Wall clock time and date at job start Tue Mar 31 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99552 * 2 1 4 4 C 1.54334 * 109.99005 * 238.96594 * 2 1 3 5 5 C 1.55150 * 103.02233 * 218.66067 * 4 2 1 6 6 H 1.08998 * 111.00455 * 153.37983 * 5 4 2 7 7 N 1.46499 * 111.00844 * 277.23252 * 5 4 2 8 8 C 1.36937 * 120.00371 * 198.65015 * 7 5 4 9 9 H 1.08001 * 119.99910 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00119 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99779 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99946 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47089 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46950 * 120.00052 * 12 10 8 15 15 H 1.48494 * 109.47269 * 240.00336 * 12 10 8 16 16 C 1.54914 * 101.57927 * 35.30803 * 5 4 2 17 17 N 1.47015 * 109.88952 * 121.09851 * 2 1 3 18 18 C 1.34782 * 125.64584 * 298.39813 * 17 2 1 19 19 O 1.21700 * 120.00094 * 1.59191 * 18 17 2 20 20 C 1.46664 * 119.99776 * 181.59583 * 18 17 2 21 21 C 1.37928 * 126.20986 * 172.17310 * 20 18 17 22 22 C 1.39934 * 107.10290 * 180.23868 * 21 20 18 23 23 F 1.35100 * 126.07537 * 179.75928 * 22 21 20 24 24 C 1.35562 * 107.84610 * 359.76146 * 22 21 20 25 25 N 1.35748 * 108.83271 * 359.97438 * 24 22 21 26 26 H 0.97000 * 125.67872 * 179.97438 * 25 24 22 27 27 H 1.09003 * 109.46884 * 300.35353 * 1 2 3 28 28 H 1.08994 * 109.47313 * 60.35501 * 1 2 3 29 29 H 1.08998 * 109.47433 * 180.36073 * 1 2 3 30 30 H 1.09005 * 110.84890 * 100.19613 * 4 2 1 31 31 H 1.09000 * 110.51447 * 336.97582 * 4 2 1 32 32 H 0.97003 * 119.99647 * 18.64406 * 7 5 4 33 33 H 0.97000 * 119.99345 * 179.97438 * 11 10 8 34 34 H 1.08998 * 110.36472 * 204.15144 * 16 5 4 35 35 H 1.09002 * 110.45954 * 81.87764 * 16 5 4 36 36 H 1.07999 * 126.45093 * 0.03255 * 21 20 18 37 37 H 1.07999 * 125.58438 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5182 -0.6917 6 1 3.4806 -2.4154 -1.2794 7 7 4.4699 -0.6561 -0.6466 8 6 5.7188 -1.2114 -0.5636 9 1 5.8313 -2.2850 -0.5310 10 6 6.8403 -0.3944 -0.5214 11 7 6.7032 0.9140 -0.5617 12 14 8.5440 -1.1520 -0.4075 13 1 8.4265 -2.6321 -0.3765 14 1 9.3473 -0.7433 -1.5877 15 1 9.2124 -0.6830 0.8328 16 6 2.8099 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8075 -0.3621 2.4656 19 8 1.1169 0.6074 2.7193 20 6 2.3976 -1.1474 3.5547 21 6 2.3821 -0.8220 4.8950 22 6 3.0602 -1.8407 5.5737 23 9 3.2740 -1.9034 6.9061 24 6 3.4645 -2.7534 4.6564 25 7 3.0639 -2.3445 3.4255 26 1 3.2248 -2.8154 2.5928 27 1 -0.3633 0.5193 0.8868 28 1 -0.3633 0.5083 -0.8931 29 1 -0.3634 -1.0276 0.0065 30 1 2.3596 -0.0448 -2.0192 31 1 1.3052 -1.4405 -1.6197 32 1 4.3688 0.3083 -0.6756 33 1 7.4869 1.4848 -0.5319 34 1 3.6656 -2.0412 1.3930 35 1 2.1807 -2.7722 0.7131 36 1 1.9342 0.0557 5.3371 37 1 4.0150 -3.6576 4.8700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989200597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:54 Heat of formation + Delta-G solvation = -8.177245 kcal Electronic energy + Delta-G solvation = -22409.782807 eV Core-core repulsion = 18910.186268 eV Total energy + Delta-G solvation = -3499.596539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.43229 -41.32978 -39.46735 -37.36515 -34.12722 -32.13738 -31.47047 -30.66764 -28.90342 -28.54414 -25.79888 -24.04980 -23.41385 -21.25417 -20.81885 -20.20565 -19.68663 -17.68051 -17.29208 -16.55667 -16.02717 -15.61090 -15.24383 -14.96967 -14.71345 -14.33159 -14.12239 -13.82773 -13.65952 -13.34557 -13.26601 -12.93891 -12.82088 -12.35724 -12.01019 -11.82539 -11.62737 -11.27877 -11.07761 -10.91019 -10.77028 -10.42882 -10.12152 -9.86667 -9.83864 -9.18405 -8.88328 -8.47390 -8.16603 -7.18563 -5.94760 -3.26672 1.47208 2.48997 2.97476 3.16710 3.31720 3.36079 3.40252 3.51622 4.40539 4.43966 4.78903 4.91023 4.94831 5.07335 5.19884 5.29679 5.33243 5.45098 5.52755 5.58302 5.61341 5.73362 5.78662 5.94832 5.98920 6.06546 6.23754 6.31147 6.38103 6.51103 6.55038 6.68059 6.90207 7.25320 7.50573 7.72113 8.21833 8.33525 9.34083 9.87807 10.21979 11.26798 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.006727 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.144309 B = 4161.292979 C = 5806.551151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.074 0.926 7 N -0.710 5.710 8 C -0.256 4.256 9 H 0.073 0.927 10 C -0.004 4.004 11 N -0.923 5.923 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.290 1.290 16 C 0.051 3.949 17 N -0.596 5.596 18 C 0.603 3.397 19 O -0.535 6.535 20 C -0.010 4.010 21 C -0.139 4.139 22 C -0.001 4.001 23 F -0.131 7.131 24 C -0.007 4.007 25 N -0.525 5.525 26 H 0.429 0.571 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.387 0.613 33 H 0.258 0.742 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.157 0.843 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -8.229 3.738 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.059 3.941 6 H 0.092 0.908 7 N -0.350 5.350 8 C -0.387 4.387 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.570 5.570 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.216 1.216 15 H -0.217 1.217 16 C -0.076 4.076 17 N -0.328 5.328 18 C 0.392 3.608 19 O -0.412 6.412 20 C -0.125 4.125 21 C -0.166 4.166 22 C -0.026 4.026 23 F -0.110 7.110 24 C -0.144 4.144 25 N -0.127 5.127 26 H 0.276 0.724 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.221 0.779 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.175 0.825 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.374 -7.838 3.775 13.539 hybrid contribution 1.295 -0.342 0.130 1.346 sum -9.078 -8.180 3.905 12.829 Atomic orbital electron populations 1.22143 0.95097 1.01846 1.02756 1.21520 0.93748 0.96861 0.84175 0.90425 1.23053 0.97954 1.00074 0.96483 1.21284 0.87252 0.94733 0.90798 0.90828 1.42353 1.00135 1.05314 1.87187 1.19213 0.83317 0.91757 1.44382 0.90948 1.24793 0.98073 0.95329 1.02000 1.69671 1.29105 1.02160 1.56026 0.86145 0.84562 0.78145 0.77405 1.20467 1.21632 1.21724 1.23689 0.94124 0.87517 1.02306 1.48281 1.51639 1.28389 1.04514 1.16535 0.80287 0.83611 0.80329 1.90805 1.39622 1.27742 1.83057 1.20272 1.06838 0.90387 0.94966 1.21215 1.03950 1.00639 0.90811 1.16457 1.08996 0.99073 0.78119 1.91425 1.94053 1.96494 1.28990 1.21779 1.06496 1.02122 0.83993 1.42709 1.42361 1.18488 1.09184 0.72422 0.91330 0.91796 0.92856 0.89446 0.90527 0.77858 0.93234 0.90358 0.92249 0.82526 0.80263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.10 37.16 0.34 -1.76 16 2 C 0.14 2.13 3.46 -66.95 -0.23 1.90 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.14 -1.90 6.05 -24.89 -0.15 -2.06 16 5 C 0.17 2.86 3.69 -65.78 -0.24 2.61 16 6 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 7 N -0.71 -15.89 5.27 -51.35 -0.27 -16.17 16 8 C -0.26 -6.44 9.98 -15.06 -0.15 -6.59 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 11 N -0.92 -26.73 13.06 55.49 0.72 -26.01 16 12 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 C 0.05 0.75 5.15 -2.53 -0.01 0.73 16 17 N -0.60 -9.71 3.06 -164.55 -0.50 -10.21 16 18 C 0.60 10.84 7.62 -12.86 -0.10 10.74 16 19 O -0.53 -10.84 15.87 5.19 0.08 -10.76 16 20 C -0.01 -0.16 6.84 -81.98 -0.56 -0.72 16 21 C -0.14 -2.21 10.67 -39.06 -0.42 -2.62 16 22 C 0.00 -0.01 7.98 -39.90 -0.32 -0.33 16 23 F -0.13 -1.93 17.32 2.25 0.04 -1.89 16 24 C -0.01 -0.08 11.90 -16.78 -0.20 -0.28 16 25 N -0.52 -7.03 5.39 -9.31 -0.05 -7.08 16 26 H 0.43 5.03 5.22 -40.82 -0.21 4.82 16 27 H 0.07 1.03 6.83 -51.93 -0.35 0.68 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 0.86 7.84 -51.93 -0.41 0.46 16 32 H 0.39 9.63 7.82 -40.82 -0.32 9.31 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.08 1.25 5.54 -51.93 -0.29 0.96 16 35 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 36 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -30.87 313.11 -6.93 -37.80 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.51 Total: 11.99 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.14 Total: 1.41 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.10 Total: -59.47 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.87 -6.93 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989200597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.624 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds