Wall clock time and date at job start Tue Mar 31 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87224 * 2 1 4 4 C 1.54328 * 109.88144 * 121.17244 * 2 1 3 5 5 H 1.08995 * 110.71837 * 23.25533 * 4 2 1 6 6 N 1.46501 * 110.72042 * 259.97556 * 4 2 1 7 7 C 1.36929 * 119.99614 * 155.00293 * 6 4 2 8 8 H 1.07998 * 120.00657 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99971 * 180.02562 * 7 6 4 10 10 N 1.31613 * 120.00252 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99814 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47078 * 89.99960 * 11 9 7 13 13 H 1.48503 * 109.47143 * 210.00164 * 11 9 7 14 14 H 1.48504 * 109.47314 * 330.00256 * 11 9 7 15 15 C 1.55159 * 102.93951 * 141.61290 * 4 2 1 16 16 C 1.54913 * 101.58373 * 324.49819 * 15 4 2 17 17 N 1.47021 * 109.88483 * 238.98260 * 2 1 3 18 18 C 1.34779 * 125.64438 * 61.66385 * 17 2 1 19 19 O 1.21694 * 120.00237 * 358.19139 * 18 17 2 20 20 C 1.46664 * 119.99641 * 178.19027 * 18 17 2 21 21 C 1.37925 * 126.21053 * 188.03624 * 20 18 17 22 22 C 1.39931 * 107.10562 * 179.97438 * 21 20 18 23 23 F 1.35106 * 126.07573 * 179.97438 * 22 21 20 24 24 C 1.35566 * 107.84588 * 0.02562 * 22 21 20 25 25 N 1.35753 * 108.82839 * 359.75045 * 24 22 21 26 26 H 0.97000 * 125.67748 * 180.24676 * 25 24 22 27 27 H 1.09004 * 109.47191 * 179.56209 * 1 2 3 28 28 H 1.08996 * 109.47330 * 299.56209 * 1 2 3 29 29 H 1.08998 * 109.47154 * 59.56639 * 1 2 3 30 30 H 0.96996 * 120.00008 * 335.00130 * 6 4 2 31 31 H 0.97002 * 120.00088 * 179.97438 * 10 9 7 32 32 H 1.08996 * 111.00563 * 206.42764 * 15 4 2 33 33 H 1.08999 * 111.00502 * 82.57032 * 15 4 2 34 34 H 1.08993 * 110.36848 * 278.17335 * 16 15 4 35 35 H 1.09002 * 110.36782 * 155.84656 * 16 15 4 36 36 H 1.08001 * 126.45121 * 359.97438 * 21 20 18 37 37 H 1.07997 * 125.58364 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2418 5 1 1.3051 -1.4482 1.6162 6 7 2.4554 0.1930 2.2878 7 6 2.4581 -0.1995 3.5997 8 1 2.1654 -1.2051 3.8633 9 6 2.8372 0.6953 4.5910 10 7 2.8393 0.3183 5.8520 11 14 3.3441 2.4344 4.1353 12 1 2.1494 3.3163 4.1427 13 1 4.3354 2.9355 5.1210 14 1 3.9507 2.4341 2.7798 15 6 3.2876 -1.5151 0.6904 16 6 2.8146 -1.8784 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.8083 -0.3579 -2.4662 19 8 1.1155 0.6102 -2.7185 20 6 2.4020 -1.1391 -3.5563 21 6 2.3911 -0.8085 -4.8953 22 6 3.0671 -1.8270 -5.5762 23 9 3.2797 -1.8879 -6.9090 24 6 3.4699 -2.7424 -4.6609 25 7 3.0756 -2.3322 -3.4283 26 1 3.2396 -2.8029 -2.5962 27 1 -0.3634 -1.0277 -0.0079 28 1 -0.3634 0.5070 0.8938 29 1 -0.3633 0.5205 -0.8860 30 1 2.7187 1.0960 2.0512 31 1 3.1046 0.9435 6.5447 32 1 3.4852 -2.4127 1.2763 33 1 4.1654 -0.8697 0.6592 34 1 2.1887 -2.7704 -0.7167 35 1 3.6717 -2.0318 -1.3950 36 1 1.9448 0.0710 -5.3355 37 1 4.0186 -3.6472 -4.8765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986581237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:02 Heat of formation + Delta-G solvation = -23.239277 kcal Electronic energy + Delta-G solvation = -21929.300950 eV Core-core repulsion = 18429.051273 eV Total energy + Delta-G solvation = -3500.249678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.53498 -42.54342 -40.81840 -38.84576 -36.12735 -33.74820 -32.62085 -31.85651 -31.57264 -29.83909 -27.04537 -25.08306 -24.61969 -22.67798 -22.14271 -21.50911 -21.24686 -19.64762 -18.84866 -17.90611 -17.30530 -16.79490 -16.59339 -16.37578 -16.21033 -15.83941 -15.52305 -15.22188 -14.83872 -14.70013 -14.57964 -14.41307 -14.16259 -13.81376 -13.50113 -13.35387 -13.08092 -12.77299 -12.72112 -12.57406 -12.20300 -12.10716 -11.83479 -11.61789 -11.25989 -10.97921 -10.10887 -9.84140 -9.36027 -9.30756 -8.03262 -5.37434 0.22874 1.37140 1.38078 1.40132 1.46064 1.63677 1.97444 2.14326 2.46898 3.17458 3.28492 3.46153 3.54190 3.70754 3.84804 4.00561 4.08789 4.20209 4.23275 4.26361 4.34434 4.44682 4.55469 4.61227 4.79983 4.85751 4.97609 5.14928 5.17829 5.22438 5.34519 5.42845 5.71669 5.76689 6.20317 6.24325 6.35107 6.92084 7.04744 7.79524 7.96497 9.17491 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.003796 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.869114 B = 7374.730082 C = 7577.934029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 H 0.058 0.942 4 C 0.174 3.826 5 H 0.079 0.921 6 N -0.743 5.743 7 C -0.225 4.225 8 H 0.070 0.930 9 C -0.056 4.056 10 N -0.979 5.979 11 Si 0.943 3.057 12 H -0.283 1.283 13 H -0.297 1.297 14 H -0.256 1.256 15 C -0.146 4.146 16 C 0.088 3.912 17 N -0.607 5.607 18 C 0.599 3.401 19 O -0.567 6.567 20 C -0.037 4.037 21 C -0.145 4.145 22 C -0.028 4.028 23 F -0.135 7.135 24 C 0.036 3.964 25 N -0.515 5.515 26 H 0.441 0.559 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.363 0.637 31 H 0.258 0.742 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -9.668 -21.108 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 H 0.076 0.924 4 C 0.065 3.935 5 H 0.097 0.903 6 N -0.385 5.385 7 C -0.356 4.356 8 H 0.087 0.913 9 C -0.248 4.248 10 N -0.630 5.630 11 Si 0.772 3.228 12 H -0.209 1.209 13 H -0.224 1.224 14 H -0.181 1.181 15 C -0.187 4.187 16 C -0.035 4.035 17 N -0.340 5.340 18 C 0.390 3.610 19 O -0.446 6.446 20 C -0.151 4.151 21 C -0.172 4.172 22 C -0.053 4.053 23 F -0.115 7.115 24 C -0.102 4.102 25 N -0.119 5.119 26 H 0.290 0.710 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.197 0.803 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.166 0.834 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.817 -9.336 -20.941 22.999 hybrid contribution 0.346 1.336 0.386 1.433 sum 2.164 -8.000 -20.555 22.163 Atomic orbital electron populations 1.21992 0.93938 1.02727 1.02102 1.21765 0.95222 0.95893 0.84557 0.92405 1.21414 0.95339 0.90920 0.85860 0.90327 1.42687 1.81027 1.12075 1.02729 1.18999 1.36309 0.97753 0.82510 0.91252 1.25353 1.02658 1.01765 0.95007 1.69844 1.56325 1.36673 1.00111 0.85590 0.77920 0.81462 0.77849 1.20905 1.22386 1.18121 1.23383 0.99104 1.01994 0.94193 1.22855 0.95581 0.88841 0.96180 1.48441 1.52183 1.29189 1.04168 1.16871 0.80044 0.83436 0.80652 1.90822 1.40724 1.29569 1.83468 1.19791 1.09115 0.92185 0.93982 1.21391 1.03461 1.01056 0.91333 1.16666 1.10445 0.99731 0.78464 1.91429 1.94156 1.96536 1.29338 1.22477 1.03626 1.01688 0.82420 1.42625 1.41653 1.17527 1.10069 0.71027 0.91276 0.91740 0.92631 0.80327 0.93350 0.88563 0.91512 0.87573 0.88536 0.83361 0.75464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 9.10 71.98 0.66 -3.75 16 2 C 0.13 3.93 3.22 45.34 0.15 4.08 16 3 H 0.06 2.00 7.72 -2.38 -0.02 1.98 16 4 C 0.17 5.62 3.14 46.18 0.14 5.76 16 5 H 0.08 2.56 7.80 -2.39 -0.02 2.55 16 6 N -0.74 -31.56 5.03 -317.32 -1.60 -33.15 16 7 C -0.22 -11.77 10.44 84.04 0.88 -10.90 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 9 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 10 N -0.98 -60.23 13.97 21.65 0.30 -59.93 16 11 Si 0.94 44.18 27.73 68.60 1.90 46.09 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 14 H -0.26 -10.96 6.52 99.48 0.65 -10.31 16 15 C -0.15 -3.61 6.77 31.99 0.22 -3.39 16 16 C 0.09 1.49 5.46 86.86 0.47 1.96 16 17 N -0.61 -15.22 3.06 -792.72 -2.43 -17.65 16 18 C 0.60 16.83 7.62 86.44 0.66 17.48 16 19 O -0.57 -20.34 15.87 -4.33 -0.07 -20.41 16 20 C -0.04 -0.80 6.84 40.36 0.28 -0.53 16 21 C -0.14 -3.34 10.67 22.61 0.24 -3.10 16 22 C -0.03 -0.54 7.98 22.06 0.18 -0.36 16 23 F -0.14 -2.86 17.32 44.97 0.78 -2.08 16 24 C 0.04 0.42 11.90 83.47 0.99 1.41 16 25 N -0.51 -6.68 5.39 -183.38 -0.99 -7.67 16 26 H 0.44 3.23 5.21 -92.71 -0.48 2.75 16 27 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.75 6.82 -2.39 -0.02 1.73 16 30 H 0.36 15.49 5.43 -92.71 -0.50 14.99 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 1.22 8.11 -2.39 -0.02 1.20 16 35 H 0.10 1.10 5.54 -2.39 -0.01 1.08 16 36 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.23 0.50 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -71.94 309.43 3.30 -68.64 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.07 Total: 20.14 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.33 Total: 6.01 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -4.71 Total: -118.40 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.07 Total: -20.41 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.09 kcal Total: -71.94 3.30 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986581237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.405 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds