Wall clock time and date at job start Tue Mar 31 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 N 1.46506 * 109.46695 * 240.00272 * 2 1 3 5 5 C 1.38751 * 119.99965 * 84.99993 * 4 2 1 6 6 C 1.38681 * 120.28229 * 359.97438 * 5 4 2 7 7 C 1.38311 * 120.01045 * 179.97438 * 6 5 4 8 8 Cl 1.73602 * 119.70183 * 180.02562 * 7 6 5 9 9 C 1.39057 * 120.59962 * 0.02562 * 7 6 5 10 10 C 1.36410 * 120.57462 * 359.97438 * 9 7 6 11 11 C 1.40757 * 119.96420 * 0.24938 * 10 9 7 12 12 C 1.41013 * 120.29011 * 179.74762 * 11 10 9 13 13 H 1.08003 * 119.99694 * 205.51848 * 12 11 10 14 14 C 1.39908 * 120.00593 * 25.51944 * 12 11 10 15 15 N 1.30897 * 119.99316 * 15.36744 * 14 12 11 16 16 Si 1.86797 * 120.00275 * 195.37089 * 14 12 11 17 17 H 1.48499 * 109.47218 * 89.99798 * 16 14 12 18 18 H 1.48504 * 109.47127 * 209.99720 * 16 14 12 19 19 H 1.48498 * 109.46990 * 329.99963 * 16 14 12 20 20 C 1.52994 * 109.47175 * 120.00268 * 2 1 3 21 21 C 1.52998 * 109.47080 * 179.97438 * 20 2 1 22 22 C 1.53002 * 109.47353 * 299.99691 * 20 2 1 23 23 C 1.53005 * 109.47149 * 60.00067 * 20 2 1 24 24 H 1.08999 * 109.46993 * 59.99707 * 1 2 3 25 25 H 1.08994 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46917 * 299.99667 * 1 2 3 27 27 H 0.96997 * 119.99961 * 264.99786 * 4 2 1 28 28 H 1.07994 * 119.99150 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.71753 * 179.97438 * 9 7 6 30 30 H 1.07994 * 120.02372 * 179.97438 * 10 9 7 31 31 H 0.97008 * 119.99379 * 179.97438 * 15 14 12 32 32 H 1.08998 * 109.47425 * 60.00003 * 21 20 2 33 33 H 1.09001 * 109.47582 * 180.02562 * 21 20 2 34 34 H 1.09003 * 109.46996 * 299.99532 * 21 20 2 35 35 H 1.09006 * 109.46366 * 60.00405 * 22 20 2 36 36 H 1.08995 * 109.46938 * 179.97438 * 22 20 2 37 37 H 1.08994 * 109.47096 * 300.00429 * 22 20 2 38 38 H 1.08992 * 109.47249 * 59.99780 * 23 20 2 39 39 H 1.08999 * 109.47260 * 180.02562 * 23 20 2 40 40 H 1.09000 * 109.46771 * 299.99739 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1508 0.0016 -2.3915 6 6 1.8222 1.3472 -2.4604 7 6 1.9569 2.0319 -3.6546 8 17 1.5439 3.7163 -3.7316 9 6 2.4202 1.3833 -4.7940 10 6 2.7503 0.0604 -4.7536 11 6 2.6180 -0.6608 -3.5520 12 6 2.9523 -2.0299 -3.5037 13 1 2.4929 -2.6722 -2.7669 14 6 3.8790 -2.5562 -4.4102 15 7 4.6539 -1.7531 -5.0942 16 14 4.0101 -4.4048 -4.6444 17 1 3.0845 -4.8340 -5.7233 18 1 5.4033 -4.7589 -5.0174 19 1 3.6469 -5.0911 -3.3786 20 6 2.0401 -0.7213 1.2492 21 6 3.5701 -0.7218 1.2488 22 6 1.5302 -0.0001 2.4985 23 6 1.5301 -2.1638 1.2491 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.2490 -1.6317 -1.1528 28 1 1.4611 1.8604 -1.5815 29 1 2.5195 1.9317 -5.7191 30 1 3.1088 -0.4346 -5.6439 31 1 5.2967 -2.1181 -5.7225 32 1 3.9338 0.3057 1.2486 33 1 3.9335 -1.2361 2.1385 34 1 3.9330 -1.2360 0.3588 35 1 0.4401 -0.0002 2.4985 36 1 1.8932 -0.5142 3.3884 37 1 1.8935 1.0275 2.4985 38 1 1.8933 -2.6776 0.3591 39 1 1.8930 -2.6776 2.1393 40 1 0.4401 -2.1638 1.2491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168686791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:20 Heat of formation + Delta-G solvation = -8.154939 kcal Electronic energy + Delta-G solvation = -20477.201116 eV Core-core repulsion = 17509.482263 eV Total energy + Delta-G solvation = -2967.718853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.01823 -37.36135 -35.35280 -33.72031 -33.12281 -30.12045 -29.18572 -27.97641 -27.15972 -26.47564 -25.00133 -22.95396 -21.08730 -20.12615 -18.20132 -17.31677 -16.47294 -15.45310 -15.06903 -14.44435 -14.22472 -13.97352 -13.62354 -13.44236 -12.95202 -12.81831 -12.47294 -12.20113 -12.10170 -11.82807 -11.66961 -11.61588 -11.52710 -11.32046 -11.17933 -11.09061 -10.77143 -10.66458 -10.52308 -10.24184 -10.08588 -10.00049 -9.66068 -9.55824 -9.15691 -8.78047 -7.35852 -6.80176 -6.35112 -4.21798 2.66954 3.05607 3.07244 3.09062 3.13924 3.48934 3.91102 4.45877 4.60817 4.87151 4.99846 5.13284 5.56548 5.58193 5.62359 5.72795 5.76494 5.88872 5.94816 5.99870 6.08058 6.13592 6.17377 6.19943 6.32083 6.35506 6.44096 6.48621 6.60242 6.74657 6.87354 6.98800 7.15495 7.34203 7.43096 7.72137 7.94230 8.05899 8.33206 8.63644 8.77482 8.91601 9.03038 10.20044 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.010233 B = 0.008302 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.516749 B = 3372.047043 C = 5670.002823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.166 3.834 3 H 0.068 0.932 4 N -0.737 5.737 5 C 0.130 3.870 6 C -0.168 4.168 7 C -0.103 4.103 8 Cl -0.137 7.137 9 C -0.129 4.129 10 C -0.136 4.136 11 C 0.070 3.930 12 C -0.457 4.457 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.796 5.796 16 Si 0.905 3.095 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.075 4.075 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.143 4.143 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.396 0.604 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.279 0.721 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -0.042 9.188 9.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.059 3.941 3 H 0.086 0.914 4 N -0.372 5.372 5 C 0.029 3.971 6 C -0.192 4.192 7 C -0.131 4.131 8 Cl -0.109 7.109 9 C -0.149 4.149 10 C -0.157 4.157 11 C 0.065 3.935 12 C -0.487 4.487 13 H 0.091 0.909 14 C -0.142 4.142 15 N -0.422 5.422 16 Si 0.730 3.270 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.075 4.075 21 C -0.196 4.196 22 C -0.197 4.197 23 C -0.200 4.200 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.233 0.767 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.616 0.211 9.127 9.820 hybrid contribution 0.238 -0.945 -0.187 0.992 sum -3.378 -0.734 8.940 9.585 Atomic orbital electron populations 1.22412 0.97291 1.01846 1.01366 1.20622 0.92652 0.96196 0.84650 0.91365 1.44062 1.74978 1.12000 1.06126 1.17700 1.03012 0.90118 0.86229 1.19832 1.10168 0.93227 0.95959 1.19961 1.14656 0.82116 0.96332 1.98217 1.93358 1.20500 1.98841 1.20174 1.03628 0.95548 0.95578 1.20766 1.04185 0.92506 0.98248 1.17316 0.93319 0.93562 0.89303 1.19160 1.21002 0.93791 1.14765 0.90927 1.25791 0.93980 0.99972 0.94424 1.69831 1.15458 1.36821 1.20098 0.86355 0.78087 0.82830 0.79679 1.19407 1.20420 1.18834 1.20764 0.96068 0.95780 0.94911 1.21828 0.94214 1.01846 1.01735 1.21894 1.01080 1.00131 0.96617 1.21916 1.01077 0.95484 1.01546 0.92306 0.92560 0.92787 0.76721 0.88186 0.88836 0.85584 0.90968 0.92896 0.93392 0.91624 0.92346 0.92869 0.92700 0.92326 0.93075 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 8.71 37.16 0.32 -2.12 16 2 C 0.17 2.57 1.54 -67.93 -0.10 2.46 16 3 H 0.07 1.14 6.48 -51.93 -0.34 0.81 16 4 N -0.74 -13.92 4.38 -51.74 -0.23 -14.15 16 5 C 0.13 2.92 6.66 -83.30 -0.56 2.37 16 6 C -0.17 -3.69 8.60 -39.39 -0.34 -4.03 16 7 C -0.10 -2.32 6.33 -39.25 -0.25 -2.57 16 8 Cl -0.14 -2.70 28.94 -51.86 -1.50 -4.20 16 9 C -0.13 -3.03 9.74 -39.94 -0.39 -3.42 16 10 C -0.14 -3.43 8.63 -39.29 -0.34 -3.76 16 11 C 0.07 1.74 5.59 -106.63 -0.60 1.15 16 12 C -0.46 -11.23 8.50 -37.91 -0.32 -11.56 16 13 H 0.07 1.70 6.70 -52.48 -0.35 1.35 16 14 C 0.08 1.80 5.18 -17.32 -0.09 1.71 16 15 N -0.80 -19.91 10.88 55.55 0.60 -19.31 16 16 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.07 -0.97 0.59 -154.51 -0.09 -1.06 16 21 C -0.14 -1.90 8.32 37.16 0.31 -1.59 16 22 C -0.14 -1.52 8.12 37.16 0.30 -1.21 16 23 C -0.14 -1.76 7.95 37.16 0.30 -1.47 16 24 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 25 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 26 H 0.05 0.66 6.43 -51.93 -0.33 0.32 16 27 H 0.40 7.51 4.88 -40.82 -0.20 7.31 16 28 H 0.10 2.04 6.10 -52.49 -0.32 1.72 16 29 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.13 3.29 6.13 -52.49 -0.32 2.97 16 31 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.04 7.44 -51.93 -0.39 0.65 16 35 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.80 6.50 -51.93 -0.34 0.46 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -25.14 324.27 -8.77 -33.91 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.66 Total: 10.89 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -1.84 Total: -25.10 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.38 Total: -33.46 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -1.50 Total: -4.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -25.14 -8.77 -33.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168686791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.754 kcal (2) G-P(sol) polarization free energy of solvation -25.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds