Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99960 * 2 1 4 4 O 1.21696 * 120.00061 * 186.48026 * 3 2 1 5 5 C 1.46662 * 120.00027 * 6.48719 * 3 2 1 6 6 C 1.37922 * 126.21221 * 187.82482 * 5 3 2 7 7 C 1.39926 * 107.10786 * 179.97438 * 6 5 3 8 8 F 1.35101 * 126.07961 * 179.97438 * 7 6 5 9 9 C 1.35564 * 107.84346 * 0.02562 * 7 6 5 10 10 N 1.35747 * 108.83373 * 359.72881 * 9 7 6 11 11 H 0.96996 * 125.68511 * 180.29218 * 10 9 7 12 12 C 1.46502 * 119.99554 * 180.02562 * 2 1 3 13 13 H 1.09005 * 110.88078 * 183.87823 * 12 2 1 14 14 C 1.55153 * 111.00688 * 59.99921 * 12 2 1 15 15 C 1.54331 * 102.93852 * 206.38223 * 14 12 2 16 16 N 1.47018 * 107.27025 * 22.19263 * 15 14 12 17 17 C 1.36942 * 125.64465 * 181.01968 * 16 15 14 18 18 H 1.07995 * 119.99945 * 175.52311 * 17 16 15 19 19 C 1.38811 * 119.99838 * 355.52349 * 17 16 15 20 20 N 1.31625 * 119.99547 * 213.78390 * 19 17 16 21 21 Si 1.86800 * 120.00279 * 33.51021 * 19 17 16 22 22 H 1.48497 * 109.46820 * 275.61851 * 21 19 17 23 23 H 1.48503 * 109.46888 * 35.61458 * 21 19 17 24 24 H 1.48501 * 109.46938 * 155.61600 * 21 19 17 25 25 C 1.47419 * 108.70544 * 1.28764 * 16 15 14 26 26 H 1.08999 * 109.46754 * 275.58819 * 1 2 3 27 27 H 1.08996 * 109.47173 * 35.58952 * 1 2 3 28 28 H 1.09000 * 109.47011 * 155.59297 * 1 2 3 29 29 H 1.08000 * 126.45078 * 0.02867 * 6 5 3 30 30 H 1.08003 * 125.58522 * 180.02562 * 9 7 6 31 31 H 1.08995 * 110.72043 * 88.02332 * 14 12 2 32 32 H 1.09000 * 110.87249 * 324.81376 * 14 12 2 33 33 H 1.08998 * 109.88065 * 262.77003 * 15 14 12 34 34 H 1.09007 * 110.00678 * 141.68193 * 15 14 12 35 35 H 0.96998 * 120.00407 * 354.71632 * 20 19 17 36 36 H 1.09001 * 110.36907 * 94.48423 * 25 16 15 37 37 H 1.09004 * 110.36782 * 216.80456 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3500 1.1705 -0.1189 5 6 1.4126 2.4332 0.1435 6 6 1.9460 3.6981 0.0104 7 6 0.9056 4.6084 0.2268 8 9 1.0058 5.9552 0.1881 9 6 -0.2206 3.8988 0.4833 10 7 0.0740 2.5747 0.4298 11 1 -0.5539 1.8492 0.5717 12 6 2.1975 -1.2688 -0.0006 13 1 3.2717 -1.0973 0.0684 14 6 1.8483 -2.1120 -1.2553 15 6 2.1073 -3.5582 -0.7828 16 7 2.0280 -3.5585 0.6852 17 6 2.2185 -4.6467 1.4945 18 1 2.2100 -4.5294 2.5680 19 6 2.4226 -5.9005 0.9349 20 7 1.9661 -6.9748 1.5431 21 14 3.3386 -6.0625 -0.6850 22 1 2.3928 -5.8565 -1.8111 23 1 4.4149 -5.0413 -0.7494 24 1 3.9363 -7.4184 -0.7822 25 6 1.7030 -2.1949 1.1415 26 1 -0.3633 0.1001 1.0228 27 1 -0.3633 0.8357 -0.5980 28 1 -0.3633 -0.9358 -0.4246 29 1 2.9732 3.9406 -0.2187 30 1 -1.1940 4.3180 0.6910 31 1 2.5038 -1.8550 -2.0873 32 1 0.8030 -1.9788 -1.5342 33 1 3.0990 -3.8800 -1.1006 34 1 1.3511 -4.2263 -1.1951 35 1 1.5549 -6.8989 2.4183 36 1 0.6272 -2.0878 1.2810 37 1 2.2308 -1.9690 2.0680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033271727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = 25.549305 kcal Electronic energy + Delta-G solvation = -21963.417060 eV Core-core repulsion = 18465.283013 eV Total energy + Delta-G solvation = -3498.134046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.74633 -41.77107 -39.58693 -37.65617 -35.31447 -32.52988 -31.24635 -30.12236 -29.22746 -28.10641 -27.26907 -24.28231 -22.87922 -21.38293 -20.81380 -20.56241 -19.84249 -18.18068 -17.52393 -16.98689 -16.23293 -16.10935 -15.55287 -15.34339 -15.17598 -14.97155 -14.18931 -13.91588 -13.76650 -13.55792 -13.38853 -13.32888 -13.11665 -12.70932 -12.36694 -12.09274 -11.92142 -11.37321 -11.12118 -11.08486 -10.74945 -10.19881 -10.11747 -9.72489 -9.31443 -9.24469 -8.79228 -8.55248 -8.37066 -7.16406 -6.45521 -3.18727 1.07099 2.12781 2.56515 2.78294 3.10971 3.38694 3.49960 3.66013 4.04641 4.50503 4.55494 4.58154 4.60366 4.83196 4.92636 4.96865 5.09413 5.17955 5.21838 5.28353 5.37238 5.46902 5.65791 5.73944 5.79960 6.09938 6.12150 6.25786 6.36869 6.46987 6.51787 6.62501 6.69995 6.85747 7.21030 7.63032 7.95971 8.27316 8.97150 9.54429 10.19915 11.05602 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.045510 B = 0.003633 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.106266 B = 7706.000695 C = 7924.207785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.600 5.600 3 C 0.588 3.412 4 O -0.521 6.521 5 C -0.018 4.018 6 C -0.133 4.133 7 C 0.002 3.998 8 F -0.128 7.128 9 C -0.007 4.007 10 N -0.532 5.532 11 H 0.430 0.570 12 C 0.122 3.878 13 H 0.113 0.887 14 C -0.137 4.137 15 C 0.110 3.890 16 N -0.606 5.606 17 C -0.345 4.345 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.905 5.905 21 Si 1.060 2.940 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.298 1.298 25 C 0.136 3.864 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.160 0.840 30 H 0.182 0.818 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.028 0.972 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 20.383 -4.437 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.332 5.332 3 C 0.376 3.624 4 O -0.396 6.396 5 C -0.133 4.133 6 C -0.160 4.160 7 C -0.024 4.024 8 F -0.107 7.107 9 C -0.144 4.144 10 N -0.137 5.137 11 H 0.277 0.723 12 C 0.018 3.982 13 H 0.131 0.869 14 C -0.176 4.176 15 C -0.015 4.015 16 N -0.334 5.334 17 C -0.471 4.471 18 H 0.097 0.903 19 C -0.216 4.216 20 N -0.545 5.545 21 Si 0.893 3.107 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.226 1.226 25 C 0.008 3.992 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.498 19.038 -5.538 20.865 hybrid contribution -0.853 1.156 1.266 1.915 sum -7.351 20.193 -4.272 21.910 Atomic orbital electron populations 1.22132 0.80767 1.04415 1.01458 1.47666 1.06427 1.06068 1.73068 1.16994 0.86679 0.81682 0.77070 1.90865 1.12833 1.86235 1.49697 1.20315 0.83605 0.95069 1.14264 1.21314 1.00068 0.89360 1.05222 1.16508 0.94723 0.77761 1.13366 1.91450 1.96590 1.27398 1.95279 1.21839 1.00042 0.83240 1.09259 1.42888 1.09222 1.07712 1.53858 0.72342 1.22662 0.97846 0.80751 0.96915 0.86878 1.22916 1.01531 0.95828 0.97301 1.21711 0.99397 0.94113 0.86268 1.44707 1.83453 1.04864 1.00330 1.19911 1.51585 0.85455 0.90150 0.90306 1.25642 0.99560 0.90865 1.05494 1.70939 1.36742 1.31179 1.15652 0.83925 0.77027 0.74154 0.75626 1.21910 1.21964 1.22553 1.21790 0.97512 0.85055 0.94819 0.91972 0.91174 0.88615 0.82270 0.80073 0.90896 0.91117 0.94649 0.93699 0.92504 0.95436 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 7.38 59.85 0.44 0.93 16 2 N -0.60 -7.90 2.91 -172.89 -0.50 -8.40 16 3 C 0.59 8.44 7.63 -12.86 -0.10 8.34 16 4 O -0.52 -9.39 16.30 5.19 0.08 -9.30 16 5 C -0.02 -0.21 6.63 -81.98 -0.54 -0.75 16 6 C -0.13 -1.56 10.67 -39.07 -0.42 -1.97 16 7 C 0.00 0.02 7.98 -39.91 -0.32 -0.30 16 8 F -0.13 -1.44 17.32 2.25 0.04 -1.40 16 9 C -0.01 -0.05 11.90 -16.77 -0.20 -0.25 16 10 N -0.53 -4.24 5.08 -9.31 -0.05 -4.29 16 11 H 0.43 2.33 4.93 -40.82 -0.20 2.13 16 12 C 0.12 2.02 3.44 -65.66 -0.23 1.79 16 13 H 0.11 2.11 7.05 -51.93 -0.37 1.74 16 14 C -0.14 -2.22 6.49 -24.90 -0.16 -2.38 16 15 C 0.11 2.34 4.86 -3.06 -0.01 2.33 16 16 N -0.61 -14.55 3.38 -169.93 -0.57 -15.12 16 17 C -0.34 -9.73 10.40 -15.06 -0.16 -9.88 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 19 C -0.01 -0.40 5.43 -17.43 -0.09 -0.49 16 20 N -0.91 -27.83 13.70 55.49 0.76 -27.07 16 21 Si 1.06 26.34 24.68 -169.99 -4.20 22.14 16 22 H -0.29 -6.76 6.39 56.52 0.36 -6.40 16 23 H -0.29 -6.99 6.54 56.52 0.37 -6.62 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 25 C 0.14 2.61 6.79 -2.41 -0.02 2.60 16 26 H 0.06 0.44 7.45 -51.93 -0.39 0.05 16 27 H 0.07 0.45 5.68 -51.93 -0.29 0.16 16 28 H 0.10 0.87 6.36 -51.93 -0.33 0.54 16 29 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.18 0.73 8.06 -52.48 -0.42 0.30 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.98 6.48 -51.93 -0.34 0.65 16 33 H 0.04 0.80 4.41 -51.93 -0.23 0.57 16 34 H 0.05 1.00 6.95 -51.92 -0.36 0.63 16 35 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 36 H 0.03 0.50 6.95 -51.93 -0.36 0.14 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -34.08 298.45 -5.95 -40.03 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.20 Total: -1.04 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.80 Total: -0.05 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.36 Total: -54.88 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -4.20 Total: 22.14 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.08 -5.95 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033271727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.581 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds