Wall clock time and date at job start Tue Mar 31 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46963 * 2 1 4 4 N 1.46502 * 109.47412 * 119.99944 * 2 1 3 5 5 C 1.38820 * 120.00010 * 275.00320 * 4 2 1 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 2 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47152 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47083 * 119.99825 * 14 12 10 17 17 H 1.48502 * 109.47241 * 240.00067 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 2 19 19 C 1.50704 * 109.47192 * 240.00081 * 2 1 3 20 20 O 1.21276 * 119.99819 * 239.99742 * 19 2 1 21 21 N 1.34778 * 119.99946 * 60.00164 * 19 2 1 22 22 C 1.46498 * 119.99952 * 179.97438 * 21 19 2 23 23 C 1.52995 * 109.47265 * 179.97438 * 22 21 19 24 24 F 1.39900 * 109.47689 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47341 * 299.99536 * 1 2 3 26 26 H 1.09003 * 109.47028 * 60.00398 * 1 2 3 27 27 H 1.09003 * 109.46543 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99993 * 95.00263 * 4 2 1 29 29 H 1.08000 * 120.25538 * 0.02562 * 6 5 4 30 30 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 31 31 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 32 32 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 33 33 H 0.96999 * 120.00185 * 359.97438 * 21 19 2 34 34 H 1.08996 * 109.47388 * 299.99726 * 22 21 19 35 35 H 1.09009 * 109.47068 * 59.99695 * 22 21 19 36 36 H 1.08998 * 109.47590 * 300.00165 * 23 22 21 37 37 H 1.09003 * 109.46967 * 59.99675 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1510 0.0019 2.3920 6 6 1.8164 1.3583 2.4448 7 6 1.9490 2.0477 3.6398 8 6 2.4172 1.3676 4.7505 9 6 2.7316 0.0026 4.6351 10 6 3.2057 -0.7062 5.7620 11 1 3.3211 -0.2000 6.7090 12 6 3.5257 -2.0648 5.6509 13 7 3.3856 -2.6778 4.5045 14 14 4.1530 -3.0015 7.1403 15 1 4.2217 -2.0864 8.3078 16 1 3.2293 -4.1239 7.4442 17 1 5.5072 -3.5389 6.8528 18 7 2.5911 -0.6283 3.4644 19 6 2.0324 -0.7104 -1.2305 20 8 2.7296 -1.6964 -1.1192 21 7 1.7068 -0.2499 -2.4546 22 6 2.1956 -0.9401 -3.6508 23 6 1.6850 -0.2193 -4.9000 24 9 2.1523 -0.8781 -6.0423 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 2.2491 -1.6317 1.1526 29 1 1.4566 1.8648 1.5614 30 1 1.6963 3.0959 3.7018 31 1 2.5353 1.8782 5.6947 32 1 3.6069 -3.6190 4.4275 33 1 1.1488 0.5386 -2.5436 34 1 3.2856 -0.9397 -3.6506 35 1 1.8327 -1.9680 -3.6509 36 1 0.5951 -0.2201 -4.9000 37 1 2.0476 0.8086 -4.9000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116929085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:53 Heat of formation + Delta-G solvation = -49.190171 kcal Electronic energy + Delta-G solvation = -21280.953263 eV Core-core repulsion = 17779.578270 eV Total energy + Delta-G solvation = -3501.374993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.06409 -40.00645 -38.18365 -35.60292 -35.11680 -33.33740 -31.37957 -30.25071 -29.47478 -27.93835 -25.43581 -24.46921 -22.94687 -21.56424 -20.91354 -19.88420 -17.69333 -17.38274 -16.83150 -16.82158 -15.91913 -15.53236 -15.26068 -15.01290 -14.68409 -14.48721 -14.09296 -13.75217 -13.53723 -13.26466 -12.82541 -12.67014 -12.24755 -12.05622 -11.88858 -11.61440 -11.46558 -11.35737 -11.17329 -10.95280 -10.61813 -10.41200 -9.88831 -9.80735 -9.53573 -9.35349 -8.93061 -7.92189 -7.49188 -6.54987 -6.29849 -4.46125 2.58771 2.76835 2.88818 3.14342 3.18526 3.24259 3.30650 4.00974 4.11465 4.15482 4.33212 4.51242 4.67265 4.85176 4.93455 5.20878 5.26480 5.33944 5.56533 5.61622 5.89903 6.06567 6.11634 6.13936 6.29174 6.54258 6.84847 6.86350 6.91385 7.21355 7.27600 7.58993 7.79736 7.89919 8.09928 8.19227 8.35489 8.69989 8.81567 9.12224 10.26353 10.42488 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.003561 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.669924 B = 7860.301802 C = 8716.483452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.103 0.897 4 N -0.721 5.721 5 C 0.416 3.584 6 C -0.373 4.373 7 C -0.031 4.031 8 C -0.316 4.316 9 C 0.292 3.708 10 C -0.432 4.432 11 H 0.084 0.916 12 C 0.069 3.931 13 N -0.711 5.711 14 Si 0.905 3.095 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.529 5.529 19 C 0.513 3.487 20 O -0.521 6.521 21 N -0.733 5.733 22 C 0.087 3.913 23 C 0.055 3.945 24 F -0.208 7.208 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.406 0.594 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.270 0.730 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 5.021 -14.491 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.120 0.880 4 N -0.359 5.359 5 C 0.176 3.824 6 C -0.399 4.399 7 C -0.055 4.055 8 C -0.339 4.339 9 C 0.165 3.835 10 C -0.464 4.464 11 H 0.102 0.898 12 C -0.156 4.156 13 N -0.332 5.332 14 Si 0.729 3.271 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.199 1.199 18 N -0.250 5.250 19 C 0.299 3.701 20 O -0.395 6.395 21 N -0.388 5.388 22 C -0.038 4.038 23 C 0.000 4.000 24 F -0.189 7.189 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.243 0.757 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.927 3.329 -14.654 15.814 hybrid contribution -0.108 0.520 0.451 0.697 sum -5.035 3.848 -14.202 15.552 Atomic orbital electron populations 1.22281 0.94254 1.02951 1.02722 1.20429 0.94644 0.97303 0.83802 0.87955 1.43890 1.74120 1.12839 1.05086 1.18434 0.89958 0.87452 0.86600 1.20583 1.25711 0.94998 0.98580 1.20579 0.95169 0.96904 0.92874 1.21537 1.17230 0.96985 0.98184 1.18209 0.87358 0.88114 0.89796 1.19631 1.36900 0.93988 0.95898 0.89805 1.26072 0.94560 0.98313 0.96660 1.70157 1.29367 1.09944 1.23770 0.86320 0.78941 0.79764 0.82039 1.18463 1.19944 1.19936 1.68190 1.23178 1.36108 0.97551 1.21047 0.79812 0.84740 0.84533 1.90740 1.36591 1.25832 1.86318 1.45712 1.55137 1.32773 1.05181 1.21825 1.00948 0.97476 0.83506 1.22053 1.00256 0.96302 0.81415 1.92799 1.90774 1.83426 1.51944 0.90347 0.92301 0.92024 0.75693 0.89179 0.88937 0.88699 0.91842 0.76317 0.90245 0.90258 0.89999 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.30 37.16 0.35 -1.65 16 2 C 0.15 2.25 2.67 -69.08 -0.18 2.06 16 3 H 0.10 1.45 6.43 -51.92 -0.33 1.11 16 4 N -0.72 -15.00 5.11 -55.02 -0.28 -15.28 16 5 C 0.42 10.14 7.63 -155.33 -1.18 8.96 16 6 C -0.37 -8.26 8.84 -38.86 -0.34 -8.61 16 7 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 8 C -0.32 -7.96 9.83 -38.65 -0.38 -8.34 16 9 C 0.29 8.18 6.55 -85.00 -0.56 7.63 16 10 C -0.43 -11.83 9.14 -37.74 -0.34 -12.17 16 11 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 12 C 0.07 1.81 5.50 -17.35 -0.10 1.72 16 13 N -0.71 -19.46 11.46 55.55 0.64 -18.82 16 14 Si 0.91 19.07 29.56 -169.99 -5.02 14.04 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 N -0.53 -14.86 7.89 -10.33 -0.08 -14.94 16 19 C 0.51 7.39 7.22 -10.98 -0.08 7.31 16 20 O -0.52 -9.89 15.84 5.56 0.09 -9.81 16 21 N -0.73 -6.87 5.45 -60.30 -0.33 -7.20 16 22 C 0.09 0.78 6.13 -4.05 -0.02 0.75 16 23 C 0.06 0.33 7.67 37.16 0.28 0.62 16 24 F -0.21 -1.90 17.36 2.25 0.04 -1.86 16 25 H 0.08 1.09 7.65 -51.93 -0.40 0.69 16 26 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.41 9.22 7.91 -40.82 -0.32 8.89 16 29 H 0.09 1.69 6.04 -52.49 -0.32 1.37 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.27 6.75 8.29 -40.82 -0.34 6.42 16 33 H 0.40 2.35 7.89 -40.82 -0.32 2.02 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -33.30 321.04 -7.67 -40.97 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.59 Total: 10.89 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.96 Total: -2.84 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.05 Total: -56.24 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.30 -7.67 -40.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116929085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.219 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds