Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99940 * 2 1 4 4 O 1.21697 * 119.99897 * 180.02562 * 3 2 1 5 5 C 1.46654 * 120.00114 * 0.02562 * 3 2 1 6 6 C 1.37929 * 126.21465 * 189.62399 * 5 3 2 7 7 C 1.39921 * 107.10986 * 179.88553 * 6 5 3 8 8 F 1.35102 * 126.08075 * 180.14889 * 7 6 5 9 9 C 1.35566 * 107.84489 * 0.38343 * 7 6 5 10 10 N 1.35746 * 108.83375 * 359.76232 * 9 7 6 11 11 H 0.96997 * 125.68474 * 180.02562 * 10 9 7 12 12 C 1.46499 * 119.99932 * 179.97438 * 2 1 3 13 13 H 1.08995 * 110.78166 * 176.76650 * 12 2 1 14 14 C 1.55157 * 110.72251 * 300.00502 * 12 2 1 15 15 C 1.54908 * 101.61843 * 153.84454 * 14 12 2 16 16 N 1.47472 * 104.81017 * 323.04273 * 15 14 12 17 17 C 1.36939 * 125.62973 * 204.04747 * 16 15 14 18 18 H 1.08001 * 119.99764 * 180.02562 * 17 16 15 19 19 C 1.38806 * 119.99625 * 0.02562 * 17 16 15 20 20 N 1.31613 * 120.00854 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99731 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47066 * 59.99671 * 21 19 17 23 23 H 1.48501 * 109.47091 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46864 * 300.00288 * 21 19 17 25 25 C 1.47026 * 108.72166 * 24.07294 * 16 15 14 26 26 H 1.09000 * 109.47810 * 276.27072 * 1 2 3 27 27 H 1.09000 * 109.47111 * 36.27116 * 1 2 3 28 28 H 1.09004 * 109.47389 * 156.26942 * 1 2 3 29 29 H 1.07995 * 126.44460 * 0.02562 * 6 5 3 30 30 H 1.08001 * 125.58873 * 179.76775 * 9 7 6 31 31 H 1.08999 * 111.00441 * 271.93809 * 14 12 2 32 32 H 1.08999 * 111.00337 * 35.75499 * 14 12 2 33 33 H 1.08995 * 110.36657 * 81.84558 * 15 14 12 34 34 H 1.08997 * 110.37138 * 204.17226 * 15 14 12 35 35 H 0.97001 * 120.00974 * 180.02562 * 20 19 17 36 36 H 1.09007 * 109.87739 * 239.55583 * 25 16 15 37 37 H 1.09000 * 109.88306 * 118.39036 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3558 1.1672 -0.0005 5 6 1.4056 2.4373 0.0006 6 6 1.9482 3.6916 -0.1854 7 6 0.8958 4.6106 -0.1109 8 9 0.9992 5.9512 -0.2432 9 6 -0.2454 3.9173 0.1230 10 7 0.0519 2.5946 0.1928 11 1 -0.5838 1.8794 0.3513 12 6 2.1974 -1.2687 0.0006 13 1 3.2719 -1.0950 -0.0570 14 6 1.8435 -2.1065 1.2576 15 6 2.1163 -3.5476 0.7592 16 7 1.6777 -3.5488 -0.6488 17 6 1.2889 -4.6511 -1.3623 18 1 0.9841 -4.5471 -2.3932 19 6 1.2868 -5.9019 -0.7605 20 7 1.6578 -6.0286 0.4958 21 14 0.7572 -7.4058 -1.7341 22 1 1.6496 -7.5743 -2.9090 23 1 0.8428 -8.6103 -0.8698 24 1 -0.6426 -7.2279 -2.1972 25 6 1.7274 -2.1711 -1.1598 26 1 -0.3635 0.1122 1.0215 27 1 -0.3633 0.8285 -0.6080 28 1 -0.3634 -0.9408 -0.4136 29 1 2.9893 3.9210 -0.3585 30 1 -1.2300 4.3468 0.2353 31 1 2.4957 -1.8520 2.0931 32 1 0.7957 -1.9790 1.5297 33 1 3.1798 -3.7767 0.8250 34 1 1.5360 -4.2657 1.3385 35 1 1.6566 -6.9027 0.9163 36 1 0.7357 -1.8626 -1.4910 37 1 2.4334 -2.1080 -1.9879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033271726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = 24.853058 kcal Electronic energy + Delta-G solvation = -21915.071802 eV Core-core repulsion = 18416.907564 eV Total energy + Delta-G solvation = -3498.164238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.68530 -41.70119 -39.43617 -37.37298 -35.10148 -32.37652 -31.14081 -29.83736 -29.06269 -27.58656 -26.97624 -24.66747 -22.89733 -21.29633 -20.52585 -20.30191 -19.61417 -18.03070 -17.08681 -16.86972 -16.02725 -15.97482 -15.36985 -15.24902 -14.92413 -14.66972 -14.19968 -13.86562 -13.74402 -13.62772 -13.28015 -13.12548 -12.51069 -12.26568 -11.90301 -11.84787 -11.63314 -11.14299 -10.99842 -10.85128 -10.59013 -10.20654 -9.97806 -9.90779 -9.63929 -9.17593 -8.73669 -8.65543 -8.43662 -6.93619 -5.73122 -3.16215 1.16590 2.20255 2.66229 2.91516 3.22054 3.35479 3.40297 3.41436 4.13346 4.42743 4.60015 4.64461 4.71726 5.03529 5.03945 5.25902 5.34719 5.39017 5.45462 5.49443 5.59021 5.73370 5.77322 6.09374 6.17347 6.25752 6.40263 6.46901 6.59955 6.60462 6.83119 6.94485 7.34155 7.43009 7.53569 7.75799 8.08039 8.26484 9.12942 9.73493 10.36970 11.30437 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.044608 B = 0.003425 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.537864 B = 8172.343326 C = 8369.475018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.596 5.596 3 C 0.586 3.414 4 O -0.525 6.525 5 C -0.016 4.016 6 C -0.135 4.135 7 C 0.002 3.998 8 F -0.129 7.129 9 C -0.010 4.010 10 N -0.533 5.533 11 H 0.431 0.569 12 C 0.126 3.874 13 H 0.108 0.892 14 C -0.151 4.151 15 C 0.153 3.847 16 N -0.602 5.602 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.129 3.871 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.181 0.819 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.110 0.890 35 H 0.254 0.746 36 H 0.028 0.972 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 17.132 1.322 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.328 5.328 3 C 0.374 3.626 4 O -0.401 6.401 5 C -0.130 4.130 6 C -0.162 4.162 7 C -0.024 4.024 8 F -0.108 7.108 9 C -0.146 4.146 10 N -0.139 5.139 11 H 0.279 0.721 12 C 0.023 3.977 13 H 0.126 0.874 14 C -0.191 4.191 15 C 0.028 3.972 16 N -0.329 5.329 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.002 3.998 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.799 16.732 1.378 17.762 hybrid contribution -0.658 -0.714 -0.484 1.085 sum -6.457 16.017 0.894 17.293 Atomic orbital electron populations 1.22213 0.80913 1.04777 1.01302 1.47745 1.06436 1.06182 1.72464 1.16995 0.86790 0.81745 0.77107 1.90852 1.12353 1.86414 1.50454 1.20353 0.82825 0.95250 1.14601 1.21298 0.99890 0.89399 1.05566 1.16510 0.94224 0.78027 1.13633 1.91445 1.96616 1.28070 1.94656 1.21837 0.99745 0.83555 1.09486 1.43075 1.08235 1.07983 1.54567 0.72086 1.22342 0.97236 0.80720 0.97370 0.87413 1.23389 1.00721 0.99034 0.95958 1.21966 0.98294 0.91197 0.85743 1.44443 1.77953 1.01037 1.09437 1.19018 1.37176 0.84670 0.94597 0.90470 1.24794 1.01558 0.97556 0.96514 1.69761 1.53633 1.22610 1.10969 0.86135 0.78367 0.82123 0.78742 1.21123 1.21509 1.21142 1.21537 0.97858 0.86384 0.94048 0.92057 0.91307 0.88045 0.82310 0.80141 0.91881 0.91884 0.96558 0.87204 0.93540 0.95418 0.95432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 7.63 59.84 0.46 0.99 16 2 N -0.60 -8.62 2.89 -173.39 -0.50 -9.12 16 3 C 0.59 8.97 7.64 -12.86 -0.10 8.87 16 4 O -0.52 -9.86 16.27 5.19 0.08 -9.77 16 5 C -0.02 -0.20 6.65 -81.98 -0.55 -0.74 16 6 C -0.13 -1.67 10.67 -39.06 -0.42 -2.09 16 7 C 0.00 0.02 7.98 -39.91 -0.32 -0.30 16 8 F -0.13 -1.51 17.32 2.25 0.04 -1.47 16 9 C -0.01 -0.08 11.90 -16.77 -0.20 -0.28 16 10 N -0.53 -4.69 5.06 -9.31 -0.05 -4.74 16 11 H 0.43 2.74 4.91 -40.82 -0.20 2.53 16 12 C 0.13 2.24 3.35 -66.10 -0.22 2.01 16 13 H 0.11 2.08 7.01 -51.93 -0.36 1.72 16 14 C -0.15 -2.76 6.65 -24.58 -0.16 -2.93 16 15 C 0.15 3.59 5.89 -2.50 -0.01 3.57 16 16 N -0.60 -14.86 3.40 -170.03 -0.58 -15.43 16 17 C -0.23 -6.11 10.27 -15.06 -0.15 -6.27 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.23 5.49 -17.44 -0.10 -0.33 16 20 N -0.92 -26.08 10.09 55.49 0.56 -25.52 16 21 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 2.60 6.76 -3.06 -0.02 2.58 16 26 H 0.06 0.51 7.72 -51.93 -0.40 0.11 16 27 H 0.07 0.55 5.19 -51.93 -0.27 0.28 16 28 H 0.10 1.19 6.18 -51.93 -0.32 0.87 16 29 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.08 7.34 -51.93 -0.38 0.69 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.03 0.53 6.02 -51.93 -0.31 0.22 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -31.88 303.74 -6.90 -38.78 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.21 Total: 1.17 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.79 Total: 5.09 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.57 Total: -54.81 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.88 -6.90 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033271726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.633 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds