Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36990 * 120.00179 * 2 1 4 4 H 1.08003 * 120.00138 * 202.49535 * 3 2 1 5 5 C 1.38836 * 119.99629 * 22.49387 * 3 2 1 6 6 N 1.31541 * 120.00042 * 11.07726 * 5 3 2 7 7 Si 1.86800 * 119.99913 * 191.08020 * 5 3 2 8 8 H 1.48499 * 109.47012 * 89.99970 * 7 5 3 9 9 H 1.48494 * 109.47335 * 210.00282 * 7 5 3 10 10 H 1.48501 * 109.46986 * 330.00247 * 7 5 3 11 11 C 1.38451 * 120.00354 * 180.02562 * 2 1 3 12 12 N 1.32571 * 119.10153 * 179.97438 * 11 2 1 13 13 C 1.32468 * 121.13380 * 180.44631 * 12 11 2 14 14 C 1.38186 * 118.88988 * 0.02562 * 13 12 11 15 15 C 1.39574 * 118.64944 * 359.24092 * 14 13 12 16 16 N 1.32584 * 119.09294 * 0.02562 * 11 2 1 17 17 C 1.48025 * 119.19266 * 181.28495 * 15 14 13 18 18 C 1.39062 * 121.03629 * 195.18476 * 17 15 14 19 19 C 1.38074 * 119.80641 * 179.33514 * 18 17 15 20 20 C 1.38351 * 120.03802 * 0.03904 * 19 18 17 21 21 C 1.38309 * 120.35798 * 0.54674 * 20 19 18 22 22 C 1.38039 * 120.12504 * 359.97438 * 21 20 19 23 23 C 1.50496 * 120.19880 * 177.51451 * 22 21 20 24 24 C 1.50256 * 121.10979 * 178.04455 * 14 13 12 25 25 H 1.09008 * 109.46630 * 273.89503 * 1 2 3 26 26 H 1.08998 * 109.47350 * 33.89663 * 1 2 3 27 27 H 1.08997 * 109.47030 * 153.89833 * 1 2 3 28 28 H 0.97004 * 119.99593 * 179.97438 * 6 5 3 29 29 H 1.07995 * 120.55704 * 180.02562 * 13 12 11 30 30 H 1.08000 * 120.09603 * 359.61298 * 18 17 15 31 31 H 1.08006 * 119.97672 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.82276 * 180.56052 * 20 19 18 33 33 H 1.08002 * 119.93752 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.19317 * 265.74339 * 23 22 21 35 35 H 1.09004 * 109.19787 * 25.02388 * 23 22 21 36 36 H 1.08994 * 109.24543 * 265.69484 * 24 14 13 37 37 H 1.09001 * 109.23848 * 25.13740 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.1683 1.2219 -0.3579 5 6 1.5349 2.3429 0.4600 6 7 0.3848 2.2687 1.0940 7 14 2.3408 4.0045 0.1786 8 1 1.8749 4.5680 -1.1140 9 1 1.9720 4.9269 1.2823 10 1 3.8162 3.8395 0.1436 11 6 2.1573 -1.1990 -0.0005 12 7 3.4828 -1.1781 -0.0010 13 6 4.1855 -2.3010 -0.0104 14 6 3.5140 -3.5087 -0.0203 15 6 2.1184 -3.4985 -0.0038 16 7 1.4763 -2.3366 -0.0016 17 6 1.3872 -4.7855 0.0149 18 6 0.0295 -4.8430 -0.2807 19 6 -0.6244 -6.0590 -0.2692 20 6 0.0700 -7.2160 0.0365 21 6 1.4177 -7.1620 0.3429 22 6 2.0797 -5.9508 0.3451 23 6 3.5324 -5.8828 0.7325 24 6 4.2604 -4.8116 -0.0750 25 1 -0.3633 0.0698 1.0254 26 1 -0.3634 0.8530 -0.5731 27 1 -0.3633 -0.9228 -0.4521 28 1 -0.0447 3.0768 1.4157 29 1 5.2651 -2.2732 -0.0103 30 1 -0.5108 -3.9398 -0.5229 31 1 -1.6787 -6.1070 -0.4987 32 1 -0.4429 -8.1664 0.0356 33 1 1.9530 -8.0693 0.5809 34 1 3.6095 -5.6462 1.7937 35 1 3.9985 -6.8505 0.5470 36 1 4.3412 -5.1361 -1.1124 37 1 5.2600 -4.6704 0.3360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = 71.350004 kcal Electronic energy + Delta-G solvation = -21155.023546 eV Core-core repulsion = 18089.644792 eV Total energy + Delta-G solvation = -3065.378754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89290 -40.11037 -38.02566 -35.94247 -34.65798 -33.82765 -32.06745 -31.11026 -29.59629 -28.50590 -26.39077 -25.33430 -24.13924 -23.22544 -22.60461 -20.87427 -19.40544 -18.51743 -17.91883 -17.22032 -16.56149 -16.24886 -16.01141 -15.80105 -15.50681 -15.16759 -14.90804 -14.52992 -14.26249 -14.05180 -13.88430 -13.34933 -13.24281 -13.12167 -13.08849 -12.70279 -12.52492 -12.46266 -12.11291 -12.01457 -11.69896 -11.65018 -11.28819 -11.18497 -10.63249 -9.70550 -9.63358 -9.49470 -8.78622 -8.34918 -5.87115 -0.20398 0.50618 0.56371 1.10436 1.39324 1.45423 1.53645 2.15757 2.65413 2.76033 2.97281 3.34798 3.46494 3.76944 3.90023 4.03566 4.15631 4.22259 4.29894 4.32646 4.55782 4.59713 4.62801 4.71926 4.80501 4.89238 4.92803 5.02135 5.10701 5.19458 5.20941 5.32736 5.36406 5.41290 5.54361 5.61222 5.72759 5.75383 6.03480 6.13034 6.50969 6.55444 7.16594 7.39169 7.95036 8.64869 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.004615 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.106693 B = 6065.778556 C = 6943.696652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.427 5.427 3 C -0.314 4.314 4 H 0.095 0.905 5 C -0.016 4.016 6 N -0.905 5.905 7 Si 1.005 2.995 8 H -0.268 1.268 9 H -0.276 1.276 10 H -0.265 1.265 11 C 0.489 3.511 12 N -0.605 5.605 13 C 0.186 3.814 14 C -0.304 4.304 15 C 0.235 3.765 16 N -0.601 5.601 17 C -0.076 4.076 18 C -0.098 4.098 19 C -0.137 4.137 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.062 4.062 23 C -0.078 4.078 24 C -0.041 4.041 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.273 0.727 29 H 0.188 0.812 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -18.651 -1.777 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.124 5.124 3 C -0.443 4.443 4 H 0.113 0.887 5 C -0.217 4.217 6 N -0.542 5.542 7 Si 0.827 3.173 8 H -0.193 1.193 9 H -0.201 1.201 10 H -0.190 1.190 11 C 0.135 3.865 12 N -0.330 5.330 13 C 0.017 3.983 14 C -0.316 4.316 15 C 0.085 3.915 16 N -0.327 5.327 17 C -0.077 4.077 18 C -0.117 4.117 19 C -0.155 4.155 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.064 4.064 23 C -0.114 4.114 24 C -0.079 4.079 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.205 0.795 30 H 0.124 0.876 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.573 -17.236 -1.673 17.507 hybrid contribution 0.179 0.882 0.001 0.900 sum 2.752 -16.354 -1.672 16.668 Atomic orbital electron populations 1.21093 0.78570 0.98739 1.00366 1.42411 1.05280 1.01129 1.63535 1.19927 0.99775 0.83908 1.40697 0.88731 1.26351 0.97205 1.03500 0.94693 1.70211 1.17958 1.30521 1.35518 0.84755 0.78543 0.75872 0.78122 1.19296 1.20133 1.18953 1.19584 0.86020 0.86287 0.94575 1.67874 1.06975 1.33000 1.25183 1.23182 1.00730 0.86106 0.88268 1.21026 0.94258 0.98654 1.17656 1.19946 0.91324 0.90701 0.89508 1.67828 1.40739 0.97690 1.26399 1.18483 0.93917 0.90570 1.04718 1.21248 0.93470 0.98790 0.98215 1.21387 1.01087 0.91814 1.01212 1.21653 0.94543 0.98988 0.96657 1.21348 0.94963 0.97153 1.00524 1.20288 0.97137 0.91880 0.97091 1.20491 0.89838 1.00959 1.00133 1.19932 0.98342 0.88830 1.00842 0.94470 0.92793 0.93197 0.91753 0.79473 0.87612 0.83910 0.82349 0.82012 0.90693 0.86605 0.90999 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 8.32 8.72 127.77 1.11 9.44 16 2 N -0.43 -24.48 3.11 -547.55 -1.70 -26.19 16 3 C -0.31 -18.19 9.29 84.03 0.78 -17.41 16 4 H 0.09 5.54 7.31 -2.91 -0.02 5.52 16 5 C -0.02 -0.88 5.13 84.88 0.44 -0.45 16 6 N -0.90 -50.78 10.58 21.65 0.23 -50.56 16 7 Si 1.00 43.09 29.57 68.60 2.03 45.12 16 8 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 9 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 C 0.49 26.53 8.13 261.39 2.13 28.65 16 12 N -0.61 -30.58 9.20 -198.04 -1.82 -32.40 16 13 C 0.19 7.29 11.00 84.58 0.93 8.23 16 14 C -0.30 -10.97 5.67 -19.69 -0.11 -11.08 16 15 C 0.23 9.83 6.65 41.92 0.28 10.11 16 16 N -0.60 -29.94 8.50 -187.42 -1.59 -31.53 16 17 C -0.08 -2.62 5.80 -20.17 -0.12 -2.74 16 18 C -0.10 -3.22 9.63 22.43 0.22 -3.00 16 19 C -0.14 -3.29 10.04 22.26 0.22 -3.06 16 20 C -0.10 -1.86 10.03 22.31 0.22 -1.64 16 21 C -0.12 -2.32 9.67 22.24 0.22 -2.10 16 22 C -0.06 -1.60 5.67 -19.67 -0.11 -1.71 16 23 C -0.08 -1.58 5.86 29.66 0.17 -1.41 16 24 C -0.04 -0.98 5.90 29.59 0.17 -0.80 16 25 H 0.04 2.08 7.44 -2.38 -0.02 2.06 16 26 H 0.05 2.89 7.17 -2.39 -0.02 2.87 16 27 H 0.05 2.48 7.20 -2.39 -0.02 2.46 16 28 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.19 5.51 8.06 -2.91 -0.02 5.48 16 30 H 0.11 3.91 7.77 -2.91 -0.02 3.89 16 31 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 1.44 8.04 -2.38 -0.02 1.43 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -72.48 309.33 4.77 -67.70 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.08 Total: 16.83 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.55 Total: 11.02 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -4.89 Total: -140.67 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -72.48 4.77 -67.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.053 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds