Wall clock time and date at job start Tue Mar 31 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47429 * 2 1 4 4 C 1.52998 * 109.47013 * 239.99710 * 2 1 3 5 5 C 1.53002 * 109.47096 * 63.08467 * 4 2 1 6 6 C 1.50695 * 109.47055 * 174.92621 * 5 4 2 7 7 H 1.08002 * 120.00055 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00285 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00440 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99706 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47044 * 90.00077 * 10 8 6 12 12 H 1.48498 * 109.47135 * 210.00037 * 10 8 6 13 13 H 1.48494 * 109.47055 * 330.00111 * 10 8 6 14 14 N 1.46900 * 109.46994 * 119.99734 * 2 1 3 15 15 C 1.46901 * 111.00183 * 174.75354 * 14 2 1 16 16 C 1.46901 * 111.00184 * 298.70901 * 14 2 1 17 17 C 1.50702 * 109.47205 * 170.00342 * 16 14 2 18 18 C 1.38238 * 119.99040 * 89.99763 * 17 16 14 19 19 C 1.38212 * 120.01573 * 180.27419 * 18 17 16 20 20 C 1.38359 * 119.98099 * 359.47585 * 19 18 17 21 21 Cl 1.73598 * 120.00986 * 180.23231 * 20 19 18 22 22 C 1.38349 * 119.97396 * 0.54337 * 20 19 18 23 23 C 1.38212 * 119.98937 * 359.71138 * 22 20 19 24 24 H 1.09003 * 109.46957 * 300.00401 * 1 2 3 25 25 H 1.08997 * 109.46987 * 60.00039 * 1 2 3 26 26 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47200 * 183.08444 * 4 2 1 28 28 H 1.09001 * 109.46932 * 303.08455 * 4 2 1 29 29 H 1.09003 * 109.46834 * 294.92290 * 5 4 2 30 30 H 1.08994 * 109.47165 * 54.92579 * 5 4 2 31 31 H 0.96998 * 119.99970 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47394 * 177.36455 * 15 14 2 33 33 H 1.09009 * 109.46676 * 297.36141 * 15 14 2 34 34 H 1.09001 * 109.47282 * 57.35432 * 15 14 2 35 35 H 1.08996 * 109.47027 * 49.99834 * 16 14 2 36 36 H 1.09003 * 109.46788 * 289.99698 * 16 14 2 37 37 H 1.08004 * 119.99373 * 359.97438 * 18 17 16 38 38 H 1.07993 * 120.00924 * 179.70139 * 19 18 17 39 39 H 1.08006 * 120.00254 * 179.68456 * 22 20 19 40 40 H 1.07994 * 119.99648 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5943 0.0433 -2.4973 6 6 2.1997 -0.5954 -3.7205 7 1 2.8387 -1.4600 -3.6181 8 6 1.9386 -0.0755 -4.9705 9 7 2.4665 -0.6333 -6.0382 10 14 0.8338 1.4203 -5.1478 11 1 1.6569 2.6544 -5.0793 12 1 0.1320 1.3653 -6.4553 13 1 -0.1656 1.4304 -4.0496 14 7 2.0196 -0.6924 1.1995 15 6 3.4827 -0.8216 1.1725 16 6 1.5740 -0.0087 2.4209 17 6 1.8802 -0.8700 3.6190 18 6 3.0940 -0.7442 4.2684 19 6 3.3776 -1.5379 5.3638 20 6 2.4420 -2.4509 5.8169 21 17 2.7951 -3.4439 7.1964 22 6 1.2275 -2.5766 5.1663 23 6 0.9471 -1.7861 4.0678 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1286 -0.7695 -1.2220 28 1 1.6321 -1.7318 -1.2772 29 1 0.5072 0.0141 -2.5724 30 1 1.9259 1.0792 -2.4265 31 1 2.2831 -0.2672 -6.9175 32 1 3.8227 -1.2958 2.0931 33 1 3.7778 -1.4322 0.3189 34 1 3.9332 0.1670 1.0850 35 1 0.5001 0.1694 2.3663 36 1 2.0960 0.9436 2.5152 37 1 3.8229 -0.0290 3.9168 38 1 4.3279 -1.4429 5.8681 39 1 0.4988 -3.2927 5.5166 40 1 -0.0007 -1.8844 3.5596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:47 Heat of formation + Delta-G solvation = 10.200477 kcal Electronic energy + Delta-G solvation = -19300.806355 eV Core-core repulsion = 16333.883453 eV Total energy + Delta-G solvation = -2966.922903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.86275 -38.01901 -36.65748 -34.07707 -32.34703 -31.35395 -30.87856 -29.43677 -27.14999 -25.07896 -24.09229 -22.99895 -21.68460 -20.65891 -19.27911 -17.32223 -16.80703 -16.01351 -15.65865 -15.43465 -14.85574 -14.43357 -14.08036 -13.91492 -13.70443 -13.56243 -13.19124 -12.73581 -12.51428 -12.32230 -12.09518 -11.75098 -11.65118 -11.59502 -11.30530 -11.24816 -11.06055 -10.98368 -10.77735 -10.40726 -9.97936 -9.67202 -9.55245 -9.24506 -9.12434 -8.80619 -8.52753 -8.14508 -6.03439 -4.01029 0.89988 1.07431 1.89352 3.29985 3.34602 3.37641 3.40641 4.18382 4.45297 4.51982 4.62319 4.67274 5.00014 5.10191 5.27120 5.30030 5.33382 5.39089 5.42717 5.52748 5.67824 5.73336 5.76709 5.80553 5.97643 5.99913 6.12969 6.15177 6.22755 6.36277 6.47200 6.53617 6.57069 6.59939 6.90857 7.21652 7.27275 7.35888 7.47081 7.81589 8.55757 9.02198 9.59205 11.10193 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042782 B = 0.002832 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.320044 B = 9885.908100 C =10088.239582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 H 0.036 0.964 4 C -0.096 4.096 5 C -0.012 4.012 6 C -0.518 4.518 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.265 1.265 14 N -0.531 5.531 15 C 0.017 3.983 16 C 0.083 3.917 17 C -0.063 4.063 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.038 4.038 21 Cl -0.078 7.078 22 C -0.111 4.111 23 C -0.086 4.086 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 -0.208 25.257 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.134 4.134 5 C -0.050 4.050 6 C -0.556 4.556 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.544 5.544 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.190 1.190 14 N -0.255 5.255 15 C -0.131 4.131 16 C -0.044 4.044 17 C -0.064 4.064 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.065 4.065 21 Cl -0.050 7.050 22 C -0.130 4.130 23 C -0.105 4.105 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.799 -0.749 25.167 25.242 hybrid contribution -0.045 1.465 -0.141 1.472 sum -1.844 0.716 25.026 25.104 Atomic orbital electron populations 1.21927 0.94756 1.02445 1.01105 1.21856 0.95527 0.95575 0.89921 0.94574 1.21586 1.00117 0.99508 0.92160 1.19604 0.96636 0.95274 0.93480 1.21153 1.29995 1.14893 0.89573 0.91092 1.25040 0.95676 0.96959 0.95908 1.69919 1.44979 1.41215 0.98275 0.86780 0.81495 0.83530 0.77482 1.20417 1.21428 1.18987 1.62098 1.11264 1.51184 1.00961 1.22529 0.87394 1.00283 1.02936 1.21169 1.01814 0.93653 0.87764 1.19946 0.93831 0.96792 0.95809 1.21063 0.96704 0.99360 0.95023 1.20998 0.99037 0.95685 0.97340 1.20920 0.96503 0.96835 0.92259 1.98365 1.95029 1.69146 1.42419 1.21057 0.95623 1.00267 0.96050 1.21024 0.99939 0.94445 0.95099 0.93665 0.91460 0.91861 0.92515 0.92020 0.96312 0.97429 0.92787 0.91700 0.90255 0.95808 0.89268 0.94075 0.85327 0.85134 0.85046 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.74 37.16 0.32 -1.77 16 2 C 0.08 1.24 2.17 -67.71 -0.15 1.09 16 3 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.10 -1.87 4.34 -26.73 -0.12 -1.99 16 5 C -0.01 -0.29 3.62 -27.88 -0.10 -0.39 16 6 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 10 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 14 N -0.53 -7.29 4.62 -236.33 -1.09 -8.38 16 15 C 0.02 0.22 8.71 60.06 0.52 0.74 16 16 C 0.08 0.93 4.95 -4.97 -0.02 0.91 16 17 C -0.06 -0.66 4.90 -104.62 -0.51 -1.17 16 18 C -0.10 -0.99 7.88 -39.59 -0.31 -1.30 16 19 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 20 C -0.04 -0.38 6.32 -39.50 -0.25 -0.63 16 21 Cl -0.08 -0.72 28.96 -51.86 -1.50 -2.22 16 22 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 23 C -0.09 -0.86 9.70 -39.59 -0.38 -1.24 16 24 H 0.04 0.54 6.23 -51.93 -0.32 0.22 16 25 H 0.07 1.05 6.62 -51.93 -0.34 0.71 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.12 6.21 -51.93 -0.32 0.80 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.02 0.44 5.83 -51.93 -0.30 0.13 16 30 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.06 0.76 5.70 -51.93 -0.30 0.47 16 33 H 0.08 1.15 6.31 -51.92 -0.33 0.83 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.94 5.82 -51.93 -0.30 0.64 16 36 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 37 H 0.13 1.08 7.93 -52.48 -0.42 0.66 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -30.33 331.20 -9.70 -40.03 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.99 Total: -2.24 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.21 Total: -21.92 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.32 Total: -35.65 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.33 -9.70 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.227 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds