Wall clock time and date at job start Tue Mar 31 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46847 * 2 1 4 4 C 1.52998 * 109.47150 * 239.99976 * 2 1 3 5 5 C 1.50703 * 109.47195 * 174.72108 * 4 2 1 6 6 C 1.38231 * 120.00417 * 99.50400 * 5 4 2 7 7 C 1.38223 * 120.00909 * 179.76952 * 6 5 4 8 8 C 1.38262 * 120.02985 * 0.51049 * 7 6 5 9 9 C 1.38198 * 120.00888 * 359.74467 * 8 7 6 10 10 C 1.38335 * 120.00517 * 279.78293 * 5 4 2 11 11 Cl 1.73596 * 120.01433 * 359.95608 * 10 5 4 12 12 N 1.46898 * 109.47073 * 119.99677 * 2 1 3 13 13 C 1.46897 * 111.00019 * 273.20164 * 12 2 1 14 14 C 1.53003 * 109.46950 * 179.97438 * 13 12 2 15 15 C 1.53004 * 109.47230 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47119 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99910 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99763 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00025 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46959 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47171 * 120.00114 * 20 18 16 23 23 H 1.48501 * 109.46922 * 240.00031 * 20 18 16 24 24 H 1.08993 * 109.47227 * 60.00120 * 1 2 3 25 25 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47271 * 299.99549 * 1 2 3 27 27 H 1.08999 * 109.47345 * 294.72142 * 4 2 1 28 28 H 1.09005 * 109.47220 * 54.72171 * 4 2 1 29 29 H 1.07998 * 119.99584 * 0.02562 * 6 5 4 30 30 H 1.08009 * 119.98215 * 180.27849 * 7 6 5 31 31 H 1.07994 * 119.99467 * 179.76558 * 8 7 6 32 32 H 1.07996 * 120.00314 * 179.97438 * 9 8 7 33 33 H 1.00909 * 110.99259 * 149.25342 * 12 2 1 34 34 H 1.09004 * 109.47183 * 60.00953 * 13 12 2 35 35 H 1.08999 * 109.47803 * 300.00318 * 13 12 2 36 36 H 1.09001 * 109.47752 * 300.00762 * 14 13 12 37 37 H 1.09007 * 109.46777 * 60.00619 * 14 13 12 38 38 H 1.09000 * 109.46810 * 300.00613 * 15 14 13 39 39 H 1.08999 * 109.46557 * 60.00570 * 15 14 13 40 40 H 0.97009 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5414 -0.6090 -1.3163 6 6 4.3327 -1.6616 -0.8960 7 6 5.7096 -1.5607 -0.9620 8 6 6.2965 -0.4030 -1.4384 9 6 5.5064 0.6520 -1.8540 10 6 4.1279 0.5495 -1.7932 11 17 3.1348 1.8741 -2.3155 12 7 2.0197 -0.6924 1.1995 13 6 2.1229 0.2325 2.3360 14 6 2.6343 -0.5235 3.5640 15 6 2.7413 0.4397 4.7479 16 6 3.2455 -0.3049 5.9572 17 1 3.4679 -1.3594 5.8881 18 6 3.4230 0.3603 7.1518 19 7 3.1517 1.6444 7.2360 20 14 4.0487 -0.5624 8.6507 21 1 4.2766 -1.9863 8.2959 22 1 5.3242 0.0445 9.1086 23 1 3.0420 -0.4790 9.7391 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7560 -1.7726 -1.2032 28 1 1.6015 -0.2649 -2.1367 29 1 3.8749 -2.5646 -0.5199 30 1 6.3274 -2.3851 -0.6376 31 1 7.3724 -0.3233 -1.4862 32 1 5.9649 1.5563 -2.2258 33 1 2.9035 -1.1450 1.0201 34 1 1.1410 0.6537 2.5521 35 1 2.8166 1.0361 2.0887 36 1 1.9403 -1.3269 3.8111 37 1 3.6161 -0.9450 3.3482 38 1 3.4350 1.2433 4.5010 39 1 1.7593 0.8608 4.9635 40 1 3.2769 2.1125 8.0764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116289066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:49 Heat of formation + Delta-G solvation = -28.606826 kcal Electronic energy + Delta-G solvation = -19394.681462 eV Core-core repulsion = 16426.075748 eV Total energy + Delta-G solvation = -2968.605714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65149 -38.36136 -37.41206 -36.04149 -34.33405 -32.57361 -31.70155 -30.86598 -27.84328 -27.35409 -24.43611 -23.69305 -22.68320 -22.00367 -21.10864 -18.49209 -17.98200 -17.15508 -16.74785 -16.51024 -16.38370 -15.76311 -15.57627 -14.96768 -14.69659 -14.54391 -14.25838 -13.92434 -13.52990 -13.43724 -13.12001 -12.98807 -12.79843 -12.76137 -12.54466 -12.48199 -12.30560 -12.19936 -12.12926 -11.84307 -11.56464 -11.47982 -11.37062 -11.06659 -10.56235 -9.86436 -9.61049 -9.37411 -8.19965 -6.31343 0.17919 0.29270 1.16306 1.40262 1.40858 1.54540 2.41336 2.65438 3.13216 3.22162 3.65740 3.82390 3.97191 4.11288 4.24572 4.28873 4.34139 4.41775 4.44923 4.52230 4.68490 4.73361 4.77160 4.86157 4.93990 4.95454 4.99329 5.14025 5.16866 5.23247 5.27914 5.41919 5.43382 5.49603 5.52286 5.73754 5.85059 5.87511 6.09468 6.27024 6.50583 6.85638 7.38139 8.92390 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.003699 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.555117 B = 7568.210091 C = 8122.906942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.033 0.967 4 C -0.079 4.079 5 C -0.090 4.090 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.052 4.052 11 Cl -0.075 7.075 12 N -0.681 5.681 13 C 0.074 3.926 14 C -0.090 4.090 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.061 0.939 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.341 0.659 34 H 0.060 0.940 35 H 0.011 0.989 36 H 0.056 0.944 37 H 0.048 0.952 38 H -0.013 1.013 39 H -0.010 1.010 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -5.534 -22.876 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.117 4.117 5 C -0.091 4.091 6 C -0.132 4.132 7 C -0.133 4.133 8 C -0.133 4.133 9 C -0.140 4.140 10 C -0.078 4.078 11 Cl -0.046 7.046 12 N -0.314 5.314 13 C -0.055 4.055 14 C -0.128 4.128 15 C -0.012 4.012 16 C -0.579 4.579 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.005 0.995 39 H 0.009 0.991 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.902 -5.504 -22.649 23.385 hybrid contribution 0.942 0.897 0.724 1.488 sum 2.843 -4.607 -21.925 22.584 Atomic orbital electron populations 1.21755 0.93571 1.02630 1.01368 1.21531 0.96466 0.95606 0.88776 0.94878 1.20841 0.89702 1.03143 0.97971 1.19968 0.97067 0.92952 0.99098 1.21389 0.94104 0.98676 0.99079 1.21635 0.95000 0.98813 0.97809 1.21474 1.01304 0.92624 0.97941 1.21317 0.91266 1.00747 1.00672 1.21059 0.92246 0.90183 1.04337 1.98354 1.70288 1.46880 1.89112 1.60661 1.34616 1.31462 1.04691 1.21832 0.99294 0.93428 0.90957 1.21356 0.99629 0.98242 0.93537 1.18969 0.94698 0.94380 0.93174 1.21712 1.43839 0.96206 0.96129 0.92092 1.26011 0.95685 0.95755 1.02476 1.70117 1.50133 1.10174 1.27149 0.85371 0.77951 0.79069 0.78493 1.18422 1.20309 1.20336 0.91075 0.91461 0.93986 0.88581 0.89070 0.83453 0.83068 0.82857 0.84045 0.83946 0.92150 0.97066 0.92569 0.93304 0.99463 0.99129 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.44 71.98 0.68 -2.42 16 2 C 0.09 2.14 2.58 44.92 0.12 2.26 16 3 H 0.03 0.94 6.96 -2.39 -0.02 0.92 16 4 C -0.08 -1.58 4.39 29.85 0.13 -1.45 16 5 C -0.09 -1.90 4.62 -19.84 -0.09 -1.99 16 6 C -0.11 -2.14 8.28 22.26 0.18 -1.95 16 7 C -0.11 -1.92 10.05 22.27 0.22 -1.70 16 8 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 9 C -0.12 -2.37 9.83 22.29 0.22 -2.15 16 10 C -0.05 -1.14 6.31 22.32 0.14 -1.00 16 11 Cl -0.08 -1.65 26.68 -2.72 -0.07 -1.72 16 12 N -0.68 -20.13 6.32 -491.57 -3.10 -23.24 16 13 C 0.07 2.74 5.48 86.30 0.47 3.22 16 14 C -0.09 -3.87 5.41 30.60 0.17 -3.71 16 15 C 0.03 1.40 4.97 29.85 0.15 1.54 16 16 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 17 H 0.06 3.41 7.74 -2.92 -0.02 3.39 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 19 N -0.94 -58.17 13.29 21.44 0.28 -57.89 16 20 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.09 7.57 -2.38 -0.02 1.07 16 27 H 0.10 1.69 8.01 -2.39 -0.02 1.67 16 28 H 0.09 1.67 7.34 -2.38 -0.02 1.66 16 29 H 0.15 2.30 8.02 -2.91 -0.02 2.28 16 30 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.34 9.50 6.28 -89.69 -0.56 8.93 16 34 H 0.06 2.30 7.56 -2.39 -0.02 2.28 16 35 H 0.01 0.43 8.05 -2.39 -0.02 0.42 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -66.56 341.99 2.89 -63.67 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.45 Total: 14.38 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 3.31 Total: -42.11 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -2.82 Total: -81.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -66.56 2.89 -63.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116289066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.066 kcal (2) G-P(sol) polarization free energy of solvation -66.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds