Wall clock time and date at job start Tue Mar 31 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 120.00178 * 2 1 4 4 H 1.08000 * 119.99876 * 203.04767 * 3 2 1 5 5 C 1.38805 * 119.99701 * 23.04207 * 3 2 1 6 6 N 1.31615 * 120.00279 * 12.93571 * 5 3 2 7 7 Si 1.86800 * 119.99919 * 192.93052 * 5 3 2 8 8 H 1.48492 * 109.47140 * 89.99938 * 7 5 3 9 9 H 1.48504 * 109.47285 * 210.00275 * 7 5 3 10 10 H 1.48505 * 109.47177 * 329.99903 * 7 5 3 11 11 C 1.46508 * 119.99795 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47022 * 90.00377 * 11 2 1 13 13 C 1.53002 * 109.46561 * 180.02562 * 12 11 2 14 14 N 1.46507 * 109.46624 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99791 * 179.97438 * 14 13 12 16 16 O 1.21515 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.48156 * 120.00273 * 179.97438 * 15 14 13 18 18 C 1.39900 * 120.90398 * 359.97438 * 17 15 14 19 19 C 1.38042 * 119.06868 * 180.02562 * 18 17 15 20 20 N 1.31884 * 120.93115 * 0.02562 * 19 18 17 21 21 C 1.31963 * 122.01420 * 359.69553 * 20 19 18 22 22 F 1.35102 * 119.58928 * 180.31735 * 21 20 19 23 23 C 1.38522 * 120.82208 * 0.59487 * 21 20 19 24 24 H 1.08999 * 109.47288 * 275.12482 * 1 2 3 25 25 H 1.08995 * 109.47228 * 35.12619 * 1 2 3 26 26 H 1.09000 * 109.46729 * 155.12594 * 1 2 3 27 27 H 0.96998 * 120.00301 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47096 * 329.99640 * 11 2 1 29 29 H 1.09002 * 109.46549 * 210.00110 * 11 2 1 30 30 H 1.08995 * 109.47470 * 60.00052 * 12 11 2 31 31 H 1.08997 * 109.46549 * 299.99349 * 12 11 2 32 32 H 1.08996 * 109.47794 * 59.99993 * 13 12 11 33 33 H 1.09004 * 109.47145 * 299.99308 * 13 12 11 34 34 H 0.96992 * 120.00245 * 359.97438 * 14 13 12 35 35 H 1.08005 * 120.46763 * 359.97438 * 18 17 15 36 36 H 1.07995 * 119.53724 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.50723 * 179.69650 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3400 0.4705 6 7 0.4119 2.2597 1.1458 7 14 2.3159 4.0073 0.1455 8 1 1.7989 4.5532 -1.1350 9 1 1.9759 4.9364 1.2530 10 1 3.7909 3.8577 0.0601 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4417 13 6 3.2169 -3.0365 -1.4410 14 7 3.4606 -3.4603 -2.8221 15 6 4.1230 -4.6080 -3.0678 16 8 4.5185 -5.2910 -2.1439 17 6 4.3691 -5.0370 -4.4644 18 6 3.9217 -4.2656 -5.5424 19 6 4.1712 -4.7014 -6.8282 20 7 4.8208 -5.8279 -7.0481 21 6 5.2650 -6.5833 -6.0615 22 9 5.9304 -7.7249 -6.3429 23 6 5.0526 -6.2233 -4.7409 24 1 -0.3634 0.0918 1.0235 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3633 -0.9324 -0.4323 27 1 -0.0149 3.0662 1.4749 28 1 1.6084 -2.0282 0.5148 29 1 3.1499 -1.1382 0.5144 30 1 3.0416 -0.9517 -1.9558 31 1 1.5001 -1.8417 -1.9554 32 1 2.6275 -3.7957 -0.9270 33 1 4.1694 -2.9063 -0.9271 34 1 3.1453 -2.9149 -3.5596 35 1 3.3879 -3.3424 -5.3710 36 1 3.8289 -4.1120 -7.6659 37 1 5.4142 -6.8479 -3.9373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235259122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:35 Heat of formation + Delta-G solvation = -41.724524 kcal Electronic energy + Delta-G solvation = -20627.696340 eV Core-core repulsion = 17126.645082 eV Total energy + Delta-G solvation = -3501.051258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.16845 -41.69915 -40.16638 -37.95578 -36.31783 -34.31013 -33.58425 -32.15045 -31.44760 -27.96664 -27.44435 -25.64612 -24.72130 -23.51862 -22.25255 -21.68702 -19.62211 -18.71599 -18.49860 -17.64433 -17.27793 -17.08111 -16.95365 -16.73333 -16.50741 -15.68668 -15.48989 -15.17758 -14.93878 -14.71834 -14.65078 -14.42569 -14.18490 -13.39211 -13.25314 -13.02332 -12.78026 -12.63024 -12.47866 -12.26915 -12.06719 -11.82823 -11.56840 -11.45481 -11.26016 -10.85396 -10.61332 -10.22209 -10.17266 -8.75560 -7.80199 -5.29862 -0.59683 -0.24769 1.49359 1.49693 1.58644 1.64072 1.83751 2.43498 2.53549 2.53921 3.30835 3.35234 3.46297 3.65905 3.72579 3.73091 4.14804 4.22831 4.36254 4.44953 4.49658 4.65244 4.67680 4.78195 4.83084 4.89159 4.95485 5.23199 5.31883 5.33741 5.40527 5.54209 5.66717 5.74970 6.34584 6.37378 6.45009 6.99460 7.18142 7.90637 8.33885 9.22843 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.031719 B = 0.002684 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.548027 B =10430.289092 C =10813.253842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.259 4.259 4 H 0.074 0.926 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.968 3.032 8 H -0.285 1.285 9 H -0.299 1.299 10 H -0.268 1.268 11 C 0.148 3.852 12 C -0.129 4.129 13 C 0.129 3.871 14 N -0.701 5.701 15 C 0.556 3.444 16 O -0.569 6.569 17 C -0.067 4.067 18 C -0.133 4.133 19 C 0.142 3.858 20 N -0.520 5.520 21 C 0.290 3.710 22 F -0.117 7.117 23 C -0.145 4.145 24 H 0.001 0.999 25 H 0.015 0.985 26 H 0.035 0.965 27 H 0.247 0.753 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.417 0.583 35 H 0.185 0.815 36 H 0.216 0.784 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -13.554 -16.226 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.390 4.390 4 H 0.092 0.908 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.797 3.203 8 H -0.211 1.211 9 H -0.226 1.226 10 H -0.192 1.192 11 C 0.022 3.978 12 C -0.169 4.169 13 C 0.005 3.995 14 N -0.353 5.353 15 C 0.342 3.658 16 O -0.448 6.448 17 C -0.078 4.078 18 C -0.153 4.153 19 C -0.014 4.014 20 N -0.236 5.236 21 C 0.138 3.862 22 F -0.096 7.096 23 C -0.167 4.167 24 H 0.019 0.981 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.256 0.744 35 H 0.203 0.797 36 H 0.232 0.768 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.290 -14.216 -16.300 22.525 hybrid contribution 0.070 1.139 0.752 1.366 sum 6.360 -13.078 -15.548 21.289 Atomic orbital electron populations 1.20547 0.82859 0.96073 0.97549 1.44166 1.02127 1.01774 1.86376 1.19541 0.98510 0.86679 1.34235 0.90838 1.25818 0.98713 1.02001 0.98652 1.70237 1.20993 1.27542 1.40087 0.85248 0.78466 0.79857 0.76766 1.21145 1.22596 1.19216 1.20790 0.95741 0.86861 0.94423 1.22172 1.00143 0.94659 0.99945 1.21301 1.00171 0.96149 0.81833 1.45834 1.56346 1.22838 1.10244 1.18303 0.78114 0.81279 0.88111 1.90794 1.52381 1.55157 1.46512 1.20174 0.98598 0.95214 0.93782 1.22824 0.98958 1.01495 0.92034 1.23270 0.90890 0.89366 0.97880 1.66965 1.12058 1.07735 1.36803 1.18041 0.94452 0.84513 0.89232 1.91626 1.77301 1.46059 1.94633 1.21910 1.00299 0.98234 0.96283 0.98074 0.96631 0.94674 0.94383 0.93264 0.93845 0.91753 0.91183 0.91340 0.91846 0.74440 0.79732 0.76779 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.27 8.98 127.77 1.15 9.42 16 2 N -0.62 -29.49 2.92 -726.94 -2.12 -31.61 16 3 C -0.26 -13.62 9.65 84.03 0.81 -12.81 16 4 H 0.07 3.70 7.86 -2.91 -0.02 3.68 16 5 C -0.06 -3.12 5.10 84.86 0.43 -2.69 16 6 N -0.94 -54.99 10.71 21.65 0.23 -54.76 16 7 Si 0.97 43.76 29.57 68.60 2.03 45.79 16 8 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 9 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 11 C 0.15 5.40 5.64 86.38 0.49 5.88 16 12 C -0.13 -3.48 5.65 30.59 0.17 -3.31 16 13 C 0.13 3.01 5.67 86.38 0.49 3.50 16 14 N -0.70 -12.97 5.51 -465.66 -2.57 -15.54 16 15 C 0.56 12.29 7.80 86.88 0.68 12.97 16 16 O -0.57 -17.38 16.44 -3.76 -0.06 -17.44 16 17 C -0.07 -1.14 5.91 -19.89 -0.12 -1.25 16 18 C -0.13 -1.30 9.61 22.63 0.22 -1.08 16 19 C 0.14 1.45 11.17 84.64 0.95 2.39 16 20 N -0.52 -9.26 10.35 -197.08 -2.04 -11.30 16 21 C 0.29 5.72 8.41 84.74 0.71 6.43 16 22 F -0.12 -2.50 17.29 44.97 0.78 -1.72 16 23 C -0.15 -2.77 9.66 22.69 0.22 -2.55 16 24 H 0.00 0.05 7.34 -2.39 -0.02 0.03 16 25 H 0.01 0.78 7.34 -2.39 -0.02 0.76 16 26 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 27 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 29 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.42 4.98 6.61 -92.71 -0.61 4.36 16 35 H 0.19 0.49 6.53 -2.91 -0.02 0.47 16 36 H 0.22 0.40 8.06 -2.91 -0.02 0.37 16 37 H 0.16 3.04 7.74 -2.91 -0.02 3.01 16 Total: -1.00 -70.91 323.88 2.92 -67.99 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 0.48 Total: 1.68 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.20 Total: 16.90 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -6.50 Total: -113.21 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.06 Total: -17.44 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.91 2.92 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235259122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.269 kcal (2) G-P(sol) polarization free energy of solvation -70.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds