Wall clock time and date at job start Tue Mar 31 2020 05:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 C 1.50696 * 109.47273 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00287 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99620 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47062 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47183 * 119.99978 * 10 8 6 13 13 H 1.48504 * 109.47125 * 240.00444 * 10 8 6 14 14 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 15 15 C 1.46901 * 110.99793 * 275.00325 * 14 2 1 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 2 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 C 1.38234 * 119.98980 * 269.72388 * 17 16 15 19 19 C 1.38214 * 120.01726 * 179.72692 * 18 17 16 20 20 C 1.38356 * 119.98300 * 0.54688 * 19 18 17 21 21 Cl 1.73601 * 120.01261 * 179.70637 * 20 19 18 22 22 C 1.38353 * 119.97255 * 359.72512 * 20 19 18 23 23 C 1.38213 * 119.98759 * 0.02562 * 22 20 19 24 24 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 25 25 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 26 26 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 28 28 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 29 29 H 1.08999 * 109.47179 * 300.00188 * 5 4 2 30 30 H 1.09004 * 109.46918 * 59.99924 * 5 4 2 31 31 H 0.97000 * 119.99481 * 179.97438 * 9 8 6 32 32 H 1.00899 * 110.99995 * 151.04723 * 14 2 1 33 33 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 34 34 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 35 35 H 1.09001 * 109.47194 * 299.99524 * 16 15 14 36 36 H 1.08992 * 109.47399 * 59.99697 * 16 15 14 37 37 H 1.08001 * 119.99359 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.01031 * 180.27799 * 19 18 17 39 39 H 1.08002 * 120.00493 * 179.97438 * 22 20 19 40 40 H 1.08002 * 119.99305 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0673 -1.3243 -2.5437 7 1 3.3687 -1.8047 -3.2129 8 6 5.4185 -1.3605 -2.8155 9 7 6.2689 -0.7750 -2.0008 10 14 6.0412 -2.2412 -4.3406 11 1 4.8913 -2.8126 -5.0864 12 1 6.7636 -1.2769 -5.2086 13 1 6.9637 -3.3336 -3.9394 14 7 2.0196 -0.6925 1.1995 15 6 2.0823 0.2227 2.3469 16 6 2.5961 -0.5328 3.5742 17 6 2.6610 0.4062 4.7512 18 6 3.8171 1.1215 5.0014 19 6 3.8754 1.9871 6.0774 20 6 2.7801 2.1289 6.9108 21 17 2.8550 3.2102 8.2669 22 6 1.6252 1.4085 6.6631 23 6 1.5664 0.5471 5.5838 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7516 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 3.8532 0.4369 -1.3573 30 1 3.9994 -1.0728 -0.4259 31 1 7.2196 -0.8009 -2.1918 32 1 2.9173 -1.1205 1.0288 33 1 1.0869 0.6164 2.5525 34 1 2.7587 1.0463 2.1182 35 1 1.9201 -1.3566 3.8031 36 1 3.5915 -0.9261 3.3683 37 1 4.6734 1.0077 4.3532 38 1 4.7771 2.5493 6.2702 39 1 0.7700 1.5185 7.3135 40 1 0.6651 -0.0156 5.3906 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:26 Heat of formation + Delta-G solvation = -13.743683 kcal Electronic energy + Delta-G solvation = -18798.886741 eV Core-core repulsion = 15830.925542 eV Total energy + Delta-G solvation = -2967.961199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.64295 -37.37794 -36.67677 -34.10096 -32.83622 -31.26016 -30.83685 -29.23638 -27.18153 -25.10281 -23.03630 -22.90624 -21.36332 -20.98023 -19.49356 -17.27319 -16.44965 -15.93612 -15.65059 -15.13207 -14.92827 -14.52523 -13.97338 -13.74558 -13.68864 -13.43891 -13.03802 -12.54165 -12.45597 -12.24511 -11.85523 -11.72954 -11.61205 -11.32025 -11.22100 -11.19104 -11.02944 -10.95436 -10.78889 -10.47989 -10.22600 -9.77860 -9.29405 -9.24248 -9.04373 -8.71404 -8.38417 -8.01151 -6.03200 -4.05028 0.94070 1.09444 1.91889 3.29334 3.37064 3.41372 3.41781 4.40654 4.44098 4.56643 4.68003 4.95328 5.07012 5.14997 5.29251 5.33309 5.36966 5.46853 5.52035 5.72513 5.75691 5.78659 5.89961 5.98338 6.02048 6.06553 6.11072 6.22028 6.34903 6.46082 6.50252 6.53802 6.62398 6.89778 7.06556 7.48005 7.59803 7.77470 7.88240 7.97100 8.40242 9.01904 9.59385 11.08068 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.002796 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.769344 B =10010.908635 C =10895.008609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.688 5.688 15 C 0.066 3.934 16 C -0.083 4.083 17 C -0.067 4.067 18 C -0.103 4.103 19 C -0.108 4.108 20 C -0.043 4.043 21 Cl -0.079 7.079 22 C -0.110 4.110 23 C -0.105 4.105 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.352 0.648 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 5.002 18.027 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.323 5.323 15 C -0.063 4.063 16 C -0.121 4.121 17 C -0.068 4.068 18 C -0.122 4.122 19 C -0.127 4.127 20 C -0.069 4.069 21 Cl -0.050 7.050 22 C -0.129 4.129 23 C -0.123 4.123 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.165 4.880 18.324 21.061 hybrid contribution 1.309 0.292 -0.875 1.602 sum -7.855 5.172 17.449 19.822 Atomic orbital electron populations 1.21788 0.95788 1.01677 1.00150 1.21593 0.94481 0.96085 0.90530 0.94496 1.21835 0.99664 0.99464 0.94324 1.19129 0.88791 0.96827 0.96926 1.21278 0.91952 1.34094 1.08303 0.92613 1.25027 0.97106 0.95627 0.96732 1.69969 1.02316 1.44205 1.37057 0.86545 0.78859 0.79471 0.83193 1.19729 1.21067 1.21001 1.60607 1.34699 1.32536 1.04460 1.21888 1.00107 0.94049 0.90282 1.20650 1.03076 0.96820 0.91550 1.20072 0.93414 0.96983 0.96291 1.21150 0.98422 0.95686 0.96906 1.21065 0.97696 0.99241 0.94686 1.20921 0.96640 0.97143 0.92233 1.98362 1.98594 1.63674 1.44390 1.21029 0.96810 0.96578 0.98486 1.21066 0.98693 0.98380 0.94138 0.93847 0.93051 0.92375 0.92432 0.92738 0.97000 0.96664 0.93096 0.82626 0.91489 0.95267 0.89881 0.90465 0.84788 0.85013 0.85124 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.41 37.15 0.35 -1.61 16 2 C 0.08 1.41 2.65 -67.71 -0.18 1.23 16 3 H 0.04 0.66 7.80 -51.93 -0.40 0.26 16 4 C -0.11 -2.33 4.74 -26.73 -0.13 -2.46 16 5 C 0.02 0.51 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 7 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.69 -11.05 6.31 -106.72 -0.67 -11.72 16 15 C 0.07 0.90 5.47 -3.82 -0.02 0.88 16 16 C -0.08 -0.96 5.61 -27.88 -0.16 -1.12 16 17 C -0.07 -0.72 5.13 -104.62 -0.54 -1.26 16 18 C -0.10 -1.11 9.70 -39.59 -0.38 -1.50 16 19 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 20 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 21 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 22 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 23 C -0.10 -1.02 9.70 -39.59 -0.38 -1.40 16 24 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.35 6.26 6.47 -39.29 -0.25 6.01 16 33 H 0.07 0.87 7.44 -51.93 -0.39 0.48 16 34 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 35 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 36 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -29.12 345.97 -10.63 -39.75 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.37 Total: 2.09 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.01 Total: -23.81 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.06 Total: -37.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.12 -10.63 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.005 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds