Wall clock time and date at job start Tue Mar 31 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 C 1.52998 * 109.46689 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46735 * 179.97438 * 4 3 2 6 6 C 1.37101 * 119.99847 * 265.55644 * 5 4 3 7 7 H 1.07997 * 119.99397 * 145.67063 * 6 5 4 8 8 C 1.38944 * 120.00095 * 325.67312 * 6 5 4 9 9 N 1.31408 * 120.00383 * 338.40977 * 8 6 5 10 10 Si 1.86802 * 119.99568 * 158.41303 * 8 6 5 11 11 H 1.48498 * 109.47604 * 60.00231 * 10 8 6 12 12 H 1.48508 * 109.47058 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47471 * 299.99634 * 10 8 6 14 14 C 1.34780 * 120.00171 * 85.56211 * 5 4 3 15 15 O 1.21300 * 119.99519 * 359.97438 * 14 5 4 16 16 C 1.50690 * 120.00084 * 179.97438 * 14 5 4 17 17 C 1.50697 * 109.47229 * 179.97438 * 16 14 5 18 18 N 1.31787 * 119.09200 * 269.73618 * 17 16 14 19 19 C 1.32323 * 120.84680 * 179.71618 * 18 17 16 20 20 C 1.38822 * 119.06995 * 0.54292 * 19 18 17 21 21 F 1.35098 * 120.82996 * 179.71347 * 20 19 18 22 22 C 1.38827 * 118.34752 * 359.72685 * 20 19 18 23 23 N 1.31786 * 119.09324 * 90.00053 * 17 16 14 24 24 H 1.08993 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46870 * 300.00471 * 1 2 3 26 26 H 1.09004 * 109.47005 * 59.99835 * 1 2 3 27 27 H 1.09000 * 109.46929 * 240.00075 * 2 1 3 28 28 H 1.09004 * 109.47005 * 120.00165 * 2 1 3 29 29 H 1.09000 * 109.47132 * 60.00199 * 3 2 1 30 30 H 1.08996 * 109.46996 * 300.00103 * 3 2 1 31 31 H 1.09000 * 109.47227 * 60.00188 * 4 3 2 32 32 H 1.08996 * 109.47429 * 299.99768 * 4 3 2 33 33 H 0.97002 * 120.00104 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47000 * 60.00231 * 16 14 5 35 35 H 1.09000 * 109.47249 * 299.99911 * 16 14 5 36 36 H 1.07995 * 120.46681 * 180.29923 * 19 18 17 37 37 H 1.07995 * 120.46285 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.3731 3.4389 -1.1854 7 1 4.1962 4.4972 -1.3076 8 6 4.9197 2.7008 -2.2280 9 7 5.5226 1.5599 -1.9800 10 14 4.7974 3.3306 -3.9824 11 1 5.4732 4.6490 -4.0835 12 1 5.4543 2.3665 -4.9013 13 1 3.3679 3.4770 -4.3574 14 6 4.1984 3.4895 1.1622 15 8 3.9196 2.9452 2.2097 16 6 4.7013 4.9100 1.1616 17 6 4.7650 5.4210 2.5778 18 7 3.7115 6.0260 3.0887 19 6 3.7275 6.4832 4.3304 20 6 4.8780 6.3278 5.0916 21 9 4.9353 6.7862 6.3612 22 6 5.9683 5.6900 4.5157 23 7 5.8744 5.2551 3.2696 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 5.9038 1.0445 -2.7079 34 1 4.0234 5.5351 0.5804 35 1 5.6964 4.9430 0.7180 36 1 2.8591 6.9738 4.7445 37 1 6.8806 5.5512 5.0768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177401884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:03 Heat of formation + Delta-G solvation = -58.158470 kcal Electronic energy + Delta-G solvation = -21737.988465 eV Core-core repulsion = 18236.224578 eV Total energy + Delta-G solvation = -3501.763888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.10625 -42.14450 -40.38683 -37.19658 -35.57852 -34.98194 -33.91339 -33.40061 -30.66220 -29.07777 -26.79821 -26.03041 -24.95984 -23.59793 -21.97283 -21.05550 -19.43782 -18.96431 -18.63089 -18.03343 -17.41658 -17.06357 -16.56846 -16.16495 -16.01534 -15.90231 -15.41109 -15.15925 -14.56431 -14.37580 -14.24273 -14.13076 -13.80587 -13.56017 -13.09376 -13.02111 -12.91052 -12.64187 -12.56647 -12.14813 -12.12445 -12.04979 -11.94868 -11.80738 -11.43026 -10.99474 -10.57998 -10.35405 -10.16539 -9.49012 -8.28422 -6.03582 -0.42539 -0.10070 1.46639 1.53514 1.61731 1.99791 2.28132 2.42423 2.71998 2.76064 3.03291 3.08057 3.17836 3.62668 3.63542 4.05716 4.11729 4.15424 4.29963 4.41229 4.43168 4.58896 4.65859 4.75494 4.84571 4.88638 4.99381 5.07022 5.18095 5.24313 5.36247 5.43056 5.47554 5.58751 5.79350 5.99818 6.42887 6.90023 7.12433 7.55350 8.00093 8.73595 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.004962 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.689174 B = 5640.988163 C = 6850.629190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.117 3.883 5 N -0.443 5.443 6 C -0.361 4.361 7 H 0.105 0.895 8 C 0.007 3.993 9 N -0.889 5.889 10 Si 0.983 3.017 11 H -0.261 1.261 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.467 3.533 15 O -0.636 6.636 16 C -0.050 4.050 17 C 0.332 3.668 18 N -0.506 5.506 19 C 0.127 3.873 20 C -0.010 4.010 21 F -0.114 7.114 22 C 0.125 3.875 23 N -0.511 5.511 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.026 0.974 33 H 0.273 0.727 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.214 0.786 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 6.773 5.782 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.007 4.007 5 N -0.160 5.160 6 C -0.488 4.488 7 H 0.123 0.877 8 C -0.197 4.197 9 N -0.526 5.526 10 Si 0.806 3.194 11 H -0.185 1.185 12 H -0.211 1.211 13 H -0.192 1.192 14 C 0.256 3.744 15 O -0.525 6.525 16 C -0.091 4.091 17 C 0.065 3.935 18 N -0.219 5.219 19 C -0.041 4.041 20 C -0.034 4.034 21 F -0.092 7.092 22 C -0.042 4.042 23 N -0.224 5.224 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.230 0.770 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.501 6.021 5.246 8.719 hybrid contribution 0.330 0.323 0.396 0.608 sum -3.171 6.344 5.642 9.063 Atomic orbital electron populations 1.21708 0.94097 1.02360 1.01777 1.21411 0.97165 0.95144 1.01670 1.21763 0.95413 0.97791 1.00331 1.21416 0.93220 0.84385 1.01676 1.43676 1.54987 1.12307 1.05059 1.19827 1.42599 0.96364 0.90046 0.87741 1.26176 0.93184 0.96292 1.04024 1.70030 1.32058 1.16184 1.34313 0.85148 0.78867 0.78455 0.76903 1.18538 1.21077 1.19198 1.20474 0.81347 0.89079 0.83481 1.90502 1.57844 1.71443 1.32736 1.20123 1.05287 0.94270 0.89440 1.22627 0.84446 0.89788 0.96607 1.68270 1.28910 1.11156 1.13569 1.24005 0.97858 0.93724 0.88474 1.19441 0.98430 1.03169 0.82408 1.91553 1.96721 1.86490 1.34461 1.23981 0.99340 0.90315 0.90611 1.68275 1.27930 1.18202 1.07996 0.91029 0.93134 0.92431 0.91847 0.92694 0.94508 0.92465 0.88526 0.95570 0.91715 0.86048 0.86631 0.76955 0.77285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.13 16 2 C -0.12 -3.92 5.93 30.60 0.18 -3.73 16 3 C -0.11 -4.79 5.51 30.59 0.17 -4.62 16 4 C 0.12 5.76 4.92 86.38 0.42 6.18 16 5 N -0.44 -22.60 2.55 -635.54 -1.62 -24.22 16 6 C -0.36 -17.73 8.70 84.04 0.73 -17.00 16 7 H 0.11 4.73 6.98 -2.91 -0.02 4.71 16 8 C 0.01 0.33 4.94 84.93 0.42 0.75 16 9 N -0.89 -46.27 11.31 21.66 0.24 -46.03 16 10 Si 0.98 37.90 29.60 68.60 2.03 39.94 16 11 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 12 H -0.29 -11.00 7.11 99.48 0.71 -10.30 16 13 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 14 C 0.47 23.48 7.60 87.65 0.67 24.15 16 15 O -0.64 -35.35 15.69 -3.09 -0.05 -35.40 16 16 C -0.05 -2.07 4.80 29.10 0.14 -1.93 16 17 C 0.33 12.87 6.13 138.75 0.85 13.72 16 18 N -0.51 -17.69 10.33 -187.69 -1.94 -19.63 16 19 C 0.13 3.35 11.30 84.76 0.96 4.30 16 20 C -0.01 -0.26 7.39 22.55 0.17 -0.10 16 21 F -0.11 -2.44 17.30 44.97 0.78 -1.66 16 22 C 0.12 3.42 11.30 84.76 0.96 4.38 16 23 N -0.51 -18.61 10.33 -187.69 -1.94 -20.55 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.10 5.00 5.34 -2.39 -0.01 4.99 16 32 H 0.03 1.38 7.56 -2.39 -0.02 1.36 16 33 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 34 H 0.12 4.56 7.65 -2.39 -0.02 4.54 16 35 H 0.12 4.71 8.10 -2.39 -0.02 4.69 16 36 H 0.21 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.21 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -65.21 323.91 4.96 -60.25 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 1.08 Total: 24.34 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 6.38 Total: 22.96 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -5.26 Total: -110.42 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.05 Total: -35.40 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.94 kcal Total: -65.21 4.96 -60.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177401884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.090 kcal (2) G-P(sol) polarization free energy of solvation -65.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds