Wall clock time and date at job start Tue Mar 31 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35501 * 117.00025 * 2 1 4 4 N 1.32254 * 119.13360 * 359.97438 * 3 2 1 5 5 C 1.32577 * 120.96345 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.23996 * 359.97438 * 5 4 3 7 7 F 1.35098 * 120.79076 * 180.02562 * 6 5 4 8 8 C 1.39787 * 118.41684 * 0.02562 * 6 5 4 9 9 N 1.38664 * 120.50427 * 180.02562 * 8 6 5 10 10 C 1.46852 * 110.99834 * 304.20677 * 9 8 6 11 11 C 1.53038 * 109.51991 * 174.16381 * 10 9 8 12 12 C 1.53121 * 109.28145 * 59.17795 * 11 10 9 13 13 C 1.53116 * 109.15919 * 302.34666 * 12 11 10 14 14 H 1.09002 * 109.50351 * 297.71191 * 13 12 11 15 15 C 1.50700 * 109.53480 * 177.61205 * 13 12 11 16 16 H 1.07992 * 120.00329 * 240.09746 * 15 13 12 17 17 C 1.37881 * 119.99818 * 60.09632 * 15 13 12 18 18 N 1.31518 * 119.99934 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00022 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46951 * 60.00080 * 19 17 15 21 21 H 1.48497 * 109.47255 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47130 * 299.99920 * 19 17 15 23 23 C 1.46851 * 110.99873 * 179.97438 * 9 8 6 24 24 N 1.32272 * 119.13173 * 180.25675 * 3 2 1 25 25 H 1.08990 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46979 * 300.00517 * 1 2 3 27 27 H 1.08995 * 109.46769 * 59.99875 * 1 2 3 28 28 H 1.08003 * 120.37730 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.46331 * 294.17724 * 10 9 8 30 30 H 1.09000 * 109.45938 * 54.14712 * 10 9 8 31 31 H 1.09004 * 109.50259 * 179.12052 * 11 10 9 32 32 H 1.09005 * 109.50470 * 299.23445 * 11 10 9 33 33 H 1.08997 * 109.52457 * 182.43793 * 12 11 10 34 34 H 1.09000 * 109.52188 * 62.25069 * 12 11 10 35 35 H 0.97001 * 119.99543 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.46045 * 65.82429 * 23 9 8 37 37 H 1.08995 * 109.46195 * 305.85749 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3072 2.3055 -0.0005 5 6 1.8711 3.5054 0.0000 6 6 3.2500 3.6035 0.0016 7 9 3.8575 4.8102 0.0026 8 6 4.0008 2.4243 0.0021 9 7 5.3866 2.4723 0.0042 10 6 5.8876 3.2614 -1.1284 11 6 7.4059 3.4146 -1.0131 12 6 8.0549 2.0277 -1.0064 13 6 7.4804 1.2097 0.1535 14 1 7.7255 1.6955 1.0979 15 6 8.0702 -0.1770 0.1329 16 1 7.4254 -1.0365 0.0256 17 6 9.4332 -0.3481 0.2510 18 7 10.2185 0.6987 0.3821 19 14 10.1645 -2.0669 0.2248 20 1 9.8302 -2.7274 -1.0625 21 1 11.6399 -1.9794 0.3683 22 1 9.6046 -2.8602 1.3483 23 6 5.9599 1.1203 0.0050 24 7 3.3660 1.2565 -0.0052 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.2601 4.3960 -0.0009 29 1 5.6437 2.7532 -2.0613 30 1 5.4214 4.2466 -1.1191 31 1 7.7794 3.9870 -1.8622 32 1 7.6499 3.9351 -0.0870 33 1 9.1328 2.1305 -0.8809 34 1 7.8436 1.5221 -1.9486 35 1 11.1774 0.5782 0.4656 36 1 5.7157 0.6218 -0.9330 37 1 5.5462 0.5509 0.8372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:54 Heat of formation + Delta-G solvation = -36.233947 kcal Electronic energy + Delta-G solvation = -22383.375826 eV Core-core repulsion = 18882.562657 eV Total energy + Delta-G solvation = -3500.813169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.00330 -42.44752 -40.41105 -39.00686 -36.14514 -34.67402 -33.25632 -31.93572 -31.11138 -28.41901 -27.17362 -26.33764 -24.90717 -23.63727 -23.16125 -20.69272 -19.84216 -19.54811 -18.65068 -18.34956 -17.70595 -17.25093 -16.64735 -16.56483 -16.23332 -15.84696 -15.46861 -15.12231 -15.02050 -14.58126 -14.38598 -14.32111 -13.99149 -13.52871 -13.01994 -12.88975 -12.85682 -12.70178 -12.59259 -12.30485 -12.19603 -11.92098 -11.84596 -11.46075 -11.08504 -10.81378 -10.46186 -10.35354 -10.33606 -9.41500 -8.10562 -6.24245 -0.33095 -0.18893 1.39189 1.42181 1.43276 1.51078 2.23833 2.41636 2.48154 2.88516 2.91743 3.16990 3.52350 3.70115 3.89097 4.03837 4.20690 4.25290 4.42246 4.42386 4.45038 4.52948 4.71759 4.73726 4.82840 4.93838 4.95931 5.04431 5.12054 5.34591 5.48478 5.60956 5.66482 5.90325 5.95559 6.01956 6.11213 6.35247 6.83984 6.88698 7.43372 8.94352 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.005111 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.448641 B = 5476.798035 C = 6717.975014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.308 6.308 3 C 0.508 3.492 4 N -0.564 5.564 5 C 0.196 3.804 6 C -0.070 4.070 7 F -0.114 7.114 8 C 0.362 3.638 9 N -0.474 5.474 10 C 0.060 3.940 11 C -0.108 4.108 12 C -0.107 4.107 13 C 0.051 3.949 14 H 0.001 0.999 15 C -0.538 4.538 16 H 0.048 0.952 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.274 1.274 23 C 0.099 3.901 24 N -0.574 5.574 25 H 0.129 0.871 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.232 0.768 29 H 0.047 0.953 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.368 6.954 -3.299 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.209 6.209 3 C 0.204 3.796 4 N -0.296 5.296 5 C 0.032 3.968 6 C -0.098 4.098 7 F -0.093 7.093 8 C 0.119 3.881 9 N -0.189 5.189 10 C -0.064 4.064 11 C -0.146 4.146 12 C -0.146 4.146 13 C 0.032 3.968 14 H 0.019 0.981 15 C -0.577 4.577 16 H 0.067 0.933 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.200 1.200 23 C -0.027 4.027 24 N -0.307 5.307 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.249 0.751 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.327 6.059 -2.877 19.515 hybrid contribution 0.977 -0.475 -0.229 1.110 sum -17.349 5.584 -3.106 18.489 Atomic orbital electron populations 1.23335 0.73164 1.05553 1.03464 1.86123 1.25836 1.22292 1.86649 1.20656 0.85058 0.85788 0.88094 1.68255 1.39493 0.98069 1.23733 1.23574 0.89431 0.96457 0.87309 1.18671 0.93203 0.80673 1.17247 1.91463 1.82995 1.40185 1.94608 1.20361 0.90982 0.87496 0.89218 1.58941 1.00408 1.18203 1.41368 1.22479 0.97535 0.98108 0.88295 1.21629 0.92401 0.98071 1.02514 1.21528 1.01896 0.93884 0.97253 1.18674 0.88606 0.94994 0.94537 0.98119 1.21363 0.92593 0.92865 1.50876 0.93335 1.25650 0.97412 1.00396 0.94498 1.70000 1.04382 1.30563 1.50121 0.85676 0.77235 0.80385 0.78745 1.19669 1.20557 1.19982 1.21911 0.96214 0.84661 0.99928 1.67531 1.09730 1.28722 1.24759 0.85304 0.91213 0.91064 0.75147 0.93448 0.87220 0.89123 0.92181 0.91372 0.95215 0.92844 0.94778 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.36 113.37 1.17 1.83 16 2 O -0.31 -8.78 10.56 -88.03 -0.93 -9.71 16 3 C 0.51 15.81 8.49 180.60 1.53 17.35 16 4 N -0.56 -13.89 9.22 -313.62 -2.89 -16.78 16 5 C 0.20 4.04 11.28 84.58 0.95 5.00 16 6 C -0.07 -1.89 7.01 22.64 0.16 -1.73 16 7 F -0.11 -2.92 14.91 44.97 0.67 -2.25 16 8 C 0.36 12.70 6.42 133.18 0.85 13.55 16 9 N -0.47 -18.50 4.64 -701.20 -3.26 -21.76 16 10 C 0.06 2.03 5.18 86.32 0.45 2.48 16 11 C -0.11 -3.98 6.09 30.65 0.19 -3.79 16 12 C -0.11 -5.05 5.03 30.67 0.15 -4.90 16 13 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 14 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 15 C -0.54 -30.56 8.56 25.60 0.22 -30.34 16 16 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 17 C 0.02 1.11 5.30 84.66 0.45 1.56 16 18 N -0.91 -52.59 11.36 21.45 0.24 -52.35 16 19 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.10 4.54 3.89 86.32 0.34 4.88 16 24 N -0.57 -21.34 8.87 -310.85 -2.76 -24.10 16 25 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 27 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 28 H 0.23 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.11 3.13 5.62 -2.39 -0.01 3.12 16 31 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.07 3.60 6.16 -2.39 -0.01 3.58 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.03 1.61 8.12 -2.39 -0.02 1.59 16 37 H 0.06 2.80 7.73 -2.39 -0.02 2.78 16 Total: -1.00 -66.97 307.07 0.63 -66.35 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.08 Total: 5.87 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.44 Total: 8.49 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -8.66 Total: -114.99 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.93 Total: -9.71 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.67 Total: -2.25 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -66.97 0.63 -66.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.111 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds