Wall clock time and date at job start Tue Mar 31 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 N 1.46506 * 109.46695 * 240.00272 * 2 1 3 5 5 C 1.38751 * 119.99965 * 84.99993 * 4 2 1 6 6 C 1.38681 * 120.28229 * 359.97438 * 5 4 2 7 7 C 1.38311 * 120.01045 * 179.97438 * 6 5 4 8 8 Cl 1.73602 * 119.70183 * 180.02562 * 7 6 5 9 9 C 1.39057 * 120.59962 * 0.02562 * 7 6 5 10 10 C 1.36410 * 120.57462 * 359.97438 * 9 7 6 11 11 C 1.40757 * 119.96420 * 0.24938 * 10 9 7 12 12 C 1.41013 * 120.29011 * 179.74762 * 11 10 9 13 13 H 1.08003 * 119.99694 * 205.51848 * 12 11 10 14 14 C 1.39908 * 120.00593 * 25.51944 * 12 11 10 15 15 N 1.30897 * 119.99316 * 15.36744 * 14 12 11 16 16 Si 1.86797 * 120.00275 * 195.37089 * 14 12 11 17 17 H 1.48499 * 109.47218 * 89.99798 * 16 14 12 18 18 H 1.48504 * 109.47127 * 209.99720 * 16 14 12 19 19 H 1.48498 * 109.46990 * 329.99963 * 16 14 12 20 20 C 1.52994 * 109.47175 * 120.00268 * 2 1 3 21 21 C 1.52998 * 109.47080 * 179.97438 * 20 2 1 22 22 C 1.53002 * 109.47353 * 299.99691 * 20 2 1 23 23 C 1.53005 * 109.47149 * 60.00067 * 20 2 1 24 24 H 1.08999 * 109.46993 * 59.99707 * 1 2 3 25 25 H 1.08994 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46917 * 299.99667 * 1 2 3 27 27 H 0.96997 * 119.99961 * 264.99786 * 4 2 1 28 28 H 1.07994 * 119.99150 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.71753 * 179.97438 * 9 7 6 30 30 H 1.07994 * 120.02372 * 179.97438 * 10 9 7 31 31 H 0.97008 * 119.99379 * 179.97438 * 15 14 12 32 32 H 1.08998 * 109.47425 * 60.00003 * 21 20 2 33 33 H 1.09001 * 109.47582 * 180.02562 * 21 20 2 34 34 H 1.09003 * 109.46996 * 299.99532 * 21 20 2 35 35 H 1.09006 * 109.46366 * 60.00405 * 22 20 2 36 36 H 1.08995 * 109.46938 * 179.97438 * 22 20 2 37 37 H 1.08994 * 109.47096 * 300.00429 * 22 20 2 38 38 H 1.08992 * 109.47249 * 59.99780 * 23 20 2 39 39 H 1.08999 * 109.47260 * 180.02562 * 23 20 2 40 40 H 1.09000 * 109.46771 * 299.99739 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1508 0.0016 -2.3915 6 6 1.8222 1.3472 -2.4604 7 6 1.9569 2.0319 -3.6546 8 17 1.5439 3.7163 -3.7316 9 6 2.4202 1.3833 -4.7940 10 6 2.7503 0.0604 -4.7536 11 6 2.6180 -0.6608 -3.5520 12 6 2.9523 -2.0299 -3.5037 13 1 2.4929 -2.6722 -2.7669 14 6 3.8790 -2.5562 -4.4102 15 7 4.6539 -1.7531 -5.0942 16 14 4.0101 -4.4048 -4.6444 17 1 3.0845 -4.8340 -5.7233 18 1 5.4033 -4.7589 -5.0174 19 1 3.6469 -5.0911 -3.3786 20 6 2.0401 -0.7213 1.2492 21 6 3.5701 -0.7218 1.2488 22 6 1.5302 -0.0001 2.4985 23 6 1.5301 -2.1638 1.2491 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.2490 -1.6317 -1.1528 28 1 1.4611 1.8604 -1.5815 29 1 2.5195 1.9317 -5.7191 30 1 3.1088 -0.4346 -5.6439 31 1 5.2967 -2.1181 -5.7225 32 1 3.9338 0.3057 1.2486 33 1 3.9335 -1.2361 2.1385 34 1 3.9330 -1.2360 0.3588 35 1 0.4401 -0.0002 2.4985 36 1 1.8932 -0.5142 3.3884 37 1 1.8935 1.0275 2.4985 38 1 1.8933 -2.6776 0.3591 39 1 1.8930 -2.6776 2.1393 40 1 0.4401 -2.1638 1.2491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168686791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:20 Heat of formation + Delta-G solvation = -18.491241 kcal Electronic energy + Delta-G solvation = -20477.649332 eV Core-core repulsion = 17509.482263 eV Total energy + Delta-G solvation = -2968.167069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44610 -38.88456 -37.04868 -35.42911 -34.70337 -31.67926 -30.78388 -29.45804 -28.16873 -27.65960 -26.77039 -24.28276 -22.83005 -21.80651 -19.49183 -19.06008 -18.08980 -16.92238 -16.69231 -15.88129 -15.70921 -15.27197 -14.96527 -14.67428 -14.55004 -14.36948 -14.08352 -13.64900 -13.42492 -13.17947 -13.05007 -12.96577 -12.79638 -12.71338 -12.67420 -12.33517 -12.20121 -12.03448 -11.83353 -11.60439 -11.53424 -11.43955 -11.26070 -11.16713 -10.94074 -10.43445 -9.19375 -8.59674 -8.06358 -6.06946 0.88318 1.26593 1.40919 1.50294 1.51966 1.72530 2.23383 2.77376 3.02498 3.73840 3.78191 3.96182 4.07154 4.39497 4.52364 4.55648 4.60161 4.63807 4.83704 4.85346 4.88916 4.96436 5.07089 5.07734 5.09923 5.12542 5.18553 5.23377 5.27255 5.35802 5.41374 5.49825 5.59385 5.61361 5.64845 5.90692 6.08954 6.23268 6.51670 6.85231 6.97332 7.19451 7.33290 8.42507 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.010233 B = 0.008302 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.516749 B = 3372.047043 C = 5670.002823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 H 0.057 0.943 4 N -0.732 5.732 5 C 0.135 3.865 6 C -0.176 4.176 7 C -0.103 4.103 8 Cl -0.110 7.110 9 C -0.143 4.143 10 C -0.156 4.156 11 C 0.037 3.963 12 C -0.478 4.478 13 H 0.077 0.923 14 C 0.035 3.965 15 N -0.831 5.831 16 Si 0.974 3.026 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.256 1.256 20 C -0.069 4.069 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.141 4.141 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.394 0.606 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.284 0.716 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 -0.396 11.318 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.075 0.925 4 N -0.365 5.365 5 C 0.033 3.967 6 C -0.200 4.200 7 C -0.131 4.131 8 Cl -0.082 7.082 9 C -0.164 4.164 10 C -0.178 4.178 11 C 0.032 3.968 12 C -0.508 4.508 13 H 0.095 0.905 14 C -0.179 4.179 15 N -0.458 5.458 16 Si 0.796 3.204 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.180 1.180 20 C -0.070 4.070 21 C -0.195 4.195 22 C -0.193 4.193 23 C -0.198 4.198 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.231 0.769 28 H 0.135 0.865 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.471 -0.135 11.294 12.147 hybrid contribution 0.471 -0.707 -0.785 1.156 sum -4.000 -0.841 10.509 11.276 Atomic orbital electron populations 1.22337 0.95956 1.02219 1.01676 1.20864 0.93584 0.95636 0.84411 0.92466 1.44216 1.74230 1.11952 1.06091 1.17849 1.01433 0.90518 0.86895 1.20010 1.10430 0.93143 0.96466 1.20122 1.13305 0.83596 0.96057 1.98216 1.93068 1.18083 1.98806 1.20268 1.04311 0.95243 0.96541 1.20711 1.05593 0.93411 0.98044 1.17634 0.94652 0.94306 0.90163 1.19374 1.21697 0.94036 1.15740 0.90494 1.26581 0.93280 1.04246 0.93805 1.69907 1.16207 1.38767 1.20878 0.85310 0.78034 0.77347 0.79693 1.19279 1.19982 1.17978 1.20739 0.95389 0.96271 0.94582 1.21811 0.94966 1.01323 1.01363 1.21867 1.01732 0.99995 0.95702 1.21906 1.01576 0.94844 1.01518 0.94446 0.92153 0.89989 0.76882 0.86513 0.87939 0.87382 0.90583 0.93497 0.91341 0.94382 0.91270 0.91254 0.92633 0.94183 0.91283 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 8.71 71.98 0.63 -3.73 16 2 C 0.16 4.77 1.54 44.99 0.07 4.84 16 3 H 0.06 1.84 6.48 -2.39 -0.02 1.83 16 4 N -0.73 -27.62 4.38 -317.62 -1.39 -29.01 16 5 C 0.14 6.18 6.66 38.97 0.26 6.44 16 6 C -0.18 -7.71 8.60 22.39 0.19 -7.52 16 7 C -0.10 -4.62 6.33 22.48 0.14 -4.48 16 8 Cl -0.11 -4.19 28.94 -2.72 -0.08 -4.27 16 9 C -0.14 -6.88 9.74 22.04 0.21 -6.66 16 10 C -0.16 -8.19 8.63 22.46 0.19 -7.99 16 11 C 0.04 1.92 5.59 -21.16 -0.12 1.80 16 12 C -0.48 -24.13 8.50 23.36 0.20 -23.93 16 13 H 0.08 3.67 6.70 -2.91 -0.02 3.65 16 14 C 0.03 1.69 5.18 85.24 0.44 2.13 16 15 N -0.83 -42.91 10.88 21.82 0.24 -42.67 16 16 Si 0.97 37.47 29.59 68.60 2.03 39.50 16 17 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 20 C -0.07 -1.64 0.59 -52.18 -0.03 -1.67 16 21 C -0.14 -3.58 8.32 71.98 0.60 -2.98 16 22 C -0.14 -2.47 8.12 71.98 0.58 -1.88 16 23 C -0.14 -3.15 7.95 71.98 0.57 -2.58 16 24 H 0.04 1.15 7.69 -2.39 -0.02 1.13 16 25 H 0.06 1.56 6.43 -2.39 -0.02 1.54 16 26 H 0.08 1.72 6.43 -2.39 -0.02 1.71 16 27 H 0.39 15.09 4.88 -92.71 -0.45 14.64 16 28 H 0.12 4.64 6.10 -2.91 -0.02 4.63 16 29 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 30 H 0.11 5.95 6.13 -2.91 -0.02 5.93 16 31 H 0.28 13.45 8.30 -92.70 -0.77 12.68 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.19 7.44 -2.39 -0.02 1.17 16 35 H 0.07 1.13 6.43 -2.38 -0.02 1.11 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.04 1.04 6.50 -2.39 -0.02 1.02 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.37 6.43 -2.39 -0.02 1.35 16 Total: -1.00 -54.77 324.27 5.34 -49.43 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.59 Total: 35.23 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 3.95 Total: -48.22 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.15 Total: -71.68 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Atomic # 17 Polarization: -4.19 SS G_CDS: -0.08 Total: -4.27 kcal Total: -54.77 5.34 -49.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168686791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.941 kcal (2) G-P(sol) polarization free energy of solvation -54.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds