Wall clock time and date at job start Tue Mar 31 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 C 1.52998 * 109.46689 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46735 * 179.97438 * 4 3 2 6 6 C 1.37101 * 119.99847 * 265.55644 * 5 4 3 7 7 H 1.07997 * 119.99397 * 145.67063 * 6 5 4 8 8 C 1.38944 * 120.00095 * 325.67312 * 6 5 4 9 9 N 1.31408 * 120.00383 * 338.40977 * 8 6 5 10 10 Si 1.86802 * 119.99568 * 158.41303 * 8 6 5 11 11 H 1.48498 * 109.47604 * 60.00231 * 10 8 6 12 12 H 1.48508 * 109.47058 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47471 * 299.99634 * 10 8 6 14 14 C 1.34780 * 120.00171 * 85.56211 * 5 4 3 15 15 O 1.21300 * 119.99519 * 359.97438 * 14 5 4 16 16 C 1.50690 * 120.00084 * 179.97438 * 14 5 4 17 17 C 1.50697 * 109.47229 * 179.97438 * 16 14 5 18 18 N 1.31787 * 119.09200 * 269.73618 * 17 16 14 19 19 C 1.32323 * 120.84680 * 179.71618 * 18 17 16 20 20 C 1.38822 * 119.06995 * 0.54292 * 19 18 17 21 21 F 1.35098 * 120.82996 * 179.71347 * 20 19 18 22 22 C 1.38827 * 118.34752 * 359.72685 * 20 19 18 23 23 N 1.31786 * 119.09324 * 90.00053 * 17 16 14 24 24 H 1.08993 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46870 * 300.00471 * 1 2 3 26 26 H 1.09004 * 109.47005 * 59.99835 * 1 2 3 27 27 H 1.09000 * 109.46929 * 240.00075 * 2 1 3 28 28 H 1.09004 * 109.47005 * 120.00165 * 2 1 3 29 29 H 1.09000 * 109.47132 * 60.00199 * 3 2 1 30 30 H 1.08996 * 109.46996 * 300.00103 * 3 2 1 31 31 H 1.09000 * 109.47227 * 60.00188 * 4 3 2 32 32 H 1.08996 * 109.47429 * 299.99768 * 4 3 2 33 33 H 0.97002 * 120.00104 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47000 * 60.00231 * 16 14 5 35 35 H 1.09000 * 109.47249 * 299.99911 * 16 14 5 36 36 H 1.07995 * 120.46681 * 180.29923 * 19 18 17 37 37 H 1.07995 * 120.46285 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.3731 3.4389 -1.1854 7 1 4.1962 4.4972 -1.3076 8 6 4.9197 2.7008 -2.2280 9 7 5.5226 1.5599 -1.9800 10 14 4.7974 3.3306 -3.9824 11 1 5.4732 4.6490 -4.0835 12 1 5.4543 2.3665 -4.9013 13 1 3.3679 3.4770 -4.3574 14 6 4.1984 3.4895 1.1622 15 8 3.9196 2.9452 2.2097 16 6 4.7013 4.9100 1.1616 17 6 4.7650 5.4210 2.5778 18 7 3.7115 6.0260 3.0887 19 6 3.7275 6.4832 4.3304 20 6 4.8780 6.3278 5.0916 21 9 4.9353 6.7862 6.3612 22 6 5.9683 5.6900 4.5157 23 7 5.8744 5.2551 3.2696 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 5.9038 1.0445 -2.7079 34 1 4.0234 5.5351 0.5804 35 1 5.6964 4.9430 0.7180 36 1 2.8591 6.9738 4.7445 37 1 6.8806 5.5512 5.0768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177401884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:03 Heat of formation + Delta-G solvation = -40.863041 kcal Electronic energy + Delta-G solvation = -21737.238479 eV Core-core repulsion = 18236.224578 eV Total energy + Delta-G solvation = -3501.013902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.03716 -40.85920 -38.53792 -35.39820 -33.95251 -33.72846 -32.51167 -31.53603 -29.15276 -27.57089 -24.93375 -24.84852 -23.50509 -22.14552 -20.42195 -19.18031 -18.19402 -17.58465 -17.20877 -16.43744 -15.93461 -15.78536 -14.82313 -14.63595 -14.49758 -14.35519 -13.93840 -13.74770 -13.16751 -13.10482 -12.92199 -12.48260 -12.22893 -11.99813 -11.49078 -11.38304 -11.27798 -11.22375 -10.88258 -10.83359 -10.58993 -10.49025 -10.34894 -10.22447 -9.72328 -9.23644 -9.10031 -9.07174 -8.46433 -7.56636 -6.41803 -4.10372 0.81327 1.06201 3.09986 3.19368 3.21170 3.67537 3.84918 3.86928 4.04591 4.11805 4.22484 4.63951 4.75349 4.82450 4.97775 5.50114 5.50697 5.53022 5.55976 5.67843 6.06958 6.12520 6.16402 6.24429 6.26135 6.39989 6.43059 6.50691 6.62030 6.74541 6.86154 6.98966 7.13346 7.33362 7.47977 7.87622 8.17555 8.32184 9.02089 9.44907 9.89050 10.58904 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.004962 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.689174 B = 5640.988163 C = 6850.629190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.115 3.885 5 N -0.433 5.433 6 C -0.346 4.346 7 H 0.092 0.908 8 C 0.046 3.954 9 N -0.855 5.855 10 Si 0.914 3.086 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.480 3.520 15 O -0.604 6.604 16 C -0.060 4.060 17 C 0.355 3.645 18 N -0.486 5.486 19 C 0.129 3.871 20 C -0.028 4.028 21 F -0.127 7.127 22 C 0.130 3.870 23 N -0.482 5.482 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.175 0.825 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 5.633 5.746 8.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.008 4.008 5 N -0.150 5.150 6 C -0.474 4.474 7 H 0.109 0.891 8 C -0.160 4.160 9 N -0.491 5.491 10 Si 0.740 3.260 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.197 1.197 14 C 0.268 3.732 15 O -0.490 6.490 16 C -0.102 4.102 17 C 0.089 3.911 18 N -0.198 5.198 19 C -0.040 4.040 20 C -0.052 4.052 21 F -0.106 7.106 22 C -0.039 4.039 23 N -0.195 5.195 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.193 0.807 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.737 4.863 5.199 7.627 hybrid contribution 0.046 0.664 0.250 0.711 sum -2.691 5.527 5.448 8.215 Atomic orbital electron populations 1.21756 0.96654 1.00645 1.01484 1.21426 0.94965 0.97765 1.01563 1.21905 0.97898 0.95486 1.01380 1.21456 0.91094 0.84588 1.03657 1.43390 1.55040 1.12075 1.04485 1.19425 1.42336 0.95537 0.90053 0.89065 1.25323 0.94022 0.96278 1.00417 1.69923 1.31167 1.14849 1.33113 0.86212 0.78814 0.78842 0.82119 1.19628 1.20894 1.19739 1.19795 0.81825 0.87475 0.84122 1.90550 1.56467 1.70275 1.31746 1.20307 1.05517 0.96745 0.87609 1.22927 0.83320 0.88077 0.96764 1.68311 1.29272 1.10450 1.11801 1.23380 0.96405 0.94590 0.89608 1.19535 0.98987 1.04496 0.82223 1.91508 1.96824 1.86874 1.35418 1.23413 0.97700 0.91179 0.91599 1.68328 1.27869 1.16995 1.06275 0.93445 0.93111 0.93019 0.92244 0.92468 0.92889 0.92293 0.87365 0.93072 0.91853 0.87310 0.86455 0.80748 0.80701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.63 5.51 -26.73 -0.15 -2.77 16 4 C 0.12 2.74 4.92 -4.04 -0.02 2.72 16 5 N -0.43 -10.71 2.55 -114.81 -0.29 -11.00 16 6 C -0.35 -8.42 8.70 -14.93 -0.13 -8.55 16 7 H 0.09 2.08 6.98 -52.49 -0.37 1.71 16 8 C 0.05 1.12 4.94 -17.47 -0.09 1.03 16 9 N -0.85 -21.88 11.31 55.50 0.63 -21.25 16 10 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.48 11.70 7.60 -10.99 -0.08 11.62 16 15 O -0.60 -16.19 15.69 5.54 0.09 -16.10 16 16 C -0.06 -1.23 4.80 -29.04 -0.14 -1.37 16 17 C 0.36 6.86 6.13 -157.21 -0.96 5.89 16 18 N -0.49 -8.66 10.33 -10.68 -0.11 -8.77 16 19 C 0.13 1.83 11.30 -17.12 -0.19 1.64 16 20 C -0.03 -0.39 7.39 -39.15 -0.29 -0.68 16 21 F -0.13 -1.57 17.30 2.25 0.04 -1.53 16 22 C 0.13 1.88 11.30 -17.12 -0.19 1.69 16 23 N -0.48 -8.83 10.33 -10.68 -0.11 -8.94 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 32 H 0.05 1.28 7.56 -51.93 -0.39 0.89 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.11 2.02 7.65 -51.93 -0.40 1.62 16 35 H 0.12 2.32 8.10 -51.93 -0.42 1.90 16 36 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -29.64 323.91 -6.74 -36.38 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.79 Total: 5.37 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.04 Total: 7.28 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.11 Total: -49.96 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.64 -6.74 -36.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177401884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.483 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds