Wall clock time and date at job start Tue Mar 31 2020 05:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46616 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47104 * 119.99966 * 10 8 6 13 13 H 1.48489 * 109.47200 * 240.00246 * 10 8 6 14 14 N 1.46898 * 109.47328 * 239.99829 * 2 1 3 15 15 C 1.46900 * 110.99928 * 85.00050 * 14 2 1 16 16 H 1.09002 * 109.47194 * 325.00051 * 15 14 2 17 17 C 1.52999 * 109.47427 * 85.00015 * 15 14 2 18 18 C 1.50696 * 109.46806 * 205.00170 * 15 14 2 19 19 C 1.38235 * 120.01278 * 339.72150 * 18 15 14 20 20 C 1.38223 * 120.01748 * 179.79456 * 19 18 15 21 21 C 1.38258 * 120.02176 * 0.46189 * 20 19 18 22 22 C 1.38189 * 120.01973 * 359.79317 * 21 20 19 23 23 C 1.38335 * 120.00608 * 160.00094 * 18 15 14 24 24 Cl 1.73606 * 120.01181 * 359.97438 * 23 18 15 25 25 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 26 26 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 27 27 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 29 29 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 33 33 H 1.00893 * 111.00068 * 208.95192 * 14 2 1 34 34 H 1.08996 * 109.46957 * 59.99424 * 17 15 14 35 35 H 1.08997 * 109.47442 * 179.97438 * 17 15 14 36 36 H 1.09005 * 109.46656 * 299.99908 * 17 15 14 37 37 H 1.08002 * 119.98382 * 0.02562 * 19 18 15 38 38 H 1.07993 * 119.98181 * 180.24978 * 20 19 18 39 39 H 1.08003 * 119.98710 * 179.76424 * 21 20 19 40 40 H 1.08000 * 120.01244 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5440 7 1 3.3688 -1.8051 3.2127 8 6 5.4185 -1.3612 2.8152 9 7 6.2690 -0.7757 2.0006 10 14 6.0412 -2.2417 4.3405 11 1 4.8912 -2.8130 5.0863 12 1 6.9628 -3.3349 3.9394 13 1 6.7646 -1.2777 5.2079 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2226 -2.3468 16 1 1.2577 0.9329 -2.2907 17 6 3.4112 0.9809 -2.3224 18 6 1.9787 -0.5677 -3.6257 19 6 2.2657 -1.9200 -3.6282 20 6 2.1664 -2.6458 -4.8003 21 6 1.7892 -2.0179 -5.9729 22 6 1.5072 -0.6651 -5.9730 23 6 1.6018 0.0611 -4.7989 24 17 1.2476 1.7606 -4.7981 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -0.2616 2.1370 29 1 1.7517 -1.7715 1.2057 30 1 3.9995 -1.0727 0.4261 31 1 3.8532 0.4370 1.3574 32 1 7.2197 -0.8022 2.1912 33 1 2.9174 -1.1204 -1.0287 34 1 4.2360 0.2706 -2.3784 35 1 3.4580 1.6595 -3.1740 36 1 3.4862 1.5525 -1.3972 37 1 2.5639 -2.4101 -2.7132 38 1 2.3868 -3.7030 -4.8007 39 1 1.7155 -2.5849 -6.8892 40 1 1.2122 -0.1749 -6.8889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:04 Heat of formation + Delta-G solvation = -19.097380 kcal Electronic energy + Delta-G solvation = -19797.197227 eV Core-core repulsion = 16829.003874 eV Total energy + Delta-G solvation = -2968.193353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64902 -38.69622 -37.36077 -35.73252 -34.40991 -31.63738 -31.57026 -30.55682 -29.01530 -27.02555 -24.71003 -23.64017 -23.14276 -21.55111 -21.00134 -18.56592 -18.00689 -17.10327 -16.60846 -16.51217 -16.08894 -15.56905 -14.94448 -14.74275 -14.63326 -14.47744 -14.30536 -14.21352 -13.80644 -13.26062 -13.15293 -13.07349 -12.86135 -12.62146 -12.56485 -12.40491 -12.36644 -12.28739 -12.03904 -11.89590 -11.61271 -11.44280 -11.26696 -10.93180 -10.54015 -9.76685 -9.60814 -9.31865 -8.19428 -6.29468 0.25807 0.40992 1.20768 1.39290 1.40274 1.52974 2.41219 2.74551 3.13052 3.17529 3.73957 3.95318 4.06866 4.15044 4.22860 4.28032 4.35963 4.44646 4.47615 4.55411 4.67846 4.76401 4.81063 4.84679 5.00336 5.03714 5.06715 5.10248 5.17374 5.23845 5.34560 5.44763 5.51547 5.54396 5.58952 5.74321 5.85948 5.95600 6.22596 6.27376 6.41781 6.87320 7.39710 8.91903 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.003965 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.392919 B = 7060.575241 C = 7403.159112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.088 3.912 3 H 0.030 0.970 4 C -0.101 4.101 5 C 0.030 3.970 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.280 1.280 14 N -0.676 5.676 15 C 0.125 3.875 16 H 0.090 0.910 17 C -0.169 4.169 18 C -0.071 4.071 19 C -0.101 4.101 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.048 4.048 24 Cl -0.076 7.076 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.000 1.000 31 H -0.017 1.017 32 H 0.262 0.738 33 H 0.341 0.659 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.160 0.840 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 0.108 -16.565 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.022 4.022 3 H 0.048 0.952 4 C -0.139 4.139 5 C -0.008 4.008 6 C -0.579 4.579 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.206 1.206 14 N -0.309 5.309 15 C 0.015 3.985 16 H 0.107 0.893 17 C -0.228 4.228 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.075 4.075 24 Cl -0.047 7.047 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.018 0.982 31 H 0.002 0.998 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.178 0.822 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.374 0.046 -16.731 20.232 hybrid contribution 1.587 0.541 1.199 2.061 sum -9.787 0.587 -15.533 18.368 Atomic orbital electron populations 1.21717 0.93371 1.02163 1.01291 1.21524 0.96153 0.95208 0.89283 0.95200 1.21637 0.96233 0.99886 0.96114 1.18981 0.91974 0.94413 0.95393 1.21719 0.92473 1.34352 1.09328 0.92451 1.25903 0.97380 0.96332 0.99868 1.70095 1.02671 1.45405 1.38932 0.85470 0.78418 0.78300 0.79300 1.18706 1.20393 1.20593 1.60783 1.33755 1.32054 1.04284 1.20378 0.97330 0.92374 0.88402 0.89252 1.22363 0.97485 1.00836 1.02112 1.19716 0.99407 0.94835 0.93281 1.21140 0.98680 0.92830 0.99277 1.21577 0.98554 1.01310 0.92216 1.21443 0.98379 0.93704 0.99339 1.21274 1.00654 0.94780 0.96721 1.20921 1.05789 0.85251 0.95544 1.98346 1.93430 1.14212 1.98737 0.91830 0.92766 0.92238 0.92511 0.92479 0.98158 0.99834 0.92917 0.83798 0.93356 0.90956 0.93331 0.85483 0.83510 0.82238 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.40 71.98 0.68 -2.92 16 2 C 0.09 3.00 2.46 44.92 0.11 3.11 16 3 H 0.03 1.08 7.11 -2.39 -0.02 1.07 16 4 C -0.10 -4.10 4.74 30.59 0.15 -3.96 16 5 C 0.03 1.52 4.80 29.85 0.14 1.66 16 6 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 8 C 0.00 0.17 5.46 84.65 0.46 0.63 16 9 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 10 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 11 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 N -0.68 -22.32 4.90 -473.30 -2.32 -24.64 16 15 C 0.13 3.73 2.06 44.17 0.09 3.82 16 16 H 0.09 2.63 6.33 -2.39 -0.02 2.61 16 17 C -0.17 -5.32 9.08 71.98 0.65 -4.66 16 18 C -0.07 -1.93 5.09 -19.84 -0.10 -2.03 16 19 C -0.10 -2.62 9.33 22.27 0.21 -2.42 16 20 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 21 C -0.11 -1.89 10.04 22.26 0.22 -1.67 16 22 C -0.12 -2.23 9.83 22.29 0.22 -2.01 16 23 C -0.05 -1.16 6.31 22.33 0.14 -1.02 16 24 Cl -0.08 -1.75 26.63 -2.72 -0.07 -1.83 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.42 7.43 -2.39 -0.02 1.40 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 30 H 0.00 0.01 6.43 -2.39 -0.02 0.00 16 31 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.34 12.74 5.74 -89.70 -0.51 12.22 16 34 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 35 H 0.07 2.04 7.26 -2.39 -0.02 2.02 16 36 H 0.05 1.66 7.43 -2.38 -0.02 1.64 16 37 H 0.13 3.58 6.84 -2.91 -0.02 3.56 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -62.26 337.06 3.85 -58.41 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.51 Total: 21.61 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 3.43 Total: -43.97 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.04 Total: -80.49 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.83 kcal Total: -62.26 3.85 -58.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.310 kcal (2) G-P(sol) polarization free energy of solvation -62.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds