Wall clock time and date at job start Tue Mar 31 2020 05:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47482 * 2 1 4 4 C 1.53003 * 109.47322 * 239.99229 * 2 1 3 5 5 C 1.52996 * 109.47282 * 175.00316 * 4 2 1 6 6 C 1.50692 * 109.47347 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00006 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00570 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00591 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 119.99449 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46851 * 89.99791 * 10 8 6 12 12 H 1.48493 * 109.46881 * 209.99305 * 10 8 6 13 13 H 1.48492 * 109.47250 * 329.99801 * 10 8 6 14 14 N 1.46904 * 109.47041 * 119.99741 * 2 1 3 15 15 C 1.46900 * 110.99814 * 275.00308 * 14 2 1 16 16 H 1.09003 * 109.47663 * 34.99246 * 15 14 2 17 17 C 1.53006 * 109.47001 * 274.99732 * 15 14 2 18 18 C 1.50698 * 109.47224 * 154.99854 * 15 14 2 19 19 C 1.38236 * 120.00583 * 24.99953 * 18 15 14 20 20 C 1.38219 * 120.01155 * 180.02562 * 19 18 15 21 21 C 1.38265 * 120.02927 * 359.97187 * 20 19 18 22 22 C 1.38196 * 120.01248 * 0.02562 * 21 20 19 23 23 C 1.38334 * 120.00545 * 205.01596 * 18 15 14 24 24 Cl 1.73595 * 120.01408 * 0.02562 * 23 18 15 25 25 H 1.08996 * 109.47482 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46917 * 300.00622 * 1 2 3 27 27 H 1.09005 * 109.46716 * 60.00539 * 1 2 3 28 28 H 1.09000 * 109.47251 * 295.00511 * 4 2 1 29 29 H 1.09005 * 109.46417 * 55.00405 * 4 2 1 30 30 H 1.09000 * 109.47137 * 300.00265 * 5 4 2 31 31 H 1.09000 * 109.47200 * 59.99912 * 5 4 2 32 32 H 0.96994 * 119.99900 * 180.02562 * 9 8 6 33 33 H 1.00899 * 111.00269 * 151.04331 * 14 2 1 34 34 H 1.09001 * 109.47183 * 59.99627 * 17 15 14 35 35 H 1.09000 * 109.47364 * 180.02562 * 17 15 14 36 36 H 1.09008 * 109.46936 * 300.00076 * 17 15 14 37 37 H 1.08001 * 119.99548 * 359.97438 * 19 18 15 38 38 H 1.07998 * 119.98921 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99413 * 179.74837 * 21 20 19 40 40 H 1.08002 * 120.00620 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 6 4.0672 -1.3235 -2.5442 7 1 3.3687 -1.8033 -3.2137 8 6 5.4184 -1.3597 -2.8161 9 7 5.8568 -1.9798 -3.8898 10 14 6.6265 -0.5291 -1.6584 11 1 7.0620 -1.4971 -0.6197 12 1 7.8083 -0.0632 -2.4273 13 1 5.9696 0.6329 -1.0078 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2227 2.3469 16 1 1.2576 0.9331 2.2906 17 6 3.4111 0.9810 2.3224 18 6 1.9785 -0.5674 3.6259 19 6 2.3587 -1.8962 3.6505 20 6 2.2629 -2.6212 4.8234 21 6 1.7874 -2.0177 5.9729 22 6 1.4070 -0.6894 5.9496 23 6 1.5022 0.0368 4.7756 24 17 1.0235 1.7052 4.7453 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.7517 -1.7717 -1.2054 29 1 1.6054 -0.2619 -2.1369 30 1 3.8533 0.4367 -1.3573 31 1 3.9994 -1.0729 -0.4258 32 1 6.8074 -2.0055 -4.0808 33 1 2.9173 -1.1205 1.0289 34 1 3.4863 1.5525 1.3973 35 1 3.4578 1.6597 3.1740 36 1 4.2359 0.2706 2.3787 37 1 2.7299 -2.3683 2.7528 38 1 2.5597 -3.6594 4.8420 39 1 1.7090 -2.5858 6.8881 40 1 1.0360 -0.2180 6.8477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480277.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:06 Heat of formation + Delta-G solvation = -17.242650 kcal Electronic energy + Delta-G solvation = -19898.684838 eV Core-core repulsion = 16930.571912 eV Total energy + Delta-G solvation = -2968.112926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65947 -38.74279 -37.36412 -35.73657 -34.44047 -31.96535 -31.62648 -30.63921 -29.02866 -27.14436 -24.71109 -23.60399 -22.87132 -21.56650 -21.04039 -18.98368 -18.04032 -17.12563 -16.60494 -16.42793 -16.03845 -15.63016 -15.01857 -14.83225 -14.64127 -14.59849 -14.50076 -14.19759 -13.84039 -13.38675 -13.24763 -13.15422 -12.86685 -12.65857 -12.59092 -12.39823 -12.35056 -12.10675 -11.98136 -11.85875 -11.57909 -11.44786 -11.34224 -11.10489 -10.76467 -9.77558 -9.61196 -9.32791 -8.29877 -6.33475 0.25335 0.40081 1.20522 1.32950 1.35140 1.46055 2.34036 2.73453 3.05190 3.15501 3.73087 3.92349 4.03931 4.14154 4.21692 4.26092 4.32510 4.40734 4.45911 4.54253 4.66754 4.71339 4.79761 4.84214 4.89236 5.00308 5.02994 5.06390 5.12807 5.16416 5.34166 5.41427 5.46444 5.53192 5.56020 5.61801 5.66758 5.94486 6.20544 6.29173 6.42634 6.75070 7.30926 8.87212 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.004494 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.065285 B = 6229.506166 C = 6555.781353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.089 3.911 3 H 0.041 0.959 4 C -0.097 4.097 5 C -0.007 4.007 6 C -0.530 4.530 7 H 0.031 0.969 8 C 0.006 3.994 9 N -0.952 5.952 10 Si 0.947 3.053 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.248 1.248 14 N -0.680 5.680 15 C 0.122 3.878 16 H 0.091 0.909 17 C -0.175 4.175 18 C -0.069 4.069 19 C -0.101 4.101 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.048 4.048 24 Cl -0.076 7.076 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.013 0.987 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.342 0.658 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 4.591 23.169 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 H 0.059 0.941 4 C -0.135 4.135 5 C -0.044 4.044 6 C -0.568 4.568 7 H 0.049 0.951 8 C -0.191 4.191 9 N -0.593 5.593 10 Si 0.770 3.230 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.171 1.171 14 N -0.313 5.313 15 C 0.012 3.988 16 H 0.109 0.891 17 C -0.234 4.234 18 C -0.071 4.071 19 C -0.120 4.120 20 C -0.137 4.137 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.075 4.075 24 Cl -0.047 7.047 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.900 4.454 23.217 25.630 hybrid contribution 1.540 0.758 -0.635 1.830 sum -8.360 5.212 22.582 24.638 Atomic orbital electron populations 1.21726 0.93660 1.02061 1.01340 1.21528 0.96131 0.95552 0.88852 0.94103 1.21517 0.95565 1.00068 0.96370 1.19508 0.94399 0.95607 0.94897 1.21497 0.92594 1.34115 1.08585 0.95094 1.25993 1.00623 0.95651 0.96823 1.70069 1.15242 1.45365 1.28603 0.85707 0.78076 0.80079 0.79104 1.18889 1.21229 1.17126 1.60735 1.33861 1.32375 1.04307 1.20440 0.97825 0.92391 0.88142 0.89093 1.22433 0.97396 1.01039 1.02544 1.19709 0.98884 0.95007 0.93487 1.21127 0.98892 0.92936 0.99022 1.21572 0.98579 1.01168 0.92361 1.21436 0.98018 0.94008 0.99496 1.21271 1.00657 0.94859 0.96694 1.20919 1.04627 0.86099 0.95837 1.98348 1.90514 1.17149 1.98660 0.92549 0.92583 0.91927 0.92764 0.92594 0.96874 0.96188 0.92557 0.83663 0.92588 0.91004 0.92659 0.85364 0.83622 0.82442 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.40 71.98 0.68 -2.77 16 2 C 0.09 2.73 2.46 44.92 0.11 2.84 16 3 H 0.04 1.27 7.11 -2.39 -0.02 1.25 16 4 C -0.10 -3.73 4.74 30.59 0.15 -3.58 16 5 C -0.01 -0.30 3.87 29.84 0.12 -0.19 16 6 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 7 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 8 C 0.01 0.34 5.47 84.66 0.46 0.80 16 9 N -0.95 -60.02 13.96 21.45 0.30 -59.73 16 10 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 14 N -0.68 -19.86 5.06 -473.29 -2.39 -22.25 16 15 C 0.12 3.16 2.12 44.17 0.09 3.25 16 16 H 0.09 2.35 6.09 -2.39 -0.01 2.34 16 17 C -0.18 -4.53 9.13 71.98 0.66 -3.87 16 18 C -0.07 -1.68 5.06 -19.84 -0.10 -1.78 16 19 C -0.10 -2.36 9.32 22.26 0.21 -2.15 16 20 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 21 C -0.11 -1.74 10.05 22.27 0.22 -1.52 16 22 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 23 C -0.05 -1.04 6.31 22.33 0.14 -0.90 16 24 Cl -0.08 -1.57 27.17 -2.72 -0.07 -1.65 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.36 7.43 -2.39 -0.02 1.34 16 27 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 31 H 0.02 0.87 5.85 -2.39 -0.01 0.86 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.34 10.84 5.64 -89.69 -0.51 10.33 16 34 H 0.06 1.53 7.43 -2.39 -0.02 1.51 16 35 H 0.07 1.67 7.91 -2.39 -0.02 1.65 16 36 H 0.05 1.47 8.13 -2.38 -0.02 1.45 16 37 H 0.13 3.17 6.89 -2.91 -0.02 3.15 16 38 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -64.75 334.60 3.60 -61.15 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.46 Total: 20.41 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 3.42 Total: -43.92 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -2.10 Total: -81.98 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.65 kcal Total: -64.75 3.60 -61.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480277.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.907 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds