Wall clock time and date at job start Tue Mar 31 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47262 * 2 1 4 4 N 1.46904 * 109.47362 * 181.07234 * 3 2 1 5 5 C 1.46901 * 110.99890 * 299.43320 * 4 3 2 6 6 C 1.50703 * 109.47014 * 294.03667 * 5 4 3 7 7 H 1.08003 * 119.99966 * 355.07438 * 6 5 4 8 8 C 1.37882 * 119.99962 * 175.07819 * 6 5 4 9 9 N 1.31507 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99773 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47412 * 59.99993 * 10 8 6 12 12 H 1.48502 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47456 * 299.99810 * 10 8 6 14 14 C 1.46898 * 110.99596 * 63.37965 * 4 3 2 15 15 C 1.50707 * 109.47075 * 66.05359 * 14 4 3 16 16 C 1.38233 * 119.99753 * 269.72561 * 15 14 4 17 17 C 1.38237 * 120.00239 * 179.76334 * 16 15 14 18 18 C 1.38236 * 119.99447 * 0.50375 * 17 16 15 19 19 C 1.50695 * 119.99810 * 179.72433 * 18 17 16 20 20 Cl 1.80308 * 109.47252 * 270.02317 * 19 18 17 21 21 C 1.38236 * 120.00366 * 359.74841 * 18 17 16 22 22 C 1.38236 * 120.00070 * 89.99273 * 15 14 4 23 23 H 1.09000 * 109.47482 * 300.00378 * 1 2 3 24 24 H 1.09002 * 109.47260 * 60.00047 * 1 2 3 25 25 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47203 * 240.00042 * 2 1 3 27 27 H 1.09003 * 109.46783 * 120.00183 * 2 1 3 28 28 H 1.09007 * 109.47339 * 61.07236 * 3 2 1 29 29 H 1.09001 * 109.47507 * 301.07048 * 3 2 1 30 30 H 1.09003 * 109.47482 * 54.03167 * 5 4 3 31 31 H 1.08996 * 109.47383 * 174.03775 * 5 4 3 32 32 H 0.97005 * 120.00030 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47818 * 306.05223 * 14 4 3 34 34 H 1.09003 * 109.46874 * 186.04272 * 14 4 3 35 35 H 1.08003 * 119.99740 * 359.97438 * 16 15 14 36 36 H 1.07993 * 120.00307 * 180.23209 * 17 16 15 37 37 H 1.09000 * 109.47274 * 30.02476 * 19 18 17 38 38 H 1.09004 * 109.47067 * 150.02535 * 19 18 17 39 39 H 1.08001 * 120.00185 * 179.97438 * 21 18 17 40 40 H 1.08001 * 119.99979 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5088 1.4425 -0.0259 5 6 4.0562 0.7612 1.1548 6 6 3.7176 1.5513 2.3927 7 1 3.2223 2.5070 2.3046 8 6 4.0402 1.0541 3.6376 9 7 4.6429 -0.1098 3.7448 10 14 3.6212 2.0338 5.1718 11 1 2.1527 2.2442 5.2391 12 1 4.0692 1.2862 6.3742 13 1 4.3080 3.3494 5.1220 14 6 4.0134 0.8357 -1.2649 15 6 3.6341 1.7013 -2.4389 16 6 2.4391 1.4852 -3.0993 17 6 2.0889 2.2823 -4.1731 18 6 2.9385 3.2886 -4.5929 19 6 2.5597 4.1535 -5.7674 20 17 3.1795 3.4079 -7.2876 21 6 4.1360 3.5013 -3.9358 22 6 4.4838 2.7076 -2.8587 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 1.6924 1.9508 0.8995 29 1 1.6611 1.9619 -0.8802 30 1 3.6243 -0.2367 1.2314 31 1 5.1391 0.6821 1.0592 32 1 4.8696 -0.4598 4.6206 33 1 3.5768 -0.1553 -1.3882 34 1 5.0988 0.7507 -1.2119 35 1 1.7775 0.6959 -2.7742 36 1 1.1536 2.1159 -4.6867 37 1 1.4743 4.2387 -5.8207 38 1 2.9963 5.1447 -5.6445 39 1 4.8000 4.2873 -4.2641 40 1 5.4196 2.8733 -2.3457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232932169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:26 Heat of formation + Delta-G solvation = 2.004044 kcal Electronic energy + Delta-G solvation = -19702.834625 eV Core-core repulsion = 16735.556299 eV Total energy + Delta-G solvation = -2967.278327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.56019 -37.33650 -36.05205 -33.10878 -32.80970 -31.54533 -30.81967 -28.34066 -26.63784 -25.34899 -23.34286 -22.59228 -22.11738 -20.81199 -19.20614 -16.35280 -16.00141 -15.72324 -15.18113 -15.08960 -14.65583 -14.48552 -14.23550 -13.64480 -13.54134 -13.37089 -13.13041 -12.90439 -12.32292 -12.09644 -11.67228 -11.50871 -11.35628 -11.09473 -10.96974 -10.85677 -10.77568 -10.71358 -10.57474 -10.53691 -10.39152 -9.93739 -9.72837 -9.23785 -8.77130 -8.51659 -8.41203 -7.16793 -6.03254 -4.04230 1.14452 1.53931 2.37419 3.32613 3.36850 3.39801 3.90775 4.42759 4.48170 4.61193 5.02102 5.03509 5.11157 5.19145 5.23525 5.32591 5.49890 5.53248 5.61629 5.65827 5.84357 5.88333 5.97805 6.09359 6.15210 6.21652 6.33868 6.41016 6.48213 6.51535 6.55609 6.73732 6.86842 6.96523 7.09805 7.29902 7.41383 7.79889 8.08068 8.18502 8.53938 9.03521 9.59849 11.07308 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003587 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.008955 B = 7803.481741 C = 8237.012754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.064 3.936 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.081 3.919 15 C -0.045 4.045 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.123 4.123 19 C 0.016 3.984 20 Cl -0.187 7.187 21 C -0.100 4.100 22 C -0.101 4.101 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.004 0.996 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 5.001 -17.043 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.064 4.064 4 N -0.251 5.251 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.047 4.047 15 C -0.046 4.046 16 C -0.134 4.134 17 C -0.120 4.120 18 C -0.124 4.124 19 C -0.046 4.046 20 Cl -0.161 7.161 21 C -0.118 4.118 22 C -0.120 4.120 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.040 5.315 -16.988 18.500 hybrid contribution -0.433 -0.455 0.894 1.092 sum -5.472 4.860 -16.095 17.680 Atomic orbital electron populations 1.21652 0.96508 1.00676 1.01208 1.22182 0.95514 1.00456 1.02154 1.22085 0.88379 0.94407 1.01534 1.62401 1.06648 1.54673 1.01369 1.19805 0.94846 0.92994 0.85956 1.21093 1.38271 1.04993 0.89956 0.92011 1.24964 0.95411 0.95061 0.99080 1.69942 1.41536 1.18262 1.24148 0.86592 0.78739 0.80074 0.82198 1.20311 1.21411 1.20191 1.21126 1.00418 0.94189 0.88960 1.20071 0.93678 0.95692 0.95180 1.21086 0.96643 0.99939 0.95759 1.20903 0.99081 0.95017 0.96954 1.19561 0.96549 0.98956 0.97286 1.23135 1.01548 0.97043 0.82892 1.98731 1.90091 1.86059 1.41174 1.20961 0.95571 0.99446 0.95860 1.21057 1.00148 0.94773 0.96019 0.92719 0.93575 0.93608 0.93125 0.90464 0.90244 0.92681 0.97855 0.95751 0.92907 0.94357 0.90572 0.86050 0.86351 0.88362 0.88303 0.86221 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.16 -2.85 5.20 -26.74 -0.14 -2.99 16 3 C 0.06 1.21 4.81 -3.82 -0.02 1.19 16 4 N -0.53 -10.93 4.69 -237.51 -1.11 -12.05 16 5 C 0.19 4.73 4.49 -4.97 -0.02 4.71 16 6 C -0.50 -13.83 8.40 -34.44 -0.29 -14.12 16 7 H 0.06 1.69 7.29 -52.48 -0.38 1.31 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.08 1.41 4.93 -4.97 -0.02 1.39 16 15 C -0.05 -0.69 4.88 -104.62 -0.51 -1.20 16 16 C -0.12 -1.57 7.92 -39.58 -0.31 -1.88 16 17 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 18 C -0.12 -1.38 5.26 -104.63 -0.55 -1.93 16 19 C 0.02 0.14 6.78 36.00 0.24 0.38 16 20 Cl -0.19 -1.93 29.13 -51.86 -1.51 -3.44 16 21 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 22 C -0.10 -1.43 9.70 -39.58 -0.38 -1.81 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.82 5.72 -51.93 -0.30 0.53 16 27 H 0.08 1.60 6.35 -51.93 -0.33 1.27 16 28 H 0.08 1.66 6.94 -51.92 -0.36 1.30 16 29 H 0.05 0.94 5.95 -51.93 -0.31 0.63 16 30 H 0.00 0.10 6.04 -51.93 -0.31 -0.22 16 31 H 0.02 0.66 7.93 -51.93 -0.41 0.25 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.04 0.66 6.03 -51.93 -0.31 0.35 16 34 H 0.08 1.33 7.88 -51.93 -0.41 0.92 16 35 H 0.12 1.58 7.35 -52.48 -0.39 1.19 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.10 0.70 8.09 -51.93 -0.42 0.29 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -28.98 335.67 -10.38 -39.36 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.02 Total: -0.15 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.50 Total: -19.66 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.38 Total: -37.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -1.51 Total: -3.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.98 -10.38 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232932169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.362 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds