Wall clock time and date at job start Tue Mar 31 2020 05:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 C 1.53005 * 109.46930 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46881 * 179.97438 * 4 3 2 6 6 C 1.36884 * 119.99926 * 85.06066 * 5 4 3 7 7 H 1.07999 * 119.99481 * 5.28121 * 6 5 4 8 8 C 1.38854 * 119.99802 * 185.28832 * 6 5 4 9 9 N 1.31516 * 120.00153 * 352.78630 * 8 6 5 10 10 Si 1.86809 * 119.99807 * 172.79331 * 8 6 5 11 11 H 1.48498 * 109.47015 * 59.99763 * 10 8 6 12 12 H 1.48498 * 109.46775 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46838 * 299.99886 * 10 8 6 14 14 C 1.38288 * 120.00014 * 265.05177 * 5 4 3 15 15 N 1.32466 * 119.79776 * 90.26912 * 14 5 4 16 16 C 1.31787 * 121.79986 * 179.71077 * 15 14 5 17 17 C 1.38664 * 121.18776 * 0.56249 * 16 15 14 18 18 F 1.35102 * 120.26606 * 179.74344 * 17 16 15 19 19 C 1.38535 * 119.46155 * 359.72494 * 17 16 15 20 20 C 1.39968 * 118.34809 * 0.02562 * 19 17 16 21 21 C 1.47453 * 120.59958 * 179.97438 * 20 19 17 22 22 N 1.34774 * 119.99863 * 5.51264 * 21 20 19 23 23 O 1.21600 * 119.99701 * 185.50457 * 21 20 19 24 24 H 1.09007 * 109.47068 * 300.00122 * 1 2 3 25 25 H 1.09002 * 109.47277 * 59.99548 * 1 2 3 26 26 H 1.08994 * 109.46993 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46927 * 240.00083 * 2 1 3 28 28 H 1.09001 * 109.46994 * 119.99987 * 2 1 3 29 29 H 1.08998 * 109.47248 * 60.00280 * 3 2 1 30 30 H 1.09001 * 109.47272 * 299.99818 * 3 2 1 31 31 H 1.09001 * 109.46994 * 299.99987 * 4 3 2 32 32 H 1.08998 * 109.46927 * 60.00083 * 4 3 2 33 33 H 0.97005 * 119.99921 * 180.02562 * 9 8 6 34 34 H 1.08000 * 119.40105 * 180.26576 * 16 15 14 35 35 H 1.08005 * 120.82320 * 180.02562 * 19 17 16 36 36 H 0.97005 * 120.00131 * 359.97438 * 22 21 20 37 37 H 0.97007 * 119.99949 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1897 3.5038 1.1807 7 1 4.0155 2.9965 2.1182 8 6 4.5467 4.8456 1.1731 9 7 4.8964 5.4266 0.0462 10 14 4.5305 5.8255 2.7634 11 1 5.4707 5.2096 3.7339 12 1 4.9495 7.2232 2.4878 13 1 3.1590 5.8224 3.3327 14 6 4.3867 3.4405 -1.1934 15 7 3.4646 4.1203 -1.8586 16 6 3.7356 4.7278 -2.9962 17 6 5.0030 4.6721 -3.5559 18 9 5.2589 5.2977 -4.7257 19 6 6.0048 3.9702 -2.9056 20 6 5.6953 3.3372 -1.6962 21 6 6.7234 2.5763 -0.9627 22 7 7.9996 2.5771 -1.3959 23 8 6.4198 1.9481 0.0333 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9286 -0.8891 33 1 5.1461 6.3639 0.0410 34 1 2.9551 5.2750 -3.5041 35 1 6.9999 3.9128 -3.3216 36 1 8.2417 3.0781 -2.1906 37 1 8.6759 2.0762 -0.9136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:01 Heat of formation + Delta-G solvation = -23.045582 kcal Electronic energy + Delta-G solvation = -22946.327384 eV Core-core repulsion = 19446.086105 eV Total energy + Delta-G solvation = -3500.241279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.14542 -39.57361 -37.64225 -36.14370 -34.08506 -33.05993 -31.36829 -31.13842 -29.30916 -27.54475 -24.52577 -23.97204 -22.90145 -20.98763 -20.39950 -19.99406 -17.99952 -17.44179 -16.77096 -15.59474 -15.44069 -15.07550 -14.90222 -14.82877 -14.60044 -13.78273 -13.59463 -13.48062 -13.36882 -13.17365 -12.62589 -12.22577 -12.02826 -11.83130 -11.64180 -11.23375 -11.07638 -10.77982 -10.65382 -10.50449 -10.32905 -9.96795 -9.80447 -9.28425 -9.14798 -8.96229 -8.85696 -8.44769 -7.74653 -7.12590 -5.85651 -3.29935 1.68255 2.13599 3.36730 3.39929 3.41057 3.85720 4.20462 4.36138 4.80882 4.94114 5.00493 5.32970 5.41450 5.42236 5.44809 5.59039 5.62133 5.78895 5.97769 6.18035 6.20290 6.26805 6.33022 6.35874 6.49947 6.57049 6.59415 6.62020 6.86644 6.97100 7.19044 7.38759 7.47660 7.62364 7.99665 8.16546 9.01411 9.11059 9.22310 9.68452 10.05523 11.15273 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.008542 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.087572 B = 3277.062238 C = 4103.407060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.169 3.831 5 N -0.538 5.538 6 C -0.210 4.210 7 H 0.088 0.912 8 C -0.016 4.016 9 N -0.908 5.908 10 Si 0.925 3.075 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.545 3.455 15 N -0.470 5.470 16 C 0.118 3.882 17 C -0.019 4.019 18 F -0.153 7.153 19 C -0.076 4.076 20 C -0.171 4.171 21 C 0.571 3.429 22 N -0.869 5.869 23 O -0.506 6.506 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.391 0.609 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -5.812 -5.923 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.044 3.956 5 N -0.254 5.254 6 C -0.338 4.338 7 H 0.106 0.894 8 C -0.212 4.212 9 N -0.554 5.554 10 Si 0.755 3.245 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.316 3.684 15 N -0.182 5.182 16 C -0.046 4.046 17 C -0.042 4.042 18 F -0.132 7.132 19 C -0.104 4.104 20 C -0.182 4.182 21 C 0.357 3.643 22 N -0.434 5.434 23 O -0.380 6.380 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.219 0.781 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.361 -5.936 -4.829 7.661 hybrid contribution 1.519 1.231 -0.022 1.955 sum 1.158 -4.705 -4.851 6.857 Atomic orbital electron populations 1.21753 0.96601 1.00536 1.01696 1.21496 0.95219 0.98150 1.01179 1.22250 0.98529 0.94669 1.02577 1.20764 0.91122 0.83827 0.99917 1.41038 1.73350 1.10395 1.00636 1.19370 1.38760 0.91205 0.84437 0.89439 1.24794 1.01654 0.96955 0.97775 1.69063 1.50069 1.12309 1.23953 0.85949 0.77893 0.78761 0.81862 1.21054 1.21682 1.20948 1.17221 0.85012 0.82279 0.83905 1.67813 1.37523 1.07564 1.05274 1.22442 0.93233 0.97153 0.91771 1.18349 0.96475 1.03333 0.85995 1.91390 1.94899 1.81256 1.45704 1.21256 0.97849 0.96547 0.94704 1.20849 0.97191 1.04467 0.95672 1.17911 0.81909 0.80502 0.83942 1.43820 1.10364 1.56055 1.33167 1.90812 1.80729 1.42326 1.24123 0.92931 0.93022 0.93598 0.92771 0.92483 0.91808 0.92199 0.92348 0.94348 0.92508 0.83934 0.85915 0.78081 0.77633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.80 5.93 -26.73 -0.16 -1.96 16 3 C -0.14 -2.60 5.51 -26.73 -0.15 -2.75 16 4 C 0.17 3.56 4.70 -4.04 -0.02 3.54 16 5 N -0.54 -13.30 1.24 -114.80 -0.14 -13.45 16 6 C -0.21 -5.65 9.12 -15.07 -0.14 -5.78 16 7 H 0.09 2.30 7.84 -52.49 -0.41 1.89 16 8 C -0.02 -0.44 5.44 -17.46 -0.09 -0.54 16 9 N -0.91 -25.19 9.77 55.49 0.54 -24.64 16 10 Si 0.93 22.17 29.56 -169.99 -5.02 17.14 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.55 13.21 3.51 -155.11 -0.55 12.66 16 15 N -0.47 -11.13 9.82 -12.12 -0.12 -11.25 16 16 C 0.12 2.43 11.15 -17.41 -0.19 2.23 16 17 C -0.02 -0.37 7.33 -39.31 -0.29 -0.66 16 18 F -0.15 -2.74 17.28 2.25 0.04 -2.70 16 19 C -0.08 -1.44 9.61 -38.82 -0.37 -1.81 16 20 C -0.17 -3.76 5.19 -104.62 -0.54 -4.30 16 21 C 0.57 12.07 8.03 -12.51 -0.10 11.97 16 22 N -0.87 -13.34 8.83 30.44 0.27 -13.07 16 23 O -0.51 -12.32 14.63 5.28 0.08 -12.24 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 32 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 35 H 0.12 1.85 6.55 -52.48 -0.34 1.50 16 36 H 0.39 4.92 6.96 -40.82 -0.28 4.63 16 37 H 0.39 5.23 8.93 -40.82 -0.36 4.87 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -31.15 317.61 -6.56 -37.71 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.76 Total: 6.67 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -2.23 Total: 11.04 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.55 Total: -62.41 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.15 -6.56 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.667 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds