Wall clock time and date at job start Tue Mar 31 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 120.00178 * 2 1 4 4 H 1.08000 * 119.99876 * 203.04767 * 3 2 1 5 5 C 1.38805 * 119.99701 * 23.04207 * 3 2 1 6 6 N 1.31615 * 120.00279 * 12.93571 * 5 3 2 7 7 Si 1.86800 * 119.99919 * 192.93052 * 5 3 2 8 8 H 1.48492 * 109.47140 * 89.99938 * 7 5 3 9 9 H 1.48504 * 109.47285 * 210.00275 * 7 5 3 10 10 H 1.48505 * 109.47177 * 329.99903 * 7 5 3 11 11 C 1.46508 * 119.99795 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47022 * 90.00377 * 11 2 1 13 13 C 1.53002 * 109.46561 * 180.02562 * 12 11 2 14 14 N 1.46507 * 109.46624 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99791 * 179.97438 * 14 13 12 16 16 O 1.21515 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.48156 * 120.00273 * 179.97438 * 15 14 13 18 18 C 1.39900 * 120.90398 * 359.97438 * 17 15 14 19 19 C 1.38042 * 119.06868 * 180.02562 * 18 17 15 20 20 N 1.31884 * 120.93115 * 0.02562 * 19 18 17 21 21 C 1.31963 * 122.01420 * 359.69553 * 20 19 18 22 22 F 1.35102 * 119.58928 * 180.31735 * 21 20 19 23 23 C 1.38522 * 120.82208 * 0.59487 * 21 20 19 24 24 H 1.08999 * 109.47288 * 275.12482 * 1 2 3 25 25 H 1.08995 * 109.47228 * 35.12619 * 1 2 3 26 26 H 1.09000 * 109.46729 * 155.12594 * 1 2 3 27 27 H 0.96998 * 120.00301 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47096 * 329.99640 * 11 2 1 29 29 H 1.09002 * 109.46549 * 210.00110 * 11 2 1 30 30 H 1.08995 * 109.47470 * 60.00052 * 12 11 2 31 31 H 1.08997 * 109.46549 * 299.99349 * 12 11 2 32 32 H 1.08996 * 109.47794 * 59.99993 * 13 12 11 33 33 H 1.09004 * 109.47145 * 299.99308 * 13 12 11 34 34 H 0.96992 * 120.00245 * 359.97438 * 14 13 12 35 35 H 1.08005 * 120.46763 * 359.97438 * 18 17 15 36 36 H 1.07995 * 119.53724 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.50723 * 179.69650 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3400 0.4705 6 7 0.4119 2.2597 1.1458 7 14 2.3159 4.0073 0.1455 8 1 1.7989 4.5532 -1.1350 9 1 1.9759 4.9364 1.2530 10 1 3.7909 3.8577 0.0601 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4417 13 6 3.2169 -3.0365 -1.4410 14 7 3.4606 -3.4603 -2.8221 15 6 4.1230 -4.6080 -3.0678 16 8 4.5185 -5.2910 -2.1439 17 6 4.3691 -5.0370 -4.4644 18 6 3.9217 -4.2656 -5.5424 19 6 4.1712 -4.7014 -6.8282 20 7 4.8208 -5.8279 -7.0481 21 6 5.2650 -6.5833 -6.0615 22 9 5.9304 -7.7249 -6.3429 23 6 5.0526 -6.2233 -4.7409 24 1 -0.3634 0.0918 1.0235 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3633 -0.9324 -0.4323 27 1 -0.0149 3.0662 1.4749 28 1 1.6084 -2.0282 0.5148 29 1 3.1499 -1.1382 0.5144 30 1 3.0416 -0.9517 -1.9558 31 1 1.5001 -1.8417 -1.9554 32 1 2.6275 -3.7957 -0.9270 33 1 4.1694 -2.9063 -0.9271 34 1 3.1453 -2.9149 -3.5596 35 1 3.3879 -3.3424 -5.3710 36 1 3.8289 -4.1120 -7.6659 37 1 5.4142 -6.8479 -3.9373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235259122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:36 Heat of formation + Delta-G solvation = -19.895142 kcal Electronic energy + Delta-G solvation = -20626.749747 eV Core-core repulsion = 17126.645082 eV Total energy + Delta-G solvation = -3500.104665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.41774 -40.93160 -39.29730 -36.40277 -34.99552 -33.42073 -32.09012 -31.34640 -29.99121 -26.39208 -25.82649 -24.53032 -24.05763 -22.10828 -21.17252 -20.31126 -18.77118 -17.78528 -16.94553 -16.74757 -16.52095 -16.20761 -15.84925 -15.66123 -14.95095 -14.64754 -14.37880 -14.15277 -13.85072 -13.54504 -13.38141 -13.01790 -12.76248 -12.62416 -11.82548 -11.54003 -11.12090 -10.87547 -10.85491 -10.63773 -10.52774 -10.50672 -10.26138 -10.08081 -9.89898 -9.86668 -9.56162 -9.22368 -8.59117 -6.79376 -5.76194 -3.23967 0.11849 0.38483 2.47249 2.71955 3.10823 3.24316 3.34700 3.41123 3.42640 4.04419 4.11226 4.30152 4.38226 4.45724 4.90562 5.05736 5.15731 5.19859 5.32613 5.38421 5.41930 5.69437 5.79219 5.97948 6.00653 6.03702 6.32147 6.35560 6.67195 6.69277 6.85789 7.06856 7.22314 7.32668 7.69195 7.76553 7.86865 8.36027 9.19769 9.83125 10.31956 11.28542 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.031719 B = 0.002684 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.548027 B =10430.289092 C =10813.253842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.152 4.152 13 C 0.119 3.881 14 N -0.713 5.713 15 C 0.553 3.447 16 O -0.526 6.526 17 C -0.055 4.055 18 C -0.154 4.154 19 C 0.137 3.863 20 N -0.502 5.502 21 C 0.306 3.694 22 F -0.108 7.108 23 C -0.139 4.139 24 H 0.031 0.969 25 H 0.040 0.960 26 H -0.003 1.003 27 H 0.253 0.747 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 -13.946 -14.226 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.325 5.325 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.027 3.973 12 C -0.193 4.193 13 C -0.005 4.005 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.403 6.403 17 C -0.066 4.066 18 C -0.175 4.175 19 C -0.020 4.020 20 N -0.217 5.217 21 C 0.153 3.847 22 F -0.087 7.087 23 C -0.161 4.161 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.237 0.763 35 H 0.169 0.831 36 H 0.193 0.807 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.040 -14.582 -14.258 21.270 hybrid contribution 0.146 1.302 0.154 1.319 sum 6.186 -13.280 -14.104 20.336 Atomic orbital electron populations 1.20797 0.82640 0.95318 0.99539 1.43900 1.01859 1.00654 1.86127 1.19183 0.98290 0.85602 1.35624 0.91398 1.25043 0.97907 0.98607 0.98122 1.70066 1.19458 1.27241 1.38442 0.86251 0.78762 0.84097 0.77394 1.21511 1.21721 1.20464 1.20589 0.96459 0.88606 0.91668 1.22565 0.99478 0.93968 1.03244 1.21589 1.00877 0.97327 0.80658 1.46062 1.56802 1.22979 1.10568 1.18029 0.78960 0.81698 0.87550 1.90810 1.50615 1.53867 1.45011 1.20335 0.97227 0.94591 0.94437 1.22466 1.00666 1.01272 0.93054 1.22557 0.92465 0.90330 0.96601 1.66906 1.11447 1.06674 1.36653 1.17993 0.93493 0.84244 0.88991 1.91658 1.76949 1.45478 1.94583 1.21959 0.99824 0.97818 0.96489 0.95045 0.94135 0.98398 0.93708 0.94339 0.93197 0.91398 0.92086 0.91261 0.91101 0.76313 0.83121 0.80670 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 8.98 59.85 0.54 4.40 16 2 N -0.60 -14.59 2.92 -181.12 -0.53 -15.12 16 3 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 4 H 0.07 1.76 7.86 -52.49 -0.41 1.34 16 5 C 0.00 0.04 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -26.10 10.71 55.49 0.59 -25.51 16 7 Si 0.90 21.36 29.57 -169.99 -5.03 16.33 16 8 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 C 0.16 2.95 5.64 -4.04 -0.02 2.93 16 12 C -0.15 -2.26 5.65 -26.73 -0.15 -2.41 16 13 C 0.12 1.51 5.67 -4.04 -0.02 1.49 16 14 N -0.71 -7.60 5.51 -61.15 -0.34 -7.94 16 15 C 0.55 6.58 7.80 -12.19 -0.10 6.48 16 16 O -0.53 -8.15 16.44 5.35 0.09 -8.06 16 17 C -0.05 -0.52 5.91 -104.66 -0.62 -1.14 16 18 C -0.15 -1.04 9.61 -39.03 -0.38 -1.42 16 19 C 0.14 0.94 11.17 -17.60 -0.20 0.75 16 20 N -0.50 -4.95 10.35 -13.64 -0.14 -5.09 16 21 C 0.31 3.11 8.41 -17.39 -0.15 2.96 16 22 F -0.11 -1.13 17.29 2.25 0.04 -1.09 16 23 C -0.14 -1.35 9.66 -38.94 -0.38 -1.73 16 24 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 25 H 0.04 1.03 7.34 -51.93 -0.38 0.65 16 26 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.40 3.21 6.61 -40.82 -0.27 2.94 16 35 H 0.15 0.60 6.53 -52.48 -0.34 0.26 16 36 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.16 1.51 7.74 -52.49 -0.41 1.11 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -32.34 323.88 -6.83 -39.17 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.70 Total: -2.83 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.70 Total: 5.27 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.41 Total: -53.66 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.34 -6.83 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235259122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.273 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds