Wall clock time and date at job start Tue Mar 31 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47435 * 2 1 4 4 H 1.08996 * 109.47081 * 305.40050 * 3 2 1 5 5 C 1.50703 * 109.47211 * 185.39479 * 3 2 1 6 6 H 1.07996 * 120.00359 * 239.99957 * 5 3 2 7 7 C 1.37875 * 119.99566 * 60.00412 * 5 3 2 8 8 N 1.31513 * 120.00392 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99699 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47430 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47354 * 119.99999 * 9 7 5 12 12 H 1.48506 * 109.47149 * 239.99873 * 9 7 5 13 13 N 1.46902 * 109.46738 * 65.39653 * 3 2 1 14 14 C 1.46900 * 110.99541 * 205.70500 * 13 3 2 15 15 H 1.08999 * 109.47577 * 327.24488 * 14 13 3 16 16 C 1.53002 * 109.46729 * 87.24643 * 14 13 3 17 17 C 1.53001 * 109.47159 * 207.24099 * 14 13 3 18 18 C 1.50698 * 109.47000 * 65.00525 * 17 14 13 19 19 C 1.38244 * 120.00761 * 264.72473 * 18 17 14 20 20 C 1.38219 * 120.01083 * 179.76589 * 19 18 17 21 21 C 1.38268 * 120.02802 * 0.51177 * 20 19 18 22 22 C 1.38181 * 120.01225 * 359.74075 * 21 20 19 23 23 C 1.38335 * 120.01080 * 84.99785 * 18 17 14 24 24 Cl 1.73605 * 120.00605 * 359.95871 * 23 18 17 25 25 H 1.09001 * 109.47065 * 300.02537 * 1 2 3 26 26 H 1.09001 * 109.46950 * 60.02086 * 1 2 3 27 27 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47193 * 239.99889 * 2 1 3 29 29 H 1.09004 * 109.47330 * 120.00369 * 2 1 3 30 30 H 0.97004 * 120.00281 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00447 * 329.66491 * 13 3 2 32 32 H 1.08999 * 109.47217 * 304.10660 * 16 14 13 33 33 H 1.09008 * 109.47057 * 64.10828 * 16 14 13 34 34 H 1.09004 * 109.47042 * 184.10371 * 16 14 13 35 35 H 1.09002 * 109.47655 * 305.00601 * 17 14 13 36 36 H 1.09003 * 109.47673 * 185.00287 * 17 14 13 37 37 H 1.07993 * 119.99042 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.98259 * 180.26949 * 20 19 18 39 39 H 1.07996 * 119.98922 * 179.76849 * 21 20 19 40 40 H 1.08007 * 120.00878 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5999 1.9835 -0.8376 5 6 3.5412 1.4445 -0.1336 6 1 4.1515 1.8872 0.6395 7 6 4.1352 0.8812 -1.2430 8 7 3.3920 0.3416 -2.1843 9 14 5.9958 0.8843 -1.4089 10 1 6.5974 1.5475 -0.2243 11 1 6.4874 -0.5142 -1.4966 12 1 6.3819 1.6227 -2.6382 13 7 1.6596 2.0963 1.2593 14 6 1.5635 3.5521 1.0884 15 1 2.2945 3.8804 0.3495 16 6 0.1565 3.9177 0.6112 17 6 1.8440 4.2422 2.4248 18 6 3.2708 3.9823 2.8345 19 6 3.5644 2.9399 3.6938 20 6 4.8736 2.6985 4.0658 21 6 5.8890 3.5058 3.5873 22 6 5.5961 4.5513 2.7325 23 6 4.2863 4.7903 2.3555 24 17 3.9176 6.1032 1.2812 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8100 -0.0550 -2.9646 31 1 0.7963 1.7164 1.6176 32 1 -0.0710 3.3694 -0.3029 33 1 -0.5682 3.6556 1.3821 34 1 0.1064 4.9887 0.4145 35 1 1.1701 3.8484 3.1857 36 1 1.6860 5.3156 2.3198 37 1 2.7712 2.3120 4.0717 38 1 5.1029 1.8813 4.7336 39 1 6.9112 3.3190 3.8813 40 1 6.3892 5.1822 2.3591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116639469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:39 Heat of formation + Delta-G solvation = 0.458431 kcal Electronic energy + Delta-G solvation = -20713.330201 eV Core-core repulsion = 17745.984851 eV Total energy + Delta-G solvation = -2967.345349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -39.10519 -36.93100 -36.01054 -34.03832 -31.83297 -30.93328 -30.27382 -28.66304 -26.08691 -25.97995 -22.80542 -22.26841 -21.41662 -19.87149 -19.50135 -16.65005 -16.13656 -15.45100 -15.13609 -14.73104 -14.15715 -14.00241 -13.57789 -13.41656 -13.12978 -12.87034 -12.64210 -12.40215 -11.90798 -11.75313 -11.65320 -11.37683 -11.13901 -11.08983 -10.91166 -10.83270 -10.73184 -10.54844 -10.29264 -10.13297 -9.88174 -9.64907 -9.51266 -8.98689 -8.39433 -8.28012 -8.15127 -7.12140 -5.89323 -3.91449 1.61985 1.75831 2.57135 3.35119 3.43206 3.49811 4.08516 4.51803 5.08468 5.13936 5.30029 5.33911 5.41428 5.59956 5.70179 5.76163 5.82661 5.96031 5.99187 6.13969 6.18994 6.19693 6.22842 6.29752 6.42637 6.43348 6.58869 6.65574 6.74646 6.84159 6.87566 6.97256 7.14135 7.24868 7.25874 7.58230 7.84584 8.02168 8.39372 8.47986 8.85659 9.18051 9.73339 11.16224 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.008241 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.806465 B = 3396.687780 C = 4308.201718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.222 3.778 4 H 0.001 0.999 5 C -0.480 4.480 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.094 3.906 15 H 0.086 0.914 16 C -0.177 4.177 17 C -0.072 4.072 18 C -0.037 4.037 19 C -0.076 4.076 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.031 4.031 24 Cl -0.081 7.081 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.098 0.902 29 H 0.039 0.961 30 H 0.256 0.744 31 H 0.314 0.686 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 7.200 10.389 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.018 0.982 5 C -0.519 4.519 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.308 5.308 14 C -0.017 4.017 15 H 0.104 0.896 16 C -0.236 4.236 17 C -0.110 4.110 18 C -0.038 4.038 19 C -0.094 4.094 20 C -0.135 4.135 21 C -0.139 4.139 22 C -0.134 4.134 23 C -0.058 4.058 24 Cl -0.052 7.052 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.967 7.246 10.353 12.674 hybrid contribution 0.235 -0.008 -1.002 1.029 sum -0.732 7.238 9.350 11.847 Atomic orbital electron populations 1.21877 0.99749 0.99393 0.99601 1.21765 0.91070 1.00631 1.02920 1.19118 0.95309 0.89666 0.84481 0.98165 1.21239 0.91236 1.35429 1.03981 0.91986 1.24914 0.97653 0.95950 0.96007 1.69879 1.34364 1.40012 1.09692 0.86611 0.86562 0.77442 0.77923 1.19643 1.21325 1.21377 1.60773 1.35791 1.01409 1.32800 1.21399 0.95130 0.90252 0.94955 0.89616 1.22500 0.98663 1.01165 1.01291 1.20729 0.91812 1.00028 0.98436 1.19525 0.94998 0.93972 0.95292 1.20864 0.96520 0.95527 0.96511 1.21139 0.93083 0.98996 1.00268 1.20922 0.99172 0.95518 0.98314 1.20869 0.94506 0.99032 0.98959 1.20735 0.94595 0.93248 0.97202 1.98327 1.94973 1.47569 1.64376 0.94609 0.94000 0.94614 0.88386 0.94234 0.93361 0.86790 0.92507 0.93324 0.93127 0.91429 0.91279 0.85449 0.86179 0.86091 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.75 37.16 0.36 -2.47 16 2 C -0.13 -2.90 5.36 -26.73 -0.14 -3.04 16 3 C 0.22 5.33 1.83 -68.86 -0.13 5.21 16 4 H 0.00 0.02 7.27 -51.93 -0.38 -0.36 16 5 C -0.48 -13.05 8.54 -34.44 -0.29 -13.34 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.70 11.29 55.43 0.63 -25.07 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.68 -13.46 5.66 -100.95 -0.57 -14.03 16 14 C 0.09 1.69 2.37 -67.71 -0.16 1.53 16 15 H 0.09 1.84 7.44 -51.93 -0.39 1.46 16 16 C -0.18 -2.79 9.15 37.16 0.34 -2.45 16 17 C -0.07 -1.12 4.54 -27.88 -0.13 -1.24 16 18 C -0.04 -0.62 4.89 -104.58 -0.51 -1.13 16 19 C -0.08 -1.21 9.55 -39.59 -0.38 -1.59 16 20 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 21 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 22 C -0.11 -1.82 9.83 -39.55 -0.39 -2.21 16 23 C -0.03 -0.53 6.31 -39.50 -0.25 -0.78 16 24 Cl -0.08 -1.30 27.20 -51.86 -1.41 -2.71 16 25 H 0.03 0.61 6.45 -51.93 -0.33 0.27 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.31 5.76 6.21 -39.29 -0.24 5.51 16 32 H 0.06 0.98 7.57 -51.93 -0.39 0.59 16 33 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.94 8.05 -51.93 -0.42 0.53 16 36 H 0.07 1.00 7.13 -51.93 -0.37 0.63 16 37 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -28.42 337.64 -10.04 -38.45 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.18 Total: 5.77 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -2.57 Total: -24.43 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.05 Total: -39.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.41 Total: -2.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.42 -10.04 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116639469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.913 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds