Wall clock time and date at job start Tue Mar 31 2020 05:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47482 * 2 1 4 4 C 1.53003 * 109.47322 * 239.99229 * 2 1 3 5 5 C 1.52996 * 109.47282 * 175.00316 * 4 2 1 6 6 C 1.50692 * 109.47347 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00006 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00570 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00591 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 119.99449 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46851 * 89.99791 * 10 8 6 12 12 H 1.48493 * 109.46881 * 209.99305 * 10 8 6 13 13 H 1.48492 * 109.47250 * 329.99801 * 10 8 6 14 14 N 1.46904 * 109.47041 * 119.99741 * 2 1 3 15 15 C 1.46900 * 110.99814 * 275.00308 * 14 2 1 16 16 H 1.09003 * 109.47663 * 34.99246 * 15 14 2 17 17 C 1.53006 * 109.47001 * 274.99732 * 15 14 2 18 18 C 1.50698 * 109.47224 * 154.99854 * 15 14 2 19 19 C 1.38236 * 120.00583 * 24.99953 * 18 15 14 20 20 C 1.38219 * 120.01155 * 180.02562 * 19 18 15 21 21 C 1.38265 * 120.02927 * 359.97187 * 20 19 18 22 22 C 1.38196 * 120.01248 * 0.02562 * 21 20 19 23 23 C 1.38334 * 120.00545 * 205.01596 * 18 15 14 24 24 Cl 1.73595 * 120.01408 * 0.02562 * 23 18 15 25 25 H 1.08996 * 109.47482 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46917 * 300.00622 * 1 2 3 27 27 H 1.09005 * 109.46716 * 60.00539 * 1 2 3 28 28 H 1.09000 * 109.47251 * 295.00511 * 4 2 1 29 29 H 1.09005 * 109.46417 * 55.00405 * 4 2 1 30 30 H 1.09000 * 109.47137 * 300.00265 * 5 4 2 31 31 H 1.09000 * 109.47200 * 59.99912 * 5 4 2 32 32 H 0.96994 * 119.99900 * 180.02562 * 9 8 6 33 33 H 1.00899 * 111.00269 * 151.04331 * 14 2 1 34 34 H 1.09001 * 109.47183 * 59.99627 * 17 15 14 35 35 H 1.09000 * 109.47364 * 180.02562 * 17 15 14 36 36 H 1.09008 * 109.46936 * 300.00076 * 17 15 14 37 37 H 1.08001 * 119.99548 * 359.97438 * 19 18 15 38 38 H 1.07998 * 119.98921 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99413 * 179.74837 * 21 20 19 40 40 H 1.08002 * 120.00620 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 6 4.0672 -1.3235 -2.5442 7 1 3.3687 -1.8033 -3.2137 8 6 5.4184 -1.3597 -2.8161 9 7 5.8568 -1.9798 -3.8898 10 14 6.6265 -0.5291 -1.6584 11 1 7.0620 -1.4971 -0.6197 12 1 7.8083 -0.0632 -2.4273 13 1 5.9696 0.6329 -1.0078 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2227 2.3469 16 1 1.2576 0.9331 2.2906 17 6 3.4111 0.9810 2.3224 18 6 1.9785 -0.5674 3.6259 19 6 2.3587 -1.8962 3.6505 20 6 2.2629 -2.6212 4.8234 21 6 1.7874 -2.0177 5.9729 22 6 1.4070 -0.6894 5.9496 23 6 1.5022 0.0368 4.7756 24 17 1.0235 1.7052 4.7453 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.7517 -1.7717 -1.2054 29 1 1.6054 -0.2619 -2.1369 30 1 3.8533 0.4367 -1.3573 31 1 3.9994 -1.0729 -0.4258 32 1 6.8074 -2.0055 -4.0808 33 1 2.9173 -1.1205 1.0289 34 1 3.4863 1.5525 1.3973 35 1 3.4578 1.6597 3.1740 36 1 4.2359 0.2706 2.3787 37 1 2.7299 -2.3683 2.7528 38 1 2.5597 -3.6594 4.8420 39 1 1.7090 -2.5858 6.8881 40 1 1.0360 -0.2180 6.8477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480277.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:07 Heat of formation + Delta-G solvation = -1.405482 kcal Electronic energy + Delta-G solvation = -19897.998087 eV Core-core repulsion = 16930.571912 eV Total energy + Delta-G solvation = -2967.426175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75775 -37.54956 -36.52086 -34.23759 -32.62236 -30.81610 -30.35378 -29.53962 -27.91475 -25.34493 -23.72636 -22.72140 -21.21992 -20.49645 -19.65261 -17.31483 -16.72920 -16.02714 -15.63090 -15.07103 -14.58719 -14.30201 -13.88664 -13.80079 -13.64337 -13.24920 -13.06549 -12.68348 -12.45707 -12.28772 -11.90218 -11.77699 -11.64890 -11.54099 -11.43574 -11.33679 -11.07688 -10.96039 -10.64294 -10.50565 -9.98334 -9.79538 -9.46386 -9.20438 -8.94110 -8.74794 -8.56695 -8.16314 -6.06592 -4.04464 1.07804 1.22154 2.05219 3.26486 3.34949 3.36809 3.56100 4.26489 4.41799 4.66312 4.79561 4.91581 5.15157 5.24142 5.25888 5.27724 5.37516 5.45656 5.55681 5.63972 5.69119 5.80134 5.87361 5.92230 6.09565 6.13793 6.22271 6.25017 6.30249 6.36669 6.43242 6.48160 6.72120 6.74506 6.83178 7.24854 7.26547 7.48178 7.68921 7.77533 8.52276 8.99270 9.55935 11.07013 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.004494 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.065285 B = 6229.506166 C = 6555.781353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.040 0.960 4 C -0.106 4.106 5 C -0.014 4.014 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.877 3.123 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.267 1.267 14 N -0.680 5.680 15 C 0.117 3.883 16 H 0.092 0.908 17 C -0.178 4.178 18 C -0.053 4.053 19 C -0.084 4.084 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.036 4.036 24 Cl -0.075 7.075 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.012 0.988 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.350 0.650 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 3.878 20.122 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.058 0.942 4 C -0.144 4.144 5 C -0.051 4.051 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.705 3.295 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.191 1.191 14 N -0.314 5.314 15 C 0.007 3.993 16 H 0.110 0.890 17 C -0.237 4.237 18 C -0.054 4.054 19 C -0.102 4.102 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.063 4.063 24 Cl -0.047 7.047 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.172 0.828 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.650 3.734 20.156 22.657 hybrid contribution 1.532 1.051 0.335 1.888 sum -8.118 4.785 20.491 22.554 Atomic orbital electron populations 1.21792 0.95379 1.01956 1.00324 1.21652 0.94849 0.96199 0.90130 0.94153 1.21660 0.98010 1.00114 0.94586 1.19599 0.91938 0.96517 0.97050 1.21128 0.92900 1.34228 1.07391 0.90986 1.25033 0.98401 0.94920 0.95059 1.69911 1.14596 1.43416 1.26281 0.86819 0.80935 0.80485 0.81283 1.20275 1.21401 1.19137 1.60698 1.34380 1.31998 1.04279 1.20484 0.97958 0.92605 0.88282 0.88998 1.22470 0.97511 1.01118 1.02626 1.19768 0.97397 0.94690 0.93584 1.21083 0.97940 0.92770 0.98418 1.21301 0.99132 1.00295 0.92750 1.21060 0.99649 0.94177 0.98723 1.20950 1.01310 0.94507 0.96590 1.20782 1.04193 0.85868 0.95478 1.98352 1.90505 1.17147 1.98649 0.92197 0.93734 0.92820 0.91829 0.92026 0.96965 0.97386 0.92748 0.82809 0.91652 0.92023 0.92133 0.84337 0.85515 0.85510 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.40 37.16 0.35 -1.56 16 2 C 0.08 1.29 2.46 -67.71 -0.17 1.12 16 3 H 0.04 0.66 7.11 -51.93 -0.37 0.29 16 4 C -0.11 -2.03 4.74 -26.73 -0.13 -2.16 16 5 C -0.01 -0.31 3.87 -27.89 -0.11 -0.42 16 6 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 7 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 10 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 N -0.68 -10.25 5.06 -100.95 -0.51 -10.76 16 15 C 0.12 1.59 2.12 -68.86 -0.15 1.44 16 16 H 0.09 1.26 6.09 -51.93 -0.32 0.94 16 17 C -0.18 -2.43 9.13 37.16 0.34 -2.09 16 18 C -0.05 -0.68 5.06 -104.59 -0.53 -1.21 16 19 C -0.08 -1.03 9.32 -39.59 -0.37 -1.40 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 22 C -0.11 -1.18 9.83 -39.55 -0.39 -1.57 16 23 C -0.04 -0.43 6.31 -39.49 -0.25 -0.68 16 24 Cl -0.08 -0.85 27.17 -51.86 -1.41 -2.26 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 31 H 0.01 0.18 5.85 -51.93 -0.30 -0.12 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.35 5.66 5.64 -39.29 -0.22 5.44 16 34 H 0.06 0.94 7.43 -51.93 -0.39 0.55 16 35 H 0.06 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.06 0.84 8.13 -51.92 -0.42 0.42 16 37 H 0.14 1.74 6.89 -52.49 -0.36 1.38 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -29.73 334.60 -9.49 -39.23 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.10 Total: 3.61 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.62 Total: -24.71 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.26 Total: -37.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.41 Total: -2.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.73 -9.49 -39.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480277.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.820 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds