Wall clock time and date at job start Tue Mar 31 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46963 * 2 1 4 4 N 1.46502 * 109.47412 * 119.99944 * 2 1 3 5 5 C 1.38820 * 120.00010 * 275.00320 * 4 2 1 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 2 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47152 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47083 * 119.99825 * 14 12 10 17 17 H 1.48502 * 109.47241 * 240.00067 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 2 19 19 C 1.50704 * 109.47192 * 240.00081 * 2 1 3 20 20 O 1.21276 * 119.99819 * 239.99742 * 19 2 1 21 21 N 1.34778 * 119.99946 * 60.00164 * 19 2 1 22 22 C 1.46498 * 119.99952 * 179.97438 * 21 19 2 23 23 C 1.52995 * 109.47265 * 179.97438 * 22 21 19 24 24 F 1.39900 * 109.47689 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47341 * 299.99536 * 1 2 3 26 26 H 1.09003 * 109.47028 * 60.00398 * 1 2 3 27 27 H 1.09003 * 109.46543 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99993 * 95.00263 * 4 2 1 29 29 H 1.08000 * 120.25538 * 0.02562 * 6 5 4 30 30 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 31 31 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 32 32 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 33 33 H 0.96999 * 120.00185 * 359.97438 * 21 19 2 34 34 H 1.08996 * 109.47388 * 299.99726 * 22 21 19 35 35 H 1.09009 * 109.47068 * 59.99695 * 22 21 19 36 36 H 1.08998 * 109.47590 * 300.00165 * 23 22 21 37 37 H 1.09003 * 109.46967 * 59.99675 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1510 0.0019 2.3920 6 6 1.8164 1.3583 2.4448 7 6 1.9490 2.0477 3.6398 8 6 2.4172 1.3676 4.7505 9 6 2.7316 0.0026 4.6351 10 6 3.2057 -0.7062 5.7620 11 1 3.3211 -0.2000 6.7090 12 6 3.5257 -2.0648 5.6509 13 7 3.3856 -2.6778 4.5045 14 14 4.1530 -3.0015 7.1403 15 1 4.2217 -2.0864 8.3078 16 1 3.2293 -4.1239 7.4442 17 1 5.5072 -3.5389 6.8528 18 7 2.5911 -0.6283 3.4644 19 6 2.0324 -0.7104 -1.2305 20 8 2.7296 -1.6964 -1.1192 21 7 1.7068 -0.2499 -2.4546 22 6 2.1956 -0.9401 -3.6508 23 6 1.6850 -0.2193 -4.9000 24 9 2.1523 -0.8781 -6.0423 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 2.2491 -1.6317 1.1526 29 1 1.4566 1.8648 1.5614 30 1 1.6963 3.0959 3.7018 31 1 2.5353 1.8782 5.6947 32 1 3.6069 -3.6190 4.4275 33 1 1.1488 0.5386 -2.5436 34 1 3.2856 -0.9397 -3.6506 35 1 1.8327 -1.9680 -3.6509 36 1 0.5951 -0.2201 -4.9000 37 1 2.0476 0.8086 -4.9000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116929085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:52 Heat of formation + Delta-G solvation = -73.012563 kcal Electronic energy + Delta-G solvation = -21281.986280 eV Core-core repulsion = 17779.578270 eV Total energy + Delta-G solvation = -3502.408009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.67276 -41.21351 -39.96298 -36.97491 -36.28232 -35.18943 -32.87148 -31.98186 -30.61346 -29.43418 -27.32249 -25.51572 -23.81644 -23.40181 -22.43553 -21.24019 -19.30197 -18.91235 -17.80369 -17.44222 -17.37471 -16.74072 -16.52181 -16.24606 -16.11187 -15.77100 -15.48715 -15.10376 -14.74876 -14.66395 -14.34626 -14.13503 -13.61720 -13.51719 -13.27900 -12.89994 -12.71748 -12.63272 -12.56518 -12.25252 -12.10766 -11.89725 -11.69673 -11.35343 -11.03214 -10.68808 -10.29029 -9.83663 -9.41937 -8.33108 -8.21227 -6.47015 1.06307 1.36313 1.40392 1.45948 1.56190 1.56829 1.80484 2.24579 2.66978 2.93452 3.52454 3.59388 3.84933 4.01199 4.05293 4.13725 4.23865 4.33575 4.43184 4.63538 4.65396 4.79448 4.86581 4.89841 4.98661 5.03353 5.14010 5.24696 5.30330 5.36210 5.72722 5.98324 6.06752 6.23029 6.34412 6.57550 6.80784 6.92394 7.09425 7.20289 8.36415 8.52656 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.003561 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.669924 B = 7860.301802 C = 8716.483452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.120 0.880 4 N -0.726 5.726 5 C 0.396 3.604 6 C -0.360 4.360 7 C -0.027 4.027 8 C -0.344 4.344 9 C 0.258 3.742 10 C -0.472 4.472 11 H 0.087 0.913 12 C 0.023 3.977 13 N -0.755 5.755 14 Si 0.986 3.014 15 H -0.252 1.252 16 H -0.267 1.267 17 H -0.270 1.270 18 N -0.571 5.571 19 C 0.515 3.485 20 O -0.576 6.576 21 N -0.704 5.704 22 C 0.085 3.915 23 C 0.061 3.939 24 F -0.226 7.226 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.391 0.609 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.274 0.726 33 H 0.425 0.575 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 6.987 -15.929 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 H 0.137 0.863 4 N -0.361 5.361 5 C 0.156 3.844 6 C -0.385 4.385 7 C -0.052 4.052 8 C -0.367 4.367 9 C 0.131 3.869 10 C -0.504 4.504 11 H 0.106 0.894 12 C -0.198 4.198 13 N -0.377 5.377 14 Si 0.807 3.193 15 H -0.176 1.176 16 H -0.192 1.192 17 H -0.195 1.195 18 N -0.293 5.293 19 C 0.301 3.699 20 O -0.455 6.455 21 N -0.359 5.359 22 C -0.040 4.040 23 C 0.006 3.994 24 F -0.207 7.207 25 H 0.084 0.916 26 H 0.129 0.871 27 H 0.067 0.933 28 H 0.226 0.774 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.263 0.737 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.256 5.372 -16.174 18.155 hybrid contribution 0.214 0.029 0.702 0.734 sum -6.042 5.401 -15.472 17.466 Atomic orbital electron populations 1.22225 0.91631 1.02821 1.04617 1.20803 0.96448 0.97346 0.81963 0.86260 1.44131 1.73777 1.12330 1.05876 1.18901 0.89777 0.88816 0.86916 1.21002 1.23569 0.93980 0.99991 1.21051 0.93383 0.98798 0.91928 1.21709 1.18807 0.96400 0.99780 1.18680 0.88172 0.89694 0.90316 1.19975 1.38836 0.95290 0.96290 0.89446 1.27002 0.94166 0.98803 0.99843 1.70286 1.30907 1.10349 1.26161 0.85109 0.78217 0.78101 0.77908 1.17553 1.19223 1.19452 1.68123 1.24737 1.37798 0.98668 1.20957 0.79243 0.84012 0.85730 1.90731 1.39293 1.28326 1.87116 1.45393 1.53948 1.32789 1.03741 1.21872 1.00093 0.97459 0.84532 1.22181 1.01836 0.96549 0.78833 1.92767 1.91158 1.83988 1.52822 0.91635 0.87076 0.93255 0.77449 0.85002 0.84710 0.87961 0.91595 0.73657 0.91964 0.91620 0.87151 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.30 71.98 0.67 -2.65 16 2 C 0.14 4.04 2.67 44.25 0.12 4.16 16 3 H 0.12 2.94 6.43 -2.38 -0.02 2.92 16 4 N -0.73 -30.48 5.11 -328.00 -1.68 -32.16 16 5 C 0.40 19.48 7.63 133.42 1.02 20.50 16 6 C -0.36 -15.21 8.84 22.73 0.20 -15.01 16 7 C -0.03 -1.19 10.15 22.39 0.23 -0.96 16 8 C -0.34 -17.46 9.83 22.87 0.22 -17.23 16 9 C 0.26 15.02 6.55 40.18 0.26 15.28 16 10 C -0.47 -26.90 9.14 23.46 0.21 -26.68 16 11 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 12 C 0.02 1.25 5.50 85.29 0.47 1.71 16 13 N -0.75 -43.27 11.46 21.84 0.25 -43.02 16 14 Si 0.99 40.33 29.56 68.60 2.03 42.36 16 15 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 16 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 18 N -0.57 -33.25 7.89 -186.59 -1.47 -34.72 16 19 C 0.51 14.19 7.22 87.66 0.63 14.82 16 20 O -0.58 -22.38 15.84 -3.02 -0.05 -22.43 16 21 N -0.70 -11.21 5.45 -463.07 -2.52 -13.73 16 22 C 0.09 1.37 6.13 86.38 0.53 1.90 16 23 C 0.06 0.53 7.67 71.98 0.55 1.08 16 24 F -0.23 -3.66 17.36 44.97 0.78 -2.88 16 25 H 0.06 1.63 7.65 -2.39 -0.02 1.61 16 26 H 0.11 1.21 7.56 -2.39 -0.02 1.19 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.39 18.60 7.91 -92.71 -0.73 17.87 16 29 H 0.13 4.36 6.04 -2.91 -0.02 4.34 16 30 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 31 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.27 14.34 8.29 -92.71 -0.77 13.57 16 33 H 0.42 2.92 7.89 -92.71 -0.73 2.19 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -78.47 321.04 2.11 -76.36 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.35 Total: 33.30 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.12 Total: -3.08 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -5.42 Total: -123.63 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -78.47 2.11 -76.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116929085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.346 kcal (2) G-P(sol) polarization free energy of solvation -78.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds