Wall clock time and date at job start Tue Mar 31 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47429 * 2 1 4 4 C 1.52998 * 109.47013 * 239.99710 * 2 1 3 5 5 C 1.53002 * 109.47096 * 63.08467 * 4 2 1 6 6 C 1.50695 * 109.47055 * 174.92621 * 5 4 2 7 7 H 1.08002 * 120.00055 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00285 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00440 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99706 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47044 * 90.00077 * 10 8 6 12 12 H 1.48498 * 109.47135 * 210.00037 * 10 8 6 13 13 H 1.48494 * 109.47055 * 330.00111 * 10 8 6 14 14 N 1.46900 * 109.46994 * 119.99734 * 2 1 3 15 15 C 1.46901 * 111.00183 * 174.75354 * 14 2 1 16 16 C 1.46901 * 111.00184 * 298.70901 * 14 2 1 17 17 C 1.50702 * 109.47205 * 170.00342 * 16 14 2 18 18 C 1.38238 * 119.99040 * 89.99763 * 17 16 14 19 19 C 1.38212 * 120.01573 * 180.27419 * 18 17 16 20 20 C 1.38359 * 119.98099 * 359.47585 * 19 18 17 21 21 Cl 1.73598 * 120.00986 * 180.23231 * 20 19 18 22 22 C 1.38349 * 119.97396 * 0.54337 * 20 19 18 23 23 C 1.38212 * 119.98937 * 359.71138 * 22 20 19 24 24 H 1.09003 * 109.46957 * 300.00401 * 1 2 3 25 25 H 1.08997 * 109.46987 * 60.00039 * 1 2 3 26 26 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47200 * 183.08444 * 4 2 1 28 28 H 1.09001 * 109.46932 * 303.08455 * 4 2 1 29 29 H 1.09003 * 109.46834 * 294.92290 * 5 4 2 30 30 H 1.08994 * 109.47165 * 54.92579 * 5 4 2 31 31 H 0.96998 * 119.99970 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47394 * 177.36455 * 15 14 2 33 33 H 1.09009 * 109.46676 * 297.36141 * 15 14 2 34 34 H 1.09001 * 109.47282 * 57.35432 * 15 14 2 35 35 H 1.08996 * 109.47027 * 49.99834 * 16 14 2 36 36 H 1.09003 * 109.46788 * 289.99698 * 16 14 2 37 37 H 1.08004 * 119.99373 * 359.97438 * 18 17 16 38 38 H 1.07993 * 120.00924 * 179.70139 * 19 18 17 39 39 H 1.08006 * 120.00254 * 179.68456 * 22 20 19 40 40 H 1.07994 * 119.99648 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5943 0.0433 -2.4973 6 6 2.1997 -0.5954 -3.7205 7 1 2.8387 -1.4600 -3.6181 8 6 1.9386 -0.0755 -4.9705 9 7 2.4665 -0.6333 -6.0382 10 14 0.8338 1.4203 -5.1478 11 1 1.6569 2.6544 -5.0793 12 1 0.1320 1.3653 -6.4553 13 1 -0.1656 1.4304 -4.0496 14 7 2.0196 -0.6924 1.1995 15 6 3.4827 -0.8216 1.1725 16 6 1.5740 -0.0087 2.4209 17 6 1.8802 -0.8700 3.6190 18 6 3.0940 -0.7442 4.2684 19 6 3.3776 -1.5379 5.3638 20 6 2.4420 -2.4509 5.8169 21 17 2.7951 -3.4439 7.1964 22 6 1.2275 -2.5766 5.1663 23 6 0.9471 -1.7861 4.0678 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1286 -0.7695 -1.2220 28 1 1.6321 -1.7318 -1.2772 29 1 0.5072 0.0141 -2.5724 30 1 1.9259 1.0792 -2.4265 31 1 2.2831 -0.2672 -6.9175 32 1 3.8227 -1.2958 2.0931 33 1 3.7778 -1.4322 0.3189 34 1 3.9332 0.1670 1.0850 35 1 0.5001 0.1694 2.3663 36 1 2.0960 0.9436 2.5152 37 1 3.8229 -0.0290 3.9168 38 1 4.3279 -1.4429 5.8681 39 1 0.4988 -3.2927 5.5166 40 1 -0.0007 -1.8844 3.5596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:47 Heat of formation + Delta-G solvation = -6.627460 kcal Electronic energy + Delta-G solvation = -19301.536070 eV Core-core repulsion = 16333.883453 eV Total energy + Delta-G solvation = -2967.652617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66605 -39.09444 -37.41660 -35.71745 -34.09079 -32.10425 -31.97961 -30.84277 -28.35679 -26.56213 -25.22733 -23.72152 -23.09170 -21.80550 -20.66387 -18.92711 -18.02694 -17.07442 -16.52480 -16.46481 -16.07029 -15.99640 -15.44417 -15.01539 -14.70913 -14.43660 -14.31418 -14.10712 -14.03393 -13.68432 -13.13999 -13.06639 -12.90363 -12.52827 -12.45757 -12.38639 -12.23482 -12.13449 -11.85088 -11.75702 -11.66942 -11.46550 -11.34469 -11.03977 -10.74154 -9.95464 -9.59053 -9.19097 -8.28161 -6.32154 0.15165 0.36673 1.17514 1.36382 1.38678 1.50790 2.37349 2.56486 3.07262 3.17278 3.79200 3.84147 3.98982 4.03435 4.12925 4.27105 4.37468 4.46196 4.50672 4.57770 4.70049 4.71967 4.76936 4.82062 4.89685 4.96965 5.01693 5.04760 5.13006 5.18160 5.26254 5.28919 5.39832 5.54030 5.61674 5.65251 5.69020 5.85679 6.14494 6.20059 6.32324 6.76482 7.32260 8.88989 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042782 B = 0.002832 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.320044 B = 9885.908100 C =10088.239582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.038 0.962 4 C -0.088 4.088 5 C -0.006 4.006 6 C -0.532 4.532 7 H 0.027 0.973 8 C 0.000 4.000 9 N -0.954 5.954 10 Si 0.952 3.048 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.241 1.241 14 N -0.538 5.538 15 C 0.019 3.981 16 C 0.087 3.913 17 C -0.074 4.074 18 C -0.106 4.106 19 C -0.116 4.116 20 C -0.048 4.048 21 Cl -0.077 7.077 22 C -0.116 4.116 23 C -0.092 4.092 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.266 0.734 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 1.395 27.203 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.056 0.944 4 C -0.126 4.126 5 C -0.044 4.044 6 C -0.570 4.570 7 H 0.045 0.955 8 C -0.196 4.196 9 N -0.595 5.595 10 Si 0.775 3.225 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.164 1.164 14 N -0.262 5.262 15 C -0.129 4.129 16 C -0.040 4.040 17 C -0.075 4.075 18 C -0.124 4.124 19 C -0.135 4.135 20 C -0.075 4.075 21 Cl -0.048 7.048 22 C -0.135 4.135 23 C -0.111 4.111 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.095 0.847 27.146 27.335 hybrid contribution 0.450 0.847 -0.703 1.189 sum -2.645 1.694 26.443 26.629 Atomic orbital electron populations 1.21893 0.93452 1.02536 1.02043 1.21627 0.96476 0.94944 0.88993 0.94395 1.21410 0.99478 0.98766 0.92915 1.19525 0.96566 0.95495 0.92843 1.21531 1.29503 1.13886 0.92055 0.95491 1.26077 0.97464 1.00704 0.95338 1.70085 1.46981 1.43429 0.99048 0.85624 0.79706 0.78940 0.78189 1.19236 1.21112 1.16439 1.62031 1.11408 1.51527 1.01248 1.22489 0.87402 1.00282 1.02752 1.21194 1.02386 0.93840 0.86585 1.19953 0.94431 0.97223 0.95863 1.21222 0.96705 0.99525 0.94974 1.21201 0.99575 0.95368 0.97317 1.21100 0.96850 0.97057 0.92463 1.98365 1.95021 1.69096 1.42297 1.21245 0.95883 1.00445 0.95932 1.21189 1.00337 0.94314 0.95248 0.90669 0.92568 0.92222 0.93584 0.93414 0.95548 0.96667 0.92566 0.90218 0.92403 0.95340 0.88314 0.93279 0.84180 0.83753 0.83788 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.74 71.98 0.63 -3.10 16 2 C 0.09 2.60 2.17 44.91 0.10 2.70 16 3 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.09 -3.43 4.34 30.59 0.13 -3.30 16 5 C -0.01 -0.30 3.62 29.85 0.11 -0.19 16 6 C -0.53 -31.10 9.66 25.60 0.25 -30.86 16 7 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 8 C 0.00 0.02 5.47 84.65 0.46 0.49 16 9 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 10 Si 0.95 44.17 27.47 68.60 1.88 46.06 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.24 -10.18 6.54 99.48 0.65 -9.52 16 14 N -0.54 -13.80 4.62 -901.61 -4.17 -17.96 16 15 C 0.02 0.47 8.71 127.69 1.11 1.59 16 16 C 0.09 1.71 4.95 85.56 0.42 2.13 16 17 C -0.07 -1.37 4.90 -19.86 -0.10 -1.47 16 18 C -0.11 -1.79 7.88 22.26 0.18 -1.62 16 19 C -0.12 -1.94 9.83 22.29 0.22 -1.72 16 20 C -0.05 -0.86 6.32 22.33 0.14 -0.72 16 21 Cl -0.08 -1.30 28.96 -2.72 -0.08 -1.38 16 22 C -0.12 -2.00 9.83 22.29 0.22 -1.78 16 23 C -0.09 -1.63 9.70 22.26 0.22 -1.42 16 24 H 0.07 1.52 6.23 -2.39 -0.01 1.51 16 25 H 0.06 1.60 6.62 -2.39 -0.02 1.59 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.86 6.21 -2.39 -0.01 1.85 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.03 1.19 5.83 -2.39 -0.01 1.17 16 30 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.08 1.76 5.70 -2.39 -0.01 1.74 16 33 H 0.06 1.70 6.31 -2.38 -0.02 1.68 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 1.74 5.82 -2.39 -0.01 1.73 16 36 H 0.05 0.91 8.06 -2.39 -0.02 0.89 16 37 H 0.14 2.00 7.93 -2.91 -0.02 1.97 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -66.18 331.20 2.99 -63.20 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.96 Total: 9.80 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 4.09 Total: -39.27 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -3.87 Total: -78.40 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -66.18 2.99 -63.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.569 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds