Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35501 * 117.00025 * 2 1 4 4 N 1.32254 * 119.13360 * 359.97438 * 3 2 1 5 5 C 1.32577 * 120.96345 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.23996 * 359.97438 * 5 4 3 7 7 F 1.35098 * 120.79076 * 180.02562 * 6 5 4 8 8 C 1.39787 * 118.41684 * 0.02562 * 6 5 4 9 9 N 1.38664 * 120.50427 * 180.02562 * 8 6 5 10 10 C 1.46852 * 110.99834 * 304.20677 * 9 8 6 11 11 C 1.53038 * 109.51991 * 174.16381 * 10 9 8 12 12 C 1.53121 * 109.28145 * 59.17795 * 11 10 9 13 13 C 1.53116 * 109.15919 * 302.34666 * 12 11 10 14 14 H 1.09002 * 109.50351 * 297.71191 * 13 12 11 15 15 C 1.50700 * 109.53480 * 177.61205 * 13 12 11 16 16 H 1.07992 * 120.00329 * 240.09746 * 15 13 12 17 17 C 1.37881 * 119.99818 * 60.09632 * 15 13 12 18 18 N 1.31518 * 119.99934 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00022 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46951 * 60.00080 * 19 17 15 21 21 H 1.48497 * 109.47255 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47130 * 299.99920 * 19 17 15 23 23 C 1.46851 * 110.99873 * 179.97438 * 9 8 6 24 24 N 1.32272 * 119.13173 * 180.25675 * 3 2 1 25 25 H 1.08990 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46979 * 300.00517 * 1 2 3 27 27 H 1.08995 * 109.46769 * 59.99875 * 1 2 3 28 28 H 1.08003 * 120.37730 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.46331 * 294.17724 * 10 9 8 30 30 H 1.09000 * 109.45938 * 54.14712 * 10 9 8 31 31 H 1.09004 * 109.50259 * 179.12052 * 11 10 9 32 32 H 1.09005 * 109.50470 * 299.23445 * 11 10 9 33 33 H 1.08997 * 109.52457 * 182.43793 * 12 11 10 34 34 H 1.09000 * 109.52188 * 62.25069 * 12 11 10 35 35 H 0.97001 * 119.99543 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.46045 * 65.82429 * 23 9 8 37 37 H 1.08995 * 109.46195 * 305.85749 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3072 2.3055 -0.0005 5 6 1.8711 3.5054 0.0000 6 6 3.2500 3.6035 0.0016 7 9 3.8575 4.8102 0.0026 8 6 4.0008 2.4243 0.0021 9 7 5.3866 2.4723 0.0042 10 6 5.8876 3.2614 -1.1284 11 6 7.4059 3.4146 -1.0131 12 6 8.0549 2.0277 -1.0064 13 6 7.4804 1.2097 0.1535 14 1 7.7255 1.6955 1.0979 15 6 8.0702 -0.1770 0.1329 16 1 7.4254 -1.0365 0.0256 17 6 9.4332 -0.3481 0.2510 18 7 10.2185 0.6987 0.3821 19 14 10.1645 -2.0669 0.2248 20 1 9.8302 -2.7274 -1.0625 21 1 11.6399 -1.9794 0.3683 22 1 9.6046 -2.8602 1.3483 23 6 5.9599 1.1203 0.0050 24 7 3.3660 1.2565 -0.0052 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.2601 4.3960 -0.0009 29 1 5.6437 2.7532 -2.0613 30 1 5.4214 4.2466 -1.1191 31 1 7.7794 3.9870 -1.8622 32 1 7.6499 3.9351 -0.0870 33 1 9.1328 2.1305 -0.8809 34 1 7.8436 1.5221 -1.9486 35 1 11.1774 0.5782 0.4656 36 1 5.7157 0.6218 -0.9330 37 1 5.5462 0.5509 0.8372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = -15.416162 kcal Electronic energy + Delta-G solvation = -22382.473099 eV Core-core repulsion = 18882.562657 eV Total energy + Delta-G solvation = -3499.910442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.87299 -41.24450 -39.04848 -37.76901 -34.53871 -33.08219 -31.69511 -30.24287 -29.74185 -27.56484 -25.33859 -24.87339 -23.59143 -22.20174 -21.54746 -19.05299 -18.64052 -18.23587 -17.41020 -16.60723 -16.57936 -15.69597 -15.52687 -15.26381 -14.57331 -14.34299 -14.14312 -14.01046 -13.60008 -13.11225 -12.93039 -12.59843 -12.41757 -12.14931 -11.88628 -11.76258 -11.32387 -11.03802 -10.90584 -10.77483 -10.72308 -10.22838 -9.93704 -9.60449 -9.30565 -9.19808 -9.09486 -8.75499 -8.34325 -8.07216 -6.00496 -4.06422 0.86561 0.94504 2.44512 3.33328 3.37478 3.40340 3.51599 3.66129 3.94038 4.10817 4.44561 4.69254 4.81191 5.05076 5.12286 5.17976 5.29866 5.41194 5.45912 5.49458 5.77402 5.85959 6.09246 6.32109 6.34988 6.48108 6.53357 6.61591 6.83205 6.93352 7.07611 7.18586 7.27466 7.48784 7.72262 7.97013 8.03545 8.11015 8.41049 8.96587 9.58160 11.05913 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.005111 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.448641 B = 5476.798035 C = 6717.975014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.286 6.286 3 C 0.516 3.484 4 N -0.578 5.578 5 C 0.172 3.828 6 C -0.070 4.070 7 F -0.118 7.118 8 C 0.385 3.615 9 N -0.460 5.460 10 C 0.056 3.944 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.051 3.949 14 H 0.036 0.964 15 C -0.514 4.514 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.074 3.926 24 N -0.536 5.536 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.180 0.820 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.046 0.954 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.266 5.969 -2.674 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.187 6.187 3 C 0.212 3.788 4 N -0.310 5.310 5 C 0.009 3.991 6 C -0.099 4.099 7 F -0.097 7.097 8 C 0.141 3.859 9 N -0.175 5.175 10 C -0.069 4.069 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.032 3.968 14 H 0.054 0.946 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.051 4.051 24 N -0.268 5.268 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.197 0.803 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.194 5.077 -2.249 17.119 hybrid contribution 0.478 -0.172 -0.441 0.672 sum -15.716 4.904 -2.690 16.682 Atomic orbital electron populations 1.22982 0.75816 1.03450 1.02765 1.86135 1.23186 1.22454 1.86943 1.20487 0.85485 0.84718 0.88091 1.68086 1.40303 0.98114 1.24523 1.22757 0.90164 0.95553 0.90619 1.18660 0.92526 0.81618 1.17086 1.91455 1.82878 1.40737 1.94614 1.20299 0.91724 0.86262 0.87639 1.58938 0.98834 1.19925 1.39764 1.22448 0.98610 0.97100 0.88704 1.21733 0.91518 1.00788 1.01491 1.21744 1.03488 0.91452 0.98660 1.18773 0.86503 0.96034 0.95446 0.94630 1.21036 0.92022 0.91833 1.50368 0.92519 1.24919 0.97118 0.96750 0.94937 1.69871 1.04234 1.28835 1.49848 0.86639 0.77847 0.84768 0.78646 1.20292 1.21318 1.20238 1.22472 0.98234 0.82843 1.01536 1.67687 1.07975 1.27667 1.23458 0.87955 0.91904 0.91930 0.80298 0.93637 0.89857 0.92215 0.91496 0.88510 0.94617 0.92925 0.93586 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 10.36 101.05 1.05 1.48 16 2 O -0.29 -4.21 10.56 -18.20 -0.19 -4.41 16 3 C 0.52 8.32 8.49 -91.35 -0.78 7.55 16 4 N -0.58 -7.95 9.22 -14.78 -0.14 -8.09 16 5 C 0.17 2.11 11.28 -17.23 -0.19 1.92 16 6 C -0.07 -1.04 7.01 -39.00 -0.27 -1.31 16 7 F -0.12 -1.70 14.91 2.25 0.03 -1.66 16 8 C 0.38 6.86 6.42 -154.66 -0.99 5.86 16 9 N -0.46 -8.90 4.64 -172.99 -0.80 -9.70 16 10 C 0.06 0.97 5.18 -3.83 -0.02 0.95 16 11 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 12 C -0.12 -2.63 5.03 -26.61 -0.13 -2.77 16 13 C 0.05 1.27 2.26 -91.70 -0.21 1.06 16 14 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -24.95 11.36 55.43 0.63 -24.32 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.07 1.62 3.89 -3.84 -0.01 1.61 16 24 N -0.54 -9.92 8.87 -13.90 -0.12 -10.04 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.29 5.62 -51.93 -0.29 0.99 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 2.46 6.16 -51.93 -0.32 2.14 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 37 H 0.08 1.78 7.73 -51.93 -0.40 1.38 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -29.62 307.07 -7.88 -37.50 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.78 Total: -1.47 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.12 Total: 1.37 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.43 Total: -52.16 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.19 Total: -4.41 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.62 -7.88 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.083 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds