656 * 16 15 4 36 36 H 1.08001 * 126.45121 * 359.97438 * 21 20 18 37 37 H 1.07997 * 125.58364 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2418 5 1 1.3051 -1.4482 1.6162 6 7 2.4554 0.1930 2.2878 7 6 2.4581 -0.1995 3.5997 8 1 2.1654 -1.2051 3.8633 9 6 2.8372 0.6953 4.5910 10 7 2.8393 0.3183 5.8520 11 14 3.3441 2.4344 4.1353 12 1 2.1494 3.3163 4.1427 13 1 4.3354 2.9355 5.1210 14 1 3.9507 2.4341 2.7798 15 6 3.2876 -1.5151 0.6904 16 6 2.8146 -1.8784 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.8083 -0.3579 -2.4662 19 8 1.1155 0.6102 -2.7185 20 6 2.4020 -1.1391 -3.5563 21 6 2.3911 -0.8085 -4.8953 22 6 3.0671 -1.8270 -5.5762 23 9 3.2797 -1.8879 -6.9090 24 6 3.4699 -2.7424 -4.6609 25 7 3.0756 -2.3322 -3.4283 26 1 3.2396 -2.8029 -2.5962 27 1 -0.3634 -1.0277 -0.0079 28 1 -0.3634 0.5070 0.8938 29 1 -0.3633 0.5205 -0.8860 30 1 2.7187 1.0960 2.0512 31 1 3.1046 0.9435 6.5447 32 1 3.4852 -2.4127 1.2763 33 1 4.1654 -0.8697 0.6592 34 1 2.1887 -2.7704 -0.7167 35 1 3.6717 -2.0318 -1.3950 36 1 1.9448 0.0710 -5.3355 37 1 4.0186 -3.6472 -4.8765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986581237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:04 Heat of formation + Delta-G solvation = -1.550189 kcal Electronic energy + Delta-G solvation = -21928.360441 eV Core-core repulsion = 18429.051273 eV Total energy + Delta-G solvation = -3499.309168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.72000 -41.67425 -39.72411 -37.60293 -34.47595 -32.12393 -31.35787 -30.95305 -30.17553 -28.85296 -25.62902 -24.00628 -23.00907 -21.67823 -21.06742 -20.51062 -20.11951 -17.87766 -17.73932 -16.81071 -16.30789 -15.87969 -15.54687 -15.25100 -14.81292 -14.61578 -14.22897 -14.11490 -13.71532 -13.62629 -13.41155 -13.03452 -12.83145 -12.45313 -12.19882 -12.03136 -11.89073 -11.44774 -11.34397 -11.00592 -10.80252 -10.51420 -10.21261 -10.03464 -9.71882 -9.22674 -9.07762 -8.79209 -8.50299 -7.45640 -5.90729 -3.29032 1.12305 2.16552 2.60919 2.82172 3.17138 3.29849 3.33339 3.38887 4.09365 4.47442 4.52085 4.56896 4.61979 4.87273 4.92405 5.02293 5.09740 5.19429 5.32815 5.47573 5.50522 5.62511 5.66799 5.72284 5.84636 6.00790 6.14074 6.21646 6.32028 6.42747 6.46566 6.57594 6.63395 6.89436 7.40184 7.81760 8.02551 8.27360 9.03352 9.75975 9.93432 11.26728 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.003796 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.869114 B = 7374.730082 C = 7577.934029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.078 0.922 4 C 0.183 3.817 5 H 0.079 0.921 6 N -0.736 5.736 7 C -0.253 4.253 8 H 0.093 0.907 9 C 0.011 3.989 10 N -0.928 5.928 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.154 4.154 16 C 0.083 3.917 17 N -0.608 5.608 18 C 0.600 3.400 19 O -0.523 6.523 20 C -0.015 4.015 21 C -0.135 4.135 22 C 0.002 3.998 23 F -0.128 7.128 24 C -0.007 4.007 25 N -0.531 5.531 26 H 0.428 0.572 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.364 0.636 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.159 0.841 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -7.791 -19.000 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.096 0.904 4 C 0.071 3.929 5 H 0.097 0.903 6 N -0.378 5.378 7 C -0.382 4.382 8 H 0.110 0.890 9 C -0.185 4.185 10 N -0.575 5.575 11 Si 0.712 3.288 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.195 4.195 16 C -0.041 4.041 17 N -0.342 5.342 18 C 0.389 3.611 19 O -0.400 6.400 20 C -0.130 4.130 21 C -0.162 4.162 22 C -0.024 4.024 23 F -0.107 7.107 24 C -0.143 4.143 25 N -0.134 5.134 26 H 0.274 0.726 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.197 0.803 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.177 0.823 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.657 -7.416 -18.785 20.206 hybrid contribution 0.732 0.878 -0.163 1.155 sum 1.390 -6.538 -18.948 20.092 Atomic orbital electron populations 1.22074 0.94257 1.02083 1.03072 1.22043 0.95018 0.96798 0.84049 0.90400 1.21211 0.93738 0.91391 0.86554 0.90285 1.42687 1.80640 1.11148 1.03320 1.19014 1.39416 0.99114 0.80685 0.88950 1.24664 1.01012 0.97816 0.95044 1.69689 1.53526 1.35343 0.98931 0.86599 0.78568 0.86130 0.77494 1.20801 1.21560 1.20300 1.23572 1.01419 1.02383 0.92114 1.22665 0.94281 0.89129 0.98005 1.48473 1.52135 1.28595 1.04990 1.16569 0.80589 0.83780 0.80158 1.90848 1.38703 1.27582 1.82819 1.20324 1.06943 0.90581 0.95122 1.21288 1.03383 1.00754 0.90754 1.16491 1.08782 0.98848 0.78242 1.91449 1.93992 1.96466 1.28821 1.21818 1.06749 1.01925 0.83854 1.42686 1.42802 1.18787 1.09132 0.72579 0.92749 0.90831 0.91652 0.80262 0.92827 0.89653 0.90404 0.90854 0.91583 0.82301 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.10 37.16 0.34 -2.01 16 2 C 0.12 1.95 3.22 -66.95 -0.22 1.73 16 3 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 4 C 0.18 3.08 3.14 -66.09 -0.21 2.87 16 5 H 0.08 1.35 7.80 -51.93 -0.41 0.94 16 6 N -0.74 -15.90 5.03 -51.65 -0.26 -16.16 16 7 C -0.25 -6.60 10.44 -15.06 -0.16 -6.75 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 10 N -0.93 -27.87 13.97 55.49 0.78 -27.09 16 11 Si 0.88 21.20 27.73 -169.99 -4.71 16.49 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 15 C -0.15 -2.11 6.77 -24.58 -0.17 -2.28 16 16 C 0.08 0.87 5.46 -2.53 -0.01 0.86 16 17 N -0.61 -8.27 3.06 -164.55 -0.50 -8.78 16 18 C 0.60 8.81 7.62 -12.86 -0.10 8.72 16 19 O -0.52 -9.32 15.87 5.19 0.08 -9.24 16 20 C -0.02 -0.19 6.84 -81.98 -0.56 -0.75 16 21 C -0.13 -1.63 10.67 -39.06 -0.42 -2.05 16 22 C 0.00 0.02 7.98 -39.90 -0.32 -0.30 16 23 F -0.13 -1.48 17.32 2.25 0.04 -1.44 16 24 C -0.01 -0.06 11.90 -16.77 -0.20 -0.25 16 25 N -0.53 -4.65 5.39 -9.31 -0.05 -4.70 16 26 H 0.43 2.77 5.21 -40.82 -0.21 2.56 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.03 6.82 -51.93 -0.35 0.67 16 30 H 0.36 7.93 5.43 -40.82 -0.22 7.71 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 35 H 0.07 0.55 5.54 -51.93 -0.29 0.26 16 36 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -31.80 309.43 -6.51 -38.31 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.43 Total: 7.94 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.11 Total: 0.00 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.04 Total: -56.72 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.80 -6.51 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986581237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.761 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds