Wall clock time and date at job start Tue Mar 31 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99552 * 2 1 4 4 C 1.54334 * 109.99005 * 238.96594 * 2 1 3 5 5 C 1.55150 * 103.02233 * 218.66067 * 4 2 1 6 6 H 1.08998 * 111.00455 * 153.37983 * 5 4 2 7 7 N 1.46499 * 111.00844 * 277.23252 * 5 4 2 8 8 C 1.36937 * 120.00371 * 198.65015 * 7 5 4 9 9 H 1.08001 * 119.99910 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00119 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99779 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99946 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47089 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46950 * 120.00052 * 12 10 8 15 15 H 1.48494 * 109.47269 * 240.00336 * 12 10 8 16 16 C 1.54914 * 101.57927 * 35.30803 * 5 4 2 17 17 N 1.47015 * 109.88952 * 121.09851 * 2 1 3 18 18 C 1.34782 * 125.64584 * 298.39813 * 17 2 1 19 19 O 1.21700 * 120.00094 * 1.59191 * 18 17 2 20 20 C 1.46664 * 119.99776 * 181.59583 * 18 17 2 21 21 C 1.37928 * 126.20986 * 172.17310 * 20 18 17 22 22 C 1.39934 * 107.10290 * 180.23868 * 21 20 18 23 23 F 1.35100 * 126.07537 * 179.75928 * 22 21 20 24 24 C 1.35562 * 107.84610 * 359.76146 * 22 21 20 25 25 N 1.35748 * 108.83271 * 359.97438 * 24 22 21 26 26 H 0.97000 * 125.67872 * 179.97438 * 25 24 22 27 27 H 1.09003 * 109.46884 * 300.35353 * 1 2 3 28 28 H 1.08994 * 109.47313 * 60.35501 * 1 2 3 29 29 H 1.08998 * 109.47433 * 180.36073 * 1 2 3 30 30 H 1.09005 * 110.84890 * 100.19613 * 4 2 1 31 31 H 1.09000 * 110.51447 * 336.97582 * 4 2 1 32 32 H 0.97003 * 119.99647 * 18.64406 * 7 5 4 33 33 H 0.97000 * 119.99345 * 179.97438 * 11 10 8 34 34 H 1.08998 * 110.36472 * 204.15144 * 16 5 4 35 35 H 1.09002 * 110.45954 * 81.87764 * 16 5 4 36 36 H 1.07999 * 126.45093 * 0.03255 * 21 20 18 37 37 H 1.07999 * 125.58438 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5182 -0.6917 6 1 3.4806 -2.4154 -1.2794 7 7 4.4699 -0.6561 -0.6466 8 6 5.7188 -1.2114 -0.5636 9 1 5.8313 -2.2850 -0.5310 10 6 6.8403 -0.3944 -0.5214 11 7 6.7032 0.9140 -0.5617 12 14 8.5440 -1.1520 -0.4075 13 1 8.4265 -2.6321 -0.3765 14 1 9.3473 -0.7433 -1.5877 15 1 9.2124 -0.6830 0.8328 16 6 2.8099 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8075 -0.3621 2.4656 19 8 1.1169 0.6074 2.7193 20 6 2.3976 -1.1474 3.5547 21 6 2.3821 -0.8220 4.8950 22 6 3.0602 -1.8407 5.5737 23 9 3.2740 -1.9034 6.9061 24 6 3.4645 -2.7534 4.6564 25 7 3.0639 -2.3445 3.4255 26 1 3.2248 -2.8154 2.5928 27 1 -0.3633 0.5193 0.8868 28 1 -0.3633 0.5083 -0.8931 29 1 -0.3634 -1.0276 0.0065 30 1 2.3596 -0.0448 -2.0192 31 1 1.3052 -1.4405 -1.6197 32 1 4.3688 0.3083 -0.6756 33 1 7.4869 1.4848 -0.5319 34 1 3.6656 -2.0412 1.3930 35 1 2.1807 -2.7722 0.7131 36 1 1.9342 0.0557 5.3371 37 1 4.0150 -3.6576 4.8700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989200597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:54 Heat of formation + Delta-G solvation = -28.669829 kcal Electronic energy + Delta-G solvation = -22410.671432 eV Core-core repulsion = 18910.186268 eV Total energy + Delta-G solvation = -3500.485164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.55778 -42.49761 -40.72288 -38.75548 -35.83757 -33.42055 -33.07953 -31.83779 -30.23036 -29.92973 -26.96744 -25.78794 -24.75689 -22.40654 -22.11235 -21.36854 -20.92940 -19.31170 -18.75269 -17.85663 -17.26707 -16.80938 -16.57264 -16.32121 -16.11998 -15.57852 -15.53764 -15.25440 -14.97820 -14.79620 -14.48812 -14.22092 -14.10645 -13.55211 -13.27876 -13.16540 -12.92823 -12.78646 -12.70678 -12.30493 -12.18105 -12.03611 -11.66441 -11.52944 -11.23189 -11.01237 -10.08535 -9.77397 -9.31226 -9.00622 -7.95223 -5.24456 0.26611 1.36727 1.47715 1.48392 1.57525 1.77953 2.02786 2.21898 2.54932 3.24462 3.36161 3.61984 3.76526 3.86320 3.90292 3.99799 4.09535 4.22848 4.33579 4.40664 4.47609 4.58051 4.65538 4.71082 4.83219 4.88557 5.06025 5.15152 5.18703 5.30589 5.38610 5.50324 5.54667 5.72966 6.24409 6.25497 6.43470 7.00105 7.32555 8.07205 8.28373 9.28302 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.006727 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.144309 B = 4161.292979 C = 5806.551151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.133 3.867 3 H 0.042 0.958 4 C -0.121 4.121 5 C 0.160 3.840 6 H 0.096 0.904 7 N -0.726 5.726 8 C -0.234 4.234 9 H 0.091 0.909 10 C -0.076 4.076 11 N -0.970 5.970 12 Si 0.966 3.034 13 H -0.255 1.255 14 H -0.299 1.299 15 H -0.304 1.304 16 C 0.056 3.944 17 N -0.597 5.597 18 C 0.595 3.405 19 O -0.573 6.573 20 C -0.037 4.037 21 C -0.151 4.151 22 C -0.025 4.025 23 F -0.134 7.134 24 C 0.026 3.974 25 N -0.514 5.514 26 H 0.439 0.561 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.370 0.630 33 H 0.247 0.753 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 -11.737 3.242 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.061 0.939 4 C -0.160 4.160 5 C 0.050 3.950 6 H 0.113 0.887 7 N -0.364 5.364 8 C -0.366 4.366 9 H 0.109 0.891 10 C -0.268 4.268 11 N -0.621 5.621 12 Si 0.796 3.204 13 H -0.179 1.179 14 H -0.227 1.227 15 H -0.232 1.232 16 C -0.069 4.069 17 N -0.328 5.328 18 C 0.385 3.615 19 O -0.453 6.453 20 C -0.151 4.151 21 C -0.179 4.179 22 C -0.050 4.050 23 F -0.113 7.113 24 C -0.112 4.112 25 N -0.117 5.117 26 H 0.287 0.713 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.201 0.799 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.168 0.832 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.911 -11.434 3.247 16.134 hybrid contribution 1.364 0.684 0.298 1.555 sum -9.547 -10.750 3.545 14.808 Atomic orbital electron populations 1.22040 0.93125 1.02952 1.02554 1.21616 0.95299 0.95404 0.84628 0.93931 1.23001 0.97546 1.00126 0.95290 1.21647 0.86187 0.94896 0.92298 0.88655 1.42583 1.01316 1.05148 1.87393 1.19707 0.84215 0.92432 1.40201 0.89133 1.25546 1.01591 0.95692 1.04001 1.69838 1.29126 1.03604 1.59530 0.85184 0.80575 0.78607 0.76055 1.17921 1.22678 1.23228 1.23700 0.94584 0.88444 1.00197 1.48381 1.51329 1.28815 1.04275 1.16839 0.80074 0.83429 0.81162 1.90771 1.41447 1.29412 1.83702 1.20026 1.08787 0.91887 0.94430 1.21364 1.04141 1.01045 0.91320 1.16596 1.10288 0.99727 0.78433 1.91414 1.94156 1.96534 1.29164 1.22448 1.03905 1.02176 0.82666 1.42682 1.41524 1.17463 1.10035 0.71294 0.93868 0.89722 0.90923 0.90288 0.86446 0.79916 0.94387 0.91367 0.87517 0.83219 0.75781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.10 71.98 0.66 -3.00 16 2 C 0.13 3.95 3.46 45.34 0.16 4.11 16 3 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 4 C -0.12 -3.04 6.05 31.78 0.19 -2.85 16 5 C 0.16 4.82 3.69 46.38 0.17 5.00 16 6 H 0.10 2.54 8.13 -2.39 -0.02 2.52 16 7 N -0.73 -31.81 5.27 -316.38 -1.67 -33.48 16 8 C -0.23 -11.41 9.98 84.03 0.84 -10.57 16 9 H 0.09 4.02 7.83 -2.91 -0.02 4.00 16 10 C -0.08 -4.09 5.50 84.86 0.47 -3.62 16 11 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 12 Si 0.97 43.54 29.55 68.60 2.03 45.57 16 13 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 14 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 16 C 0.06 1.48 5.15 86.86 0.45 1.92 16 17 N -0.60 -18.75 3.06 -792.72 -2.43 -21.18 16 18 C 0.59 21.48 7.62 86.44 0.66 22.14 16 19 O -0.57 -24.17 15.87 -4.35 -0.07 -24.24 16 20 C -0.04 -1.17 6.84 40.36 0.28 -0.89 16 21 C -0.15 -4.81 10.67 22.61 0.24 -4.57 16 22 C -0.03 -0.71 7.98 22.06 0.18 -0.53 16 23 F -0.13 -3.78 17.32 44.97 0.78 -3.00 16 24 C 0.03 0.57 11.90 83.47 0.99 1.56 16 25 N -0.51 -12.37 5.39 -183.38 -0.99 -13.35 16 26 H 0.44 8.66 5.22 -92.71 -0.48 8.17 16 27 H 0.04 1.29 6.83 -2.39 -0.02 1.28 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.12 2.05 7.84 -2.39 -0.02 2.03 16 32 H 0.37 18.69 7.82 -92.71 -0.72 17.96 16 33 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 34 H 0.07 1.96 5.54 -2.39 -0.01 1.95 16 35 H 0.11 1.88 8.11 -2.39 -0.02 1.86 16 36 H 0.15 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.23 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -70.07 313.11 3.12 -66.96 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.09 Total: 31.55 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.27 Total: 8.70 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -4.80 Total: -125.53 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.07 Total: -24.24 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.07 3.12 -66.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989200597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.287 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds