Wall clock time and date at job start Tue Mar 31 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.47222 * 2 1 4 4 C 1.46905 * 110.99533 * 61.31732 * 3 2 1 5 5 C 1.50704 * 109.47002 * 62.89626 * 4 3 2 6 6 H 1.07997 * 120.00192 * 5.26055 * 5 4 3 7 7 C 1.37876 * 119.99907 * 185.25725 * 5 4 3 8 8 N 1.31515 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47113 * 90.00481 * 9 7 5 11 11 H 1.48507 * 109.47068 * 209.99965 * 9 7 5 12 12 H 1.48497 * 109.47222 * 330.00241 * 9 7 5 13 13 C 1.46898 * 110.99865 * 297.36800 * 3 2 1 14 14 H 1.09000 * 109.47199 * 60.00444 * 13 3 2 15 15 C 1.53000 * 109.47026 * 180.02562 * 13 3 2 16 16 C 1.52998 * 109.46948 * 300.00175 * 13 3 2 17 17 C 1.50697 * 109.47341 * 178.10314 * 16 13 3 18 18 C 1.38235 * 120.01218 * 96.84585 * 17 16 13 19 19 C 1.38217 * 120.01811 * 180.02562 * 18 17 16 20 20 C 1.38269 * 120.02240 * 359.96389 * 19 18 17 21 21 C 1.38188 * 120.01670 * 0.02562 * 20 19 18 22 22 C 1.38335 * 120.00541 * 277.12770 * 17 16 13 23 23 Cl 1.73608 * 120.01391 * 359.97438 * 22 17 16 24 24 H 1.08999 * 109.47383 * 60.66143 * 1 2 3 25 25 H 1.09007 * 109.46675 * 180.65591 * 1 2 3 26 26 H 1.08995 * 109.47672 * 300.65170 * 1 2 3 27 27 H 1.08997 * 109.47512 * 240.00237 * 2 1 3 28 28 H 1.08999 * 109.47346 * 120.00365 * 2 1 3 29 29 H 1.09000 * 109.46654 * 182.89337 * 4 3 2 30 30 H 1.08999 * 109.47145 * 302.90054 * 4 3 2 31 31 H 0.96995 * 120.00419 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47353 * 179.97438 * 15 13 3 33 33 H 1.08997 * 109.47086 * 299.99973 * 15 13 3 34 34 H 1.09000 * 109.47069 * 59.99996 * 15 13 3 35 35 H 1.09004 * 109.47161 * 58.10077 * 16 13 3 36 36 H 1.09007 * 109.47432 * 298.10043 * 16 13 3 37 37 H 1.08002 * 119.99071 * 0.02562 * 18 17 16 38 38 H 1.07998 * 119.98862 * 179.97438 * 19 18 17 39 39 H 1.08006 * 119.98828 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.00882 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5745 2.1007 1.2032 5 6 2.1620 1.4428 2.4252 6 1 2.8687 0.6335 2.3157 7 6 1.7974 1.8742 3.6829 8 7 0.9365 2.8595 3.8163 9 14 2.5261 1.0593 5.1975 10 1 3.7727 1.7655 5.5882 11 1 1.5490 1.1258 6.3139 12 1 2.8359 -0.3611 4.8948 13 6 1.6007 2.0915 -1.2179 14 1 0.5123 2.1057 -1.2735 15 6 2.1288 3.5270 -1.1820 16 6 2.1648 1.3716 -2.4445 17 6 1.6967 2.0691 -3.6957 18 6 2.5136 2.9943 -4.3183 19 6 2.0842 3.6345 -5.4656 20 6 0.8377 3.3494 -5.9916 21 6 0.0202 2.4245 -5.3703 22 6 0.4471 1.7880 -4.2182 23 17 -0.5822 0.6311 -3.4331 24 1 -0.3634 0.5035 -0.8958 25 1 -0.3633 -1.0277 0.0118 26 1 -0.3634 0.5239 0.8840 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.9073 3.1374 1.1532 30 1 0.4865 2.0707 1.2621 31 1 0.6797 3.1628 4.7010 32 1 1.8184 4.0511 -2.0859 33 1 1.7274 4.0400 -0.3081 34 1 3.2173 3.5125 -1.1266 35 1 1.8160 0.3390 -2.4521 36 1 3.2540 1.3870 -2.4059 37 1 3.4876 3.2170 -3.9082 38 1 2.7226 4.3575 -5.9514 39 1 0.5029 3.8496 -6.8883 40 1 -0.9532 2.2016 -5.7815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170284467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:03 Heat of formation + Delta-G solvation = -1.716740 kcal Electronic energy + Delta-G solvation = -20308.048333 eV Core-core repulsion = 17340.608661 eV Total energy + Delta-G solvation = -2967.439672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70114 -39.19493 -37.35116 -35.22137 -34.18279 -31.93885 -31.61108 -30.33945 -28.16949 -27.48716 -24.72985 -23.75230 -23.44602 -22.13476 -19.98401 -18.39777 -17.95651 -16.99734 -16.81084 -16.63505 -16.09582 -15.80455 -15.25269 -14.92569 -14.67713 -14.38045 -13.90900 -13.81965 -13.65717 -13.39788 -13.19948 -13.13254 -12.77183 -12.63346 -12.52391 -12.37123 -12.29051 -12.25052 -12.04506 -11.88984 -11.68190 -11.44645 -11.17152 -11.13345 -10.53642 -9.76861 -9.53412 -8.85460 -8.16030 -6.24294 0.25335 0.36962 1.24742 1.41057 1.42037 1.52920 2.42046 2.72181 3.16867 3.32359 3.84501 3.91102 4.08914 4.14057 4.23854 4.32789 4.45513 4.47495 4.52305 4.54648 4.67145 4.74779 4.78480 4.88187 4.98225 5.00794 5.02954 5.13494 5.25137 5.30967 5.34162 5.37665 5.45660 5.52452 5.55425 5.59194 5.72287 5.95104 6.14003 6.43478 6.75833 6.93514 7.44589 8.94800 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.004474 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.666314 B = 6256.857619 C = 6752.951270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 N -0.535 5.535 4 C 0.204 3.796 5 C -0.517 4.517 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.089 3.911 14 H 0.024 0.976 15 C -0.138 4.138 16 C -0.069 4.069 17 C -0.077 4.077 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.054 4.054 23 Cl -0.081 7.081 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.010 0.990 30 H -0.031 1.031 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -0.593 -21.157 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.066 4.066 3 N -0.258 5.258 4 C 0.078 3.922 5 C -0.555 4.555 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.788 3.212 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C -0.020 4.020 14 H 0.042 0.958 15 C -0.195 4.195 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.080 4.080 23 Cl -0.052 7.052 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.028 0.972 30 H -0.013 1.013 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.160 0.840 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.851 -0.611 -20.946 20.972 hybrid contribution -1.071 -0.304 1.449 1.827 sum -0.221 -0.915 -19.497 19.520 Atomic orbital electron populations 1.22337 0.99076 1.01667 1.01011 1.21980 0.92506 0.90690 1.01406 1.62315 1.59304 1.02384 1.01841 1.19446 0.92160 0.93449 0.87171 1.21481 1.24921 1.17964 0.91151 0.92149 1.25834 0.95597 0.95816 1.02264 1.70090 1.34614 1.28978 1.23932 0.85474 0.78069 0.79142 0.78490 1.19909 1.21047 1.18960 1.21465 0.96423 0.94223 0.89864 0.95841 1.21857 1.01660 0.95210 1.00788 1.20627 1.01719 0.98737 0.89595 1.19805 0.93045 0.98150 0.96813 1.21309 1.00266 0.95279 0.95936 1.21606 0.96690 0.99379 0.95321 1.21464 0.93899 0.96941 1.00745 1.21294 1.01470 0.97057 0.93900 1.21106 0.92808 0.97117 0.97016 1.98364 1.67363 1.59014 1.80447 0.91935 0.91737 0.95223 0.90094 0.92276 0.97167 1.01330 0.92943 0.91126 0.94858 0.91822 0.90662 0.89644 0.84029 0.82658 0.82349 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.09 9.23 71.98 0.66 -6.42 16 2 C 0.06 2.48 5.52 86.30 0.48 2.95 16 3 N -0.53 -23.24 4.60 -875.52 -4.02 -27.27 16 4 C 0.20 10.95 4.15 85.56 0.35 11.30 16 5 C -0.52 -29.60 8.36 25.60 0.21 -29.38 16 6 H 0.06 3.41 7.10 -2.91 -0.02 3.38 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.09 3.22 1.82 44.92 0.08 3.30 16 14 H 0.02 0.93 5.86 -2.39 -0.01 0.92 16 15 C -0.14 -4.83 8.44 71.98 0.61 -4.22 16 16 C -0.07 -2.01 4.16 29.85 0.12 -1.89 16 17 C -0.08 -1.93 4.41 -19.84 -0.09 -2.01 16 18 C -0.11 -2.22 8.45 22.26 0.19 -2.03 16 19 C -0.11 -1.76 10.05 22.27 0.22 -1.53 16 20 C -0.11 -1.72 10.05 22.27 0.22 -1.50 16 21 C -0.12 -2.31 9.83 22.29 0.22 -2.09 16 22 C -0.05 -1.34 6.32 22.33 0.14 -1.19 16 23 Cl -0.08 -2.17 25.20 -2.72 -0.07 -2.23 16 24 H 0.06 2.27 4.66 -2.39 -0.01 2.26 16 25 H 0.06 2.17 8.14 -2.38 -0.02 2.16 16 26 H 0.03 1.36 6.33 -2.39 -0.02 1.34 16 27 H 0.08 2.75 6.12 -2.39 -0.01 2.73 16 28 H 0.06 2.58 6.72 -2.39 -0.02 2.56 16 29 H 0.01 0.60 5.86 -2.39 -0.01 0.58 16 30 H -0.03 -1.83 6.17 -2.39 -0.01 -1.85 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.07 2.09 6.53 -2.39 -0.02 2.08 16 33 H 0.03 1.35 6.20 -2.39 -0.01 1.34 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.22 5.33 -2.39 -0.01 2.21 16 36 H 0.08 2.38 8.04 -2.38 -0.02 2.36 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -65.69 321.93 3.15 -62.54 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.04 Total: 10.87 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.89 Total: -34.11 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.74 Total: -84.16 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.07 Total: -2.23 kcal Total: -65.69 3.15 -62.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170284467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.822 kcal (2) G-P(sol) polarization free energy of solvation -65.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds