Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36990 * 120.00179 * 2 1 4 4 H 1.08003 * 120.00138 * 202.49535 * 3 2 1 5 5 C 1.38836 * 119.99629 * 22.49387 * 3 2 1 6 6 N 1.31541 * 120.00042 * 11.07726 * 5 3 2 7 7 Si 1.86800 * 119.99913 * 191.08020 * 5 3 2 8 8 H 1.48499 * 109.47012 * 89.99970 * 7 5 3 9 9 H 1.48494 * 109.47335 * 210.00282 * 7 5 3 10 10 H 1.48501 * 109.46986 * 330.00247 * 7 5 3 11 11 C 1.38451 * 120.00354 * 180.02562 * 2 1 3 12 12 N 1.32571 * 119.10153 * 179.97438 * 11 2 1 13 13 C 1.32468 * 121.13380 * 180.44631 * 12 11 2 14 14 C 1.38186 * 118.88988 * 0.02562 * 13 12 11 15 15 C 1.39574 * 118.64944 * 359.24092 * 14 13 12 16 16 N 1.32584 * 119.09294 * 0.02562 * 11 2 1 17 17 C 1.48025 * 119.19266 * 181.28495 * 15 14 13 18 18 C 1.39062 * 121.03629 * 195.18476 * 17 15 14 19 19 C 1.38074 * 119.80641 * 179.33514 * 18 17 15 20 20 C 1.38351 * 120.03802 * 0.03904 * 19 18 17 21 21 C 1.38309 * 120.35798 * 0.54674 * 20 19 18 22 22 C 1.38039 * 120.12504 * 359.97438 * 21 20 19 23 23 C 1.50496 * 120.19880 * 177.51451 * 22 21 20 24 24 C 1.50256 * 121.10979 * 178.04455 * 14 13 12 25 25 H 1.09008 * 109.46630 * 273.89503 * 1 2 3 26 26 H 1.08998 * 109.47350 * 33.89663 * 1 2 3 27 27 H 1.08997 * 109.47030 * 153.89833 * 1 2 3 28 28 H 0.97004 * 119.99593 * 179.97438 * 6 5 3 29 29 H 1.07995 * 120.55704 * 180.02562 * 13 12 11 30 30 H 1.08000 * 120.09603 * 359.61298 * 18 17 15 31 31 H 1.08006 * 119.97672 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.82276 * 180.56052 * 20 19 18 33 33 H 1.08002 * 119.93752 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.19317 * 265.74339 * 23 22 21 35 35 H 1.09004 * 109.19787 * 25.02388 * 23 22 21 36 36 H 1.08994 * 109.24543 * 265.69484 * 24 14 13 37 37 H 1.09001 * 109.23848 * 25.13740 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.1683 1.2219 -0.3579 5 6 1.5349 2.3429 0.4600 6 7 0.3848 2.2687 1.0940 7 14 2.3408 4.0045 0.1786 8 1 1.8749 4.5680 -1.1140 9 1 1.9720 4.9269 1.2823 10 1 3.8162 3.8395 0.1436 11 6 2.1573 -1.1990 -0.0005 12 7 3.4828 -1.1781 -0.0010 13 6 4.1855 -2.3010 -0.0104 14 6 3.5140 -3.5087 -0.0203 15 6 2.1184 -3.4985 -0.0038 16 7 1.4763 -2.3366 -0.0016 17 6 1.3872 -4.7855 0.0149 18 6 0.0295 -4.8430 -0.2807 19 6 -0.6244 -6.0590 -0.2692 20 6 0.0700 -7.2160 0.0365 21 6 1.4177 -7.1620 0.3429 22 6 2.0797 -5.9508 0.3451 23 6 3.5324 -5.8828 0.7325 24 6 4.2604 -4.8116 -0.0750 25 1 -0.3633 0.0698 1.0254 26 1 -0.3634 0.8530 -0.5731 27 1 -0.3633 -0.9228 -0.4521 28 1 -0.0447 3.0768 1.4157 29 1 5.2651 -2.2732 -0.0103 30 1 -0.5108 -3.9398 -0.5229 31 1 -1.6787 -6.1070 -0.4987 32 1 -0.4429 -8.1664 0.0356 33 1 1.9530 -8.0693 0.5809 34 1 3.6095 -5.6462 1.7937 35 1 3.9985 -6.8505 0.5470 36 1 4.3412 -5.1361 -1.1124 37 1 5.2600 -4.6704 0.3360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = 85.623739 kcal Electronic energy + Delta-G solvation = -21154.404591 eV Core-core repulsion = 18089.644792 eV Total energy + Delta-G solvation = -3064.759798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35751 -38.78364 -36.31272 -34.62038 -33.05389 -32.06543 -30.68684 -29.82498 -28.23762 -26.60208 -24.68206 -23.87774 -22.86058 -21.71024 -21.27126 -19.52117 -17.73954 -16.82271 -16.32924 -15.75075 -15.19018 -14.96715 -14.49829 -14.22686 -14.09655 -13.66462 -13.28132 -13.20377 -12.77181 -12.70671 -12.52969 -12.10604 -12.01031 -11.55726 -11.34732 -11.22126 -10.93815 -10.83791 -10.67199 -10.46345 -10.41541 -10.04539 -9.64825 -9.46879 -8.88236 -8.59368 -8.16325 -7.90322 -7.05185 -6.45799 -3.86227 1.09126 1.56994 2.23918 2.55351 3.14203 3.16494 3.21707 3.91164 3.99309 4.42642 4.74158 4.82986 4.85098 5.01138 5.17519 5.24420 5.30054 5.39344 5.43932 5.58745 5.65460 5.81208 5.91548 6.04480 6.10236 6.15141 6.24732 6.30236 6.39665 6.60669 6.62655 6.66529 6.73252 6.89579 6.97235 7.17899 7.23510 7.32978 7.44625 7.87361 8.24759 8.44343 9.04652 9.25185 9.78131 10.53113 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.004615 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.106693 B = 6065.778556 C = 6943.696652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.391 5.391 3 C -0.286 4.286 4 H 0.110 0.890 5 C 0.026 3.974 6 N -0.871 5.871 7 Si 0.937 3.063 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.266 1.266 11 C 0.496 3.504 12 N -0.571 5.571 13 C 0.201 3.799 14 C -0.326 4.326 15 C 0.256 3.744 16 N -0.577 5.577 17 C -0.035 4.035 18 C -0.075 4.075 19 C -0.135 4.135 20 C -0.115 4.115 21 C -0.130 4.130 22 C -0.058 4.058 23 C -0.079 4.079 24 C -0.040 4.040 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.271 0.729 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -14.533 -1.755 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.082 5.082 3 C -0.416 4.416 4 H 0.127 0.873 5 C -0.180 4.180 6 N -0.506 5.506 7 Si 0.763 3.237 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.190 1.190 11 C 0.143 3.857 12 N -0.295 5.295 13 C 0.029 3.971 14 C -0.339 4.339 15 C 0.104 3.896 16 N -0.301 5.301 17 C -0.036 4.036 18 C -0.094 4.094 19 C -0.153 4.153 20 C -0.133 4.133 21 C -0.148 4.148 22 C -0.059 4.059 23 C -0.116 4.116 24 C -0.078 4.078 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.831 -13.006 -1.642 13.135 hybrid contribution 0.626 0.102 0.012 0.634 sum 1.457 -12.903 -1.630 13.087 Atomic orbital electron populations 1.21455 0.78585 0.99149 1.02124 1.42361 1.05130 1.00811 1.59850 1.19932 0.99867 0.82768 1.38992 0.87269 1.25512 0.96629 1.00535 0.95282 1.70107 1.16651 1.29783 1.34101 0.85746 0.79681 0.80304 0.77988 1.20164 1.20745 1.19041 1.19215 0.85219 0.85801 0.95422 1.67862 1.07159 1.30563 1.23873 1.22368 0.98895 0.86666 0.89197 1.20302 0.94604 0.96469 1.22541 1.19099 0.89647 0.90265 0.90576 1.67770 1.40002 0.97117 1.25260 1.18363 0.93154 0.90946 1.01093 1.21271 0.93429 0.98118 0.96595 1.21108 0.99879 0.92522 1.01782 1.21137 0.94449 0.98158 0.99574 1.20870 0.94680 0.96831 1.02385 1.19960 0.95998 0.92227 0.97721 1.20398 0.91077 0.99447 1.00647 1.19742 0.97440 0.91342 0.99294 0.92152 0.91681 0.93792 0.91843 0.83624 0.84945 0.86083 0.86361 0.86092 0.90600 0.90927 0.92368 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.20 8.72 59.84 0.52 3.72 16 2 N -0.39 -10.44 3.11 -124.42 -0.39 -10.83 16 3 C -0.29 -7.79 9.29 -15.03 -0.14 -7.93 16 4 H 0.11 3.00 7.31 -52.48 -0.38 2.62 16 5 C 0.03 0.67 5.13 -17.45 -0.09 0.58 16 6 N -0.87 -23.11 10.58 55.49 0.59 -22.52 16 7 Si 0.94 20.19 29.57 -169.99 -5.03 15.16 16 8 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 11 C 0.50 12.74 8.13 -322.53 -2.62 10.12 16 12 N -0.57 -13.93 9.20 -13.95 -0.13 -14.06 16 13 C 0.20 4.01 11.00 -17.30 -0.19 3.82 16 14 C -0.33 -6.09 5.67 -104.36 -0.59 -6.68 16 15 C 0.26 5.30 6.65 -82.96 -0.55 4.75 16 16 N -0.58 -13.63 8.50 -10.59 -0.09 -13.72 16 17 C -0.03 -0.61 5.80 -105.10 -0.61 -1.22 16 18 C -0.07 -1.22 9.63 -39.34 -0.38 -1.60 16 19 C -0.13 -1.77 10.04 -39.60 -0.40 -2.16 16 20 C -0.11 -1.34 10.03 -39.51 -0.40 -1.74 16 21 C -0.13 -1.58 9.67 -39.63 -0.38 -1.96 16 22 C -0.06 -0.84 5.67 -104.32 -0.59 -1.43 16 23 C -0.08 -0.99 5.86 -28.17 -0.17 -1.16 16 24 C -0.04 -0.55 5.90 -28.29 -0.17 -0.72 16 25 H 0.06 1.55 7.44 -51.92 -0.39 1.17 16 26 H 0.06 1.61 7.17 -51.93 -0.37 1.23 16 27 H 0.04 1.00 7.20 -51.93 -0.37 0.62 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.15 2.32 8.06 -52.49 -0.42 1.89 16 30 H 0.13 2.26 7.77 -52.49 -0.41 1.85 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -30.10 309.33 -11.57 -41.67 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.43 Total: 3.23 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -6.75 Total: -3.61 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.02 Total: -61.12 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.10 -11.57 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.298 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds