Wall clock time and date at job start Tue Mar 31 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46847 * 2 1 4 4 C 1.52998 * 109.47150 * 239.99976 * 2 1 3 5 5 C 1.50703 * 109.47195 * 174.72108 * 4 2 1 6 6 C 1.38231 * 120.00417 * 99.50400 * 5 4 2 7 7 C 1.38223 * 120.00909 * 179.76952 * 6 5 4 8 8 C 1.38262 * 120.02985 * 0.51049 * 7 6 5 9 9 C 1.38198 * 120.00888 * 359.74467 * 8 7 6 10 10 C 1.38335 * 120.00517 * 279.78293 * 5 4 2 11 11 Cl 1.73596 * 120.01433 * 359.95608 * 10 5 4 12 12 N 1.46898 * 109.47073 * 119.99677 * 2 1 3 13 13 C 1.46897 * 111.00019 * 273.20164 * 12 2 1 14 14 C 1.53003 * 109.46950 * 179.97438 * 13 12 2 15 15 C 1.53004 * 109.47230 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47119 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99910 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99763 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00025 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46959 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47171 * 120.00114 * 20 18 16 23 23 H 1.48501 * 109.46922 * 240.00031 * 20 18 16 24 24 H 1.08993 * 109.47227 * 60.00120 * 1 2 3 25 25 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47271 * 299.99549 * 1 2 3 27 27 H 1.08999 * 109.47345 * 294.72142 * 4 2 1 28 28 H 1.09005 * 109.47220 * 54.72171 * 4 2 1 29 29 H 1.07998 * 119.99584 * 0.02562 * 6 5 4 30 30 H 1.08009 * 119.98215 * 180.27849 * 7 6 5 31 31 H 1.07994 * 119.99467 * 179.76558 * 8 7 6 32 32 H 1.07996 * 120.00314 * 179.97438 * 9 8 7 33 33 H 1.00909 * 110.99259 * 149.25342 * 12 2 1 34 34 H 1.09004 * 109.47183 * 60.00953 * 13 12 2 35 35 H 1.08999 * 109.47803 * 300.00318 * 13 12 2 36 36 H 1.09001 * 109.47752 * 300.00762 * 14 13 12 37 37 H 1.09007 * 109.46777 * 60.00619 * 14 13 12 38 38 H 1.09000 * 109.46810 * 300.00613 * 15 14 13 39 39 H 1.08999 * 109.46557 * 60.00570 * 15 14 13 40 40 H 0.97009 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5414 -0.6090 -1.3163 6 6 4.3327 -1.6616 -0.8960 7 6 5.7096 -1.5607 -0.9620 8 6 6.2965 -0.4030 -1.4384 9 6 5.5064 0.6520 -1.8540 10 6 4.1279 0.5495 -1.7932 11 17 3.1348 1.8741 -2.3155 12 7 2.0197 -0.6924 1.1995 13 6 2.1229 0.2325 2.3360 14 6 2.6343 -0.5235 3.5640 15 6 2.7413 0.4397 4.7479 16 6 3.2455 -0.3049 5.9572 17 1 3.4679 -1.3594 5.8881 18 6 3.4230 0.3603 7.1518 19 7 3.1517 1.6444 7.2360 20 14 4.0487 -0.5624 8.6507 21 1 4.2766 -1.9863 8.2959 22 1 5.3242 0.0445 9.1086 23 1 3.0420 -0.4790 9.7391 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7560 -1.7726 -1.2032 28 1 1.6015 -0.2649 -2.1367 29 1 3.8749 -2.5646 -0.5199 30 1 6.3274 -2.3851 -0.6376 31 1 7.3724 -0.3233 -1.4862 32 1 5.9649 1.5563 -2.2258 33 1 2.9035 -1.1450 1.0201 34 1 1.1410 0.6537 2.5521 35 1 2.8166 1.0361 2.0887 36 1 1.9403 -1.3269 3.8111 37 1 3.6161 -0.9450 3.3482 38 1 3.4350 1.2433 4.5010 39 1 1.7593 0.8608 4.9635 40 1 3.2769 2.1125 8.0764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116289066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:50 Heat of formation + Delta-G solvation = -11.957705 kcal Electronic energy + Delta-G solvation = -19393.959502 eV Core-core repulsion = 16426.075748 eV Total energy + Delta-G solvation = -2967.883754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84727 -37.19442 -36.58969 -34.28896 -32.63891 -31.32660 -30.89988 -29.43587 -26.68133 -25.77259 -22.97518 -22.61835 -21.74103 -20.46253 -19.80486 -17.22716 -16.30921 -16.08109 -15.65436 -15.54375 -14.72399 -14.40808 -14.13864 -14.03845 -13.87177 -13.37721 -12.72127 -12.48027 -12.24092 -12.09860 -12.03932 -11.77872 -11.66132 -11.45990 -11.36417 -11.28991 -10.92132 -10.77191 -10.65124 -10.49595 -10.40064 -9.64220 -9.29831 -9.09980 -8.99191 -8.81004 -8.31014 -8.09136 -5.95884 -3.97761 0.95309 1.05335 1.98016 3.33451 3.40658 3.41538 3.45229 4.39266 4.45627 4.51089 4.60172 4.77543 4.98320 5.07127 5.14955 5.26920 5.38831 5.39950 5.51825 5.63877 5.72895 5.80784 5.82794 5.92383 6.00181 6.03034 6.11569 6.19164 6.25339 6.34559 6.44309 6.59713 6.78303 6.84994 7.19325 7.43768 7.71629 7.74096 7.89198 8.05041 8.48494 9.09751 9.66046 11.15650 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.003699 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.555117 B = 7568.210091 C = 8122.906942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.048 0.952 4 C -0.088 4.088 5 C -0.075 4.075 6 C -0.106 4.106 7 C -0.110 4.110 8 C -0.113 4.113 9 C -0.110 4.110 10 C -0.034 4.034 11 Cl -0.069 7.069 12 N -0.686 5.686 13 C 0.060 3.940 14 C -0.106 4.106 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.336 0.664 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -3.837 -22.546 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.066 0.934 4 C -0.125 4.125 5 C -0.076 4.076 6 C -0.124 4.124 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.128 4.128 10 C -0.061 4.061 11 Cl -0.040 7.040 12 N -0.319 5.319 13 C -0.069 4.069 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.124 -3.797 -22.294 22.643 hybrid contribution 1.164 0.340 0.660 1.381 sum 2.288 -3.457 -21.634 22.028 Atomic orbital electron populations 1.21764 0.94375 1.02201 1.01204 1.21482 0.95892 0.96254 0.88790 0.93447 1.20923 0.89718 1.02798 0.99096 1.19854 0.96837 0.92575 0.98355 1.21148 0.93580 0.98473 0.99210 1.21297 0.94957 0.98126 0.98429 1.21128 1.00076 0.93051 0.98854 1.21059 0.91428 0.99838 1.00500 1.20844 0.91682 0.90053 1.03491 1.98364 1.70071 1.46569 1.89007 1.60709 1.34310 1.32263 1.04620 1.22148 1.00211 0.93670 0.90837 1.21611 0.99149 0.99409 0.94199 1.19068 0.97037 0.94176 0.91304 1.21296 1.43475 0.95717 0.95014 0.92646 1.25029 0.95724 0.94864 0.98916 1.69984 1.49277 1.08375 1.25997 0.86554 0.78474 0.80069 0.83020 1.19726 1.21078 1.21025 0.93001 0.92068 0.92337 0.89721 0.89880 0.84659 0.85217 0.85158 0.85074 0.84541 0.91517 0.95989 0.92594 0.93863 0.96880 0.96589 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.44 37.16 0.35 -1.30 16 2 C 0.09 1.11 2.58 -67.71 -0.17 0.94 16 3 H 0.05 0.68 6.96 -51.93 -0.36 0.32 16 4 C -0.09 -0.94 4.39 -27.88 -0.12 -1.06 16 5 C -0.08 -0.84 4.62 -104.59 -0.48 -1.32 16 6 C -0.11 -1.08 8.28 -39.59 -0.33 -1.41 16 7 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 8 C -0.11 -1.06 10.05 -39.59 -0.40 -1.45 16 9 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 10 C -0.03 -0.39 6.31 -39.50 -0.25 -0.64 16 11 Cl -0.07 -0.77 26.68 -51.86 -1.38 -2.15 16 12 N -0.69 -10.45 6.32 -106.73 -0.67 -11.12 16 13 C 0.06 1.10 5.48 -3.82 -0.02 1.08 16 14 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.77 7.57 -51.93 -0.39 0.38 16 27 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 28 H 0.08 0.83 7.34 -51.93 -0.38 0.44 16 29 H 0.14 1.20 8.02 -52.49 -0.42 0.78 16 30 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.34 4.90 6.28 -39.29 -0.25 4.65 16 34 H 0.07 1.25 7.56 -51.93 -0.39 0.85 16 35 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -31.06 341.99 -10.47 -41.54 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.38 Total: 0.27 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -2.91 Total: -23.90 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.06 Total: -37.89 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.38 Total: -2.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.06 -10.47 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116289066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.578 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds