Wall clock time and date at job start Tue Mar 31 2020 05:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 C 1.50696 * 109.47273 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00287 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99620 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47062 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47183 * 119.99978 * 10 8 6 13 13 H 1.48504 * 109.47125 * 240.00444 * 10 8 6 14 14 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 15 15 C 1.46901 * 110.99793 * 275.00325 * 14 2 1 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 2 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 C 1.38234 * 119.98980 * 269.72388 * 17 16 15 19 19 C 1.38214 * 120.01726 * 179.72692 * 18 17 16 20 20 C 1.38356 * 119.98300 * 0.54688 * 19 18 17 21 21 Cl 1.73601 * 120.01261 * 179.70637 * 20 19 18 22 22 C 1.38353 * 119.97255 * 359.72512 * 20 19 18 23 23 C 1.38213 * 119.98759 * 0.02562 * 22 20 19 24 24 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 25 25 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 26 26 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 28 28 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 29 29 H 1.08999 * 109.47179 * 300.00188 * 5 4 2 30 30 H 1.09004 * 109.46918 * 59.99924 * 5 4 2 31 31 H 0.97000 * 119.99481 * 179.97438 * 9 8 6 32 32 H 1.00899 * 110.99995 * 151.04723 * 14 2 1 33 33 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 34 34 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 35 35 H 1.09001 * 109.47194 * 299.99524 * 16 15 14 36 36 H 1.08992 * 109.47399 * 59.99697 * 16 15 14 37 37 H 1.08001 * 119.99359 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.01031 * 180.27799 * 19 18 17 39 39 H 1.08002 * 120.00493 * 179.97438 * 22 20 19 40 40 H 1.08002 * 119.99305 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0673 -1.3243 -2.5437 7 1 3.3687 -1.8047 -3.2129 8 6 5.4185 -1.3605 -2.8155 9 7 6.2689 -0.7750 -2.0008 10 14 6.0412 -2.2412 -4.3406 11 1 4.8913 -2.8126 -5.0864 12 1 6.7636 -1.2769 -5.2086 13 1 6.9637 -3.3336 -3.9394 14 7 2.0196 -0.6925 1.1995 15 6 2.0823 0.2227 2.3469 16 6 2.5961 -0.5328 3.5742 17 6 2.6610 0.4062 4.7512 18 6 3.8171 1.1215 5.0014 19 6 3.8754 1.9871 6.0774 20 6 2.7801 2.1289 6.9108 21 17 2.8550 3.2102 8.2669 22 6 1.6252 1.4085 6.6631 23 6 1.5664 0.5471 5.5838 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7516 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 3.8532 0.4369 -1.3573 30 1 3.9994 -1.0728 -0.4259 31 1 7.2196 -0.8009 -2.1918 32 1 2.9173 -1.1205 1.0288 33 1 1.0869 0.6164 2.5525 34 1 2.7587 1.0463 2.1182 35 1 1.9201 -1.3566 3.8031 36 1 3.5915 -0.9261 3.3683 37 1 4.6734 1.0077 4.3532 38 1 4.7771 2.5493 6.2702 39 1 0.7700 1.5185 7.3135 40 1 0.6651 -0.0156 5.3906 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:26 Heat of formation + Delta-G solvation = -28.258962 kcal Electronic energy + Delta-G solvation = -18799.516171 eV Core-core repulsion = 15830.925542 eV Total energy + Delta-G solvation = -2968.590629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44889 -38.69546 -37.49687 -35.59347 -34.49441 -32.23338 -32.02665 -30.75778 -28.20499 -26.97397 -24.05330 -23.80523 -23.07304 -21.91019 -20.98277 -18.52917 -18.04711 -16.98857 -16.70070 -16.54126 -16.26984 -16.01096 -15.06317 -14.68613 -14.58344 -14.43068 -14.41692 -14.21356 -13.91754 -13.49357 -13.13167 -12.95469 -12.86253 -12.70925 -12.65526 -12.35391 -12.22647 -12.15964 -11.98992 -11.76262 -11.70596 -11.51741 -11.28834 -10.93682 -10.55079 -10.01441 -9.53448 -9.32940 -8.20385 -6.30482 0.13372 0.32260 1.14612 1.39392 1.40174 1.53068 2.40827 2.61395 3.12681 3.25952 3.79259 3.94016 3.99268 4.07886 4.18633 4.22953 4.38298 4.44482 4.47775 4.52037 4.63454 4.77548 4.79339 4.90751 4.98387 5.03158 5.06350 5.09029 5.20529 5.23699 5.25148 5.26543 5.45974 5.54546 5.62961 5.71289 5.83830 5.84895 6.22501 6.26593 6.45510 6.86171 7.38645 8.91098 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.002796 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.769344 B =10010.908635 C =10895.008609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.086 3.914 3 H 0.025 0.975 4 C -0.103 4.103 5 C 0.027 3.973 6 C -0.541 4.541 7 H 0.058 0.942 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.278 1.278 14 N -0.688 5.688 15 C 0.070 3.930 16 C -0.073 4.073 17 C -0.077 4.077 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.051 4.051 21 Cl -0.074 7.074 22 C -0.111 4.111 23 C -0.103 4.103 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.056 0.944 29 H -0.018 1.018 30 H 0.001 0.999 31 H 0.263 0.737 32 H 0.339 0.661 33 H 0.080 0.920 34 H 0.013 0.987 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.099 4.593 18.276 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.024 4.024 3 H 0.043 0.957 4 C -0.141 4.141 5 C -0.010 4.010 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.203 1.203 14 N -0.320 5.320 15 C -0.059 4.059 16 C -0.111 4.111 17 C -0.078 4.078 18 C -0.134 4.134 19 C -0.134 4.134 20 C -0.078 4.078 21 Cl -0.046 7.046 22 C -0.129 4.129 23 C -0.121 4.121 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.000 1.000 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.098 0.902 34 H 0.031 0.969 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.546 4.476 18.580 21.829 hybrid contribution 1.746 0.462 -0.902 2.018 sum -8.800 4.938 17.679 20.356 Atomic orbital electron populations 1.21705 0.93065 1.02254 1.01505 1.21536 0.96510 0.94827 0.89493 0.95723 1.21659 0.96159 0.99950 0.96301 1.19004 0.92136 0.94350 0.95502 1.21718 0.92500 1.34376 1.09290 0.92408 1.25938 0.97404 0.96371 1.00002 1.70091 1.02707 1.45395 1.38947 0.85442 0.78414 0.78288 0.79174 1.18705 1.20543 1.20333 1.60711 1.33700 1.32902 1.04729 1.21927 1.00526 0.93382 0.90112 1.20522 1.02598 0.96991 0.90997 1.20052 0.94037 0.97243 0.96457 1.21239 0.98655 0.96200 0.97333 1.21203 0.98330 0.99268 0.94582 1.21090 0.96943 0.97376 0.92387 1.98363 1.98599 1.63526 1.44080 1.21287 0.97151 0.95941 0.98543 1.21282 0.98890 0.98260 0.93678 0.92160 0.92085 0.92133 0.92447 0.92563 0.99961 0.98086 0.92862 0.84153 0.90173 0.96882 0.88905 0.91487 0.85019 0.84080 0.83156 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.41 71.98 0.68 -2.73 16 2 C 0.09 2.89 2.65 44.91 0.12 3.01 16 3 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 4 C -0.10 -4.18 4.74 30.60 0.15 -4.04 16 5 C 0.03 1.41 4.80 29.85 0.14 1.55 16 6 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 7 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 10 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 14 N -0.69 -21.92 6.31 -491.55 -3.10 -25.02 16 15 C 0.07 1.86 5.47 86.30 0.47 2.33 16 16 C -0.07 -1.66 5.61 29.85 0.17 -1.49 16 17 C -0.08 -1.61 5.13 -19.86 -0.10 -1.71 16 18 C -0.12 -2.49 9.70 22.26 0.22 -2.27 16 19 C -0.12 -2.30 9.83 22.29 0.22 -2.08 16 20 C -0.05 -0.99 6.32 22.33 0.14 -0.85 16 21 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.41 16 22 C -0.11 -1.90 9.83 22.29 0.22 -1.68 16 23 C -0.10 -1.81 9.70 22.27 0.22 -1.60 16 24 H 0.06 1.42 7.45 -2.39 -0.02 1.40 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.00 0.05 6.43 -2.39 -0.02 0.04 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.34 12.37 6.47 -89.69 -0.58 11.79 16 33 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 34 H 0.01 0.39 8.06 -2.39 -0.02 0.37 16 35 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 36 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -62.00 345.97 2.89 -59.11 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.43 Total: 18.34 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 3.33 Total: -41.44 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.82 Total: -80.78 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -62.00 2.89 -59.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.854 kcal (2) G-P(sol) polarization free energy of solvation -62.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds