Wall clock time and date at job start Tue Mar 31 2020 05:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46616 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47104 * 119.99966 * 10 8 6 13 13 H 1.48489 * 109.47200 * 240.00246 * 10 8 6 14 14 N 1.46898 * 109.47328 * 239.99829 * 2 1 3 15 15 C 1.46900 * 110.99928 * 85.00050 * 14 2 1 16 16 H 1.09002 * 109.47194 * 325.00051 * 15 14 2 17 17 C 1.52999 * 109.47427 * 85.00015 * 15 14 2 18 18 C 1.50696 * 109.46806 * 205.00170 * 15 14 2 19 19 C 1.38235 * 120.01278 * 339.72150 * 18 15 14 20 20 C 1.38223 * 120.01748 * 179.79456 * 19 18 15 21 21 C 1.38258 * 120.02176 * 0.46189 * 20 19 18 22 22 C 1.38189 * 120.01973 * 359.79317 * 21 20 19 23 23 C 1.38335 * 120.00608 * 160.00094 * 18 15 14 24 24 Cl 1.73606 * 120.01181 * 359.97438 * 23 18 15 25 25 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 26 26 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 27 27 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 29 29 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 33 33 H 1.00893 * 111.00068 * 208.95192 * 14 2 1 34 34 H 1.08996 * 109.46957 * 59.99424 * 17 15 14 35 35 H 1.08997 * 109.47442 * 179.97438 * 17 15 14 36 36 H 1.09005 * 109.46656 * 299.99908 * 17 15 14 37 37 H 1.08002 * 119.98382 * 0.02562 * 19 18 15 38 38 H 1.07993 * 119.98181 * 180.24978 * 20 19 18 39 39 H 1.08003 * 119.98710 * 179.76424 * 21 20 19 40 40 H 1.08000 * 120.01244 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5440 7 1 3.3688 -1.8051 3.2127 8 6 5.4185 -1.3612 2.8152 9 7 6.2690 -0.7757 2.0006 10 14 6.0412 -2.2417 4.3405 11 1 4.8912 -2.8130 5.0863 12 1 6.9628 -3.3349 3.9394 13 1 6.7646 -1.2777 5.2079 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2226 -2.3468 16 1 1.2577 0.9329 -2.2907 17 6 3.4112 0.9809 -2.3224 18 6 1.9787 -0.5677 -3.6257 19 6 2.2657 -1.9200 -3.6282 20 6 2.1664 -2.6458 -4.8003 21 6 1.7892 -2.0179 -5.9729 22 6 1.5072 -0.6651 -5.9730 23 6 1.6018 0.0611 -4.7989 24 17 1.2476 1.7606 -4.7981 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -0.2616 2.1370 29 1 1.7517 -1.7715 1.2057 30 1 3.9995 -1.0727 0.4261 31 1 3.8532 0.4370 1.3574 32 1 7.2197 -0.8022 2.1912 33 1 2.9174 -1.1204 -1.0287 34 1 4.2360 0.2706 -2.3784 35 1 3.4580 1.6595 -3.1740 36 1 3.4862 1.5525 -1.3972 37 1 2.5639 -2.4101 -2.7132 38 1 2.3868 -3.7030 -4.8007 39 1 1.7155 -2.5849 -6.8892 40 1 1.2122 -0.1749 -6.8889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:04 Heat of formation + Delta-G solvation = -4.852928 kcal Electronic energy + Delta-G solvation = -19796.579542 eV Core-core repulsion = 16829.003874 eV Total energy + Delta-G solvation = -2967.575667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.65264 -37.40101 -36.43140 -34.11527 -32.63553 -30.72966 -30.03894 -29.24202 -27.76549 -25.12784 -23.59641 -22.63103 -21.46305 -20.40843 -19.54260 -17.16347 -16.35421 -15.89776 -15.51920 -14.92932 -14.54957 -14.38255 -13.78719 -13.67732 -13.60728 -13.09200 -12.81029 -12.50383 -12.35330 -12.08930 -11.71541 -11.54718 -11.53462 -11.42716 -11.27784 -11.16967 -10.93833 -10.91044 -10.54633 -10.44749 -10.24417 -9.77622 -9.28187 -9.03521 -8.84551 -8.65303 -8.37464 -8.01644 -6.02313 -4.04220 1.16773 1.31608 2.14136 3.29726 3.37608 3.41774 3.65666 4.39075 4.44729 4.76721 4.90666 5.00957 5.27086 5.33608 5.36742 5.40810 5.49472 5.59017 5.67780 5.76500 5.82655 5.93284 6.00093 6.06635 6.20224 6.24257 6.36564 6.40054 6.44816 6.47529 6.53845 6.62269 6.84007 6.91095 7.07171 7.48727 7.60680 7.78326 7.86584 7.97687 8.41077 9.02779 9.60260 11.08812 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.003965 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.392919 B = 7060.575241 C = 7403.159112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.680 5.680 15 C 0.119 3.881 16 H 0.089 0.911 17 C -0.176 4.176 18 C -0.052 4.052 19 C -0.083 4.083 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.037 4.037 24 Cl -0.076 7.076 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.353 0.647 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 1.040 -15.620 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.314 5.314 15 C 0.008 3.992 16 H 0.107 0.893 17 C -0.235 4.235 18 C -0.054 4.054 19 C -0.101 4.101 20 C -0.136 4.136 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.064 4.064 24 Cl -0.047 7.047 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.176 0.824 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.300 0.974 -15.782 18.871 hybrid contribution 1.247 0.250 0.976 1.603 sum -9.053 1.223 -14.806 17.397 Atomic orbital electron populations 1.21805 0.95755 1.01729 1.00169 1.21598 0.94411 0.96303 0.90280 0.94182 1.21829 0.99673 0.99438 0.94287 1.19124 0.88738 0.96860 0.96873 1.21278 0.91936 1.34112 1.08354 0.92647 1.25015 0.97100 0.95608 0.96661 1.69969 1.02306 1.44165 1.37030 0.86563 0.78864 0.79483 0.83269 1.19735 1.21034 1.21076 1.60704 1.34668 1.31853 1.04208 1.20443 0.97954 0.92532 0.88234 0.89303 1.22443 0.97385 1.01119 1.02564 1.19811 0.97553 0.94513 0.93490 1.21123 0.97562 0.92732 0.98671 1.21299 0.99322 1.00296 0.92678 1.21041 1.00300 0.93876 0.98528 1.20932 1.01555 0.94345 0.96620 1.20783 1.05313 0.85037 0.95238 1.98350 1.93421 1.14213 1.98734 0.93013 0.93820 0.92378 0.92716 0.92464 0.96682 0.96945 0.93108 0.82414 0.91926 0.92219 0.91570 0.84114 0.85597 0.85605 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.40 37.16 0.35 -1.66 16 2 C 0.08 1.41 2.46 -67.71 -0.17 1.24 16 3 H 0.04 0.71 7.11 -51.93 -0.37 0.34 16 4 C -0.11 -2.29 4.74 -26.73 -0.13 -2.42 16 5 C 0.02 0.52 4.80 -27.89 -0.13 0.39 16 6 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 7 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 10 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.68 -10.93 4.90 -100.95 -0.49 -11.43 16 15 C 0.12 1.73 2.06 -68.87 -0.14 1.59 16 16 H 0.09 1.31 6.33 -51.93 -0.33 0.98 16 17 C -0.18 -2.65 9.08 37.16 0.34 -2.31 16 18 C -0.05 -0.72 5.09 -104.59 -0.53 -1.25 16 19 C -0.08 -1.08 9.33 -39.59 -0.37 -1.45 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.20 10.04 -39.59 -0.40 -1.60 16 22 C -0.12 -1.26 9.83 -39.55 -0.39 -1.65 16 23 C -0.04 -0.47 6.31 -39.49 -0.25 -0.71 16 24 Cl -0.08 -0.92 26.63 -51.86 -1.38 -2.30 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.60 7.43 -51.93 -0.39 0.22 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.38 6.43 -51.93 -0.33 0.05 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.35 6.26 5.74 -39.30 -0.23 6.03 16 34 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 35 H 0.06 0.82 7.26 -51.93 -0.38 0.44 16 36 H 0.07 1.07 7.43 -51.93 -0.39 0.68 16 37 H 0.14 1.91 6.84 -52.49 -0.36 1.56 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -28.83 337.06 -9.82 -38.65 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.11 Total: 3.97 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.63 Total: -24.75 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.24 Total: -37.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.38 Total: -2.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.83 -9.82 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.795 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds