Wall clock time and date at job start Tue Mar 31 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46923 * 2 1 4 4 N 1.46900 * 109.46914 * 174.89556 * 3 2 1 5 5 C 1.46904 * 111.00313 * 199.75455 * 4 3 2 6 6 C 1.50704 * 109.46791 * 66.04789 * 5 4 3 7 7 H 1.08001 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00341 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99665 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47371 * 60.00648 * 10 8 6 12 12 H 1.48504 * 109.46884 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47532 * 300.00277 * 10 8 6 14 14 C 1.46901 * 111.00105 * 75.80435 * 4 3 2 15 15 C 1.50701 * 109.47559 * 198.84538 * 14 4 3 16 16 C 1.38233 * 120.00704 * 255.31728 * 15 14 4 17 17 C 1.38216 * 120.01504 * 180.25171 * 16 15 14 18 18 C 1.38266 * 120.02312 * 359.76630 * 17 16 15 19 19 C 1.38185 * 120.01508 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00558 * 180.02562 * 19 18 17 21 21 C 1.38329 * 120.00753 * 75.07852 * 15 14 4 22 22 Cl 1.73603 * 120.01227 * 0.02562 * 21 15 14 23 23 H 1.09001 * 109.47104 * 304.97113 * 1 2 3 24 24 H 1.08994 * 109.47603 * 64.97505 * 1 2 3 25 25 H 1.09002 * 109.47223 * 184.97726 * 1 2 3 26 26 H 1.08999 * 109.46973 * 240.00090 * 2 1 3 27 27 H 1.08999 * 109.47105 * 119.99811 * 2 1 3 28 28 H 1.09005 * 109.47304 * 54.90130 * 3 2 1 29 29 H 1.08995 * 109.47166 * 294.89800 * 3 2 1 30 30 H 1.08994 * 109.47318 * 186.04885 * 5 4 3 31 31 H 1.08996 * 109.47105 * 306.04952 * 5 4 3 32 32 H 0.96996 * 120.00311 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46970 * 78.84194 * 14 4 3 34 34 H 1.09006 * 109.46846 * 318.84437 * 14 4 3 35 35 H 1.08002 * 119.99311 * 359.97438 * 16 15 14 36 36 H 1.08002 * 119.98922 * 179.74454 * 17 16 15 37 37 H 1.08006 * 119.98949 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.46631 * 269.97606 * 20 19 18 39 39 H 1.08996 * 109.47065 * 29.97602 * 20 19 18 40 40 H 1.08996 * 109.46707 * 149.98187 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4443 0.1232 5 6 3.9911 2.7489 0.5908 6 6 3.5125 2.9884 1.9996 7 1 2.9072 2.2456 2.4979 8 6 3.8473 4.1557 2.6524 9 7 4.5840 5.0605 2.0455 10 14 3.2534 4.4528 4.3983 11 1 3.7739 3.3830 5.2871 12 1 3.7452 5.7721 4.8706 13 1 1.7688 4.4400 4.4252 14 6 4.1394 1.0694 -1.1469 15 6 5.5587 0.6333 -0.8889 16 6 6.6090 1.4733 -1.2086 17 6 7.9110 1.0714 -0.9769 18 6 8.1635 -0.1690 -0.4207 19 6 7.1142 -1.0074 -0.0958 20 6 7.3897 -2.3592 0.5110 21 6 5.8106 -0.6056 -0.3276 22 17 4.4919 -1.6588 0.0793 23 1 -0.3633 0.5890 0.8421 24 1 -0.3634 0.4347 -0.9311 25 1 -0.3634 -1.0238 0.0892 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6039 1.9821 0.8408 29 1 1.7531 1.9293 -0.9321 30 1 5.0808 2.7581 0.5708 31 1 3.6091 3.5344 -0.0612 32 1 4.8193 5.8819 2.5046 33 1 4.1394 1.9266 -1.8202 34 1 3.5845 0.2493 -1.6028 35 1 6.4123 2.4420 -1.6437 36 1 8.7314 1.7264 -1.2307 37 1 9.1811 -0.4827 -0.2403 38 1 7.4952 -3.0988 -0.2827 39 1 8.3108 -2.3157 1.0920 40 1 6.5622 -2.6405 1.1621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236852856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:42 Heat of formation + Delta-G solvation = 3.136826 kcal Electronic energy + Delta-G solvation = -20262.101837 eV Core-core repulsion = 17294.872632 eV Total energy + Delta-G solvation = -2967.229206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.34143 -36.92862 -35.92756 -33.31001 -32.85618 -31.93473 -30.59796 -27.30466 -26.81619 -25.87777 -23.95715 -21.96638 -21.17591 -20.62275 -19.60606 -16.45789 -16.38626 -15.63697 -15.11971 -14.62149 -14.53135 -14.27369 -13.77357 -13.47303 -13.40630 -12.99876 -12.66893 -12.34642 -12.07643 -12.01721 -11.86761 -11.54924 -11.40629 -11.15193 -11.05757 -11.02472 -10.77771 -10.68960 -10.67216 -10.24124 -10.11325 -9.94835 -9.68927 -9.15203 -8.40773 -8.33047 -8.21422 -7.17701 -5.98646 -3.98667 1.54061 1.59039 2.64771 3.35663 3.39391 3.42946 3.91896 4.46619 4.94372 4.98328 5.04736 5.28476 5.37310 5.44921 5.50482 5.59424 5.64251 5.70894 5.73152 5.80245 5.87891 5.98546 6.00901 6.13829 6.20730 6.31324 6.33823 6.36633 6.51352 6.62445 6.68270 6.79826 6.82899 6.92612 7.14635 7.36647 7.39393 7.85486 8.15126 8.27668 8.60109 9.08751 9.64799 11.12292 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.006858 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.211695 B = 4081.897411 C = 5207.181842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.064 3.936 4 N -0.524 5.524 5 C 0.193 3.807 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.088 3.912 15 C -0.047 4.047 16 C -0.102 4.102 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.088 4.088 20 C -0.114 4.114 21 C -0.011 4.011 22 Cl -0.063 7.063 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.016 0.984 30 H 0.033 0.967 31 H -0.012 1.012 32 H 0.260 0.740 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -12.075 -7.309 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.064 4.064 4 N -0.248 5.248 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.040 4.040 15 C -0.049 4.049 16 C -0.121 4.121 17 C -0.133 4.133 18 C -0.137 4.137 19 C -0.088 4.088 20 C -0.171 4.171 21 C -0.038 4.038 22 Cl -0.034 7.034 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.005 0.995 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.832 -12.328 -6.885 14.401 hybrid contribution -0.492 0.992 0.453 1.196 sum 2.340 -11.336 -6.432 13.242 Atomic orbital electron populations 1.21744 0.96792 1.00750 1.01424 1.21544 0.94118 0.97947 1.01856 1.22025 0.88798 0.95362 1.00264 1.62087 1.04373 1.34212 1.24133 1.19753 0.96124 0.82302 0.95000 1.21122 1.32069 1.02438 0.98551 0.91945 1.24953 0.95399 0.96091 0.98058 1.69941 1.37775 1.08717 1.37465 0.86615 0.79013 0.77213 0.84898 1.20214 1.21425 1.20330 1.21031 0.90745 0.99267 0.92965 1.19738 0.96385 0.91947 0.96803 1.21043 0.91923 0.98982 1.00119 1.21108 0.96762 0.96165 0.99285 1.20845 0.98019 0.94283 1.00591 1.19679 0.91352 0.97481 1.00329 1.20802 1.02707 0.93073 1.00487 1.20538 0.88045 0.92836 1.02386 1.98323 1.47716 1.65228 1.92149 0.92680 0.93415 0.93456 0.93105 0.91387 0.89547 0.96549 0.94878 0.99458 0.93002 0.94728 0.90728 0.85542 0.85914 0.85875 0.91307 0.91545 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.90 5.68 -26.73 -0.15 -2.05 16 3 C 0.06 1.24 4.79 -3.82 -0.02 1.22 16 4 N -0.52 -11.20 4.26 -237.51 -1.01 -12.21 16 5 C 0.19 5.00 4.55 -4.97 -0.02 4.98 16 6 C -0.50 -14.18 8.23 -34.44 -0.28 -14.46 16 7 H 0.06 1.75 7.31 -52.49 -0.38 1.37 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.09 1.62 4.27 -4.97 -0.02 1.60 16 15 C -0.05 -0.85 4.80 -104.59 -0.50 -1.35 16 16 C -0.10 -1.72 8.95 -39.59 -0.35 -2.07 16 17 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 18 C -0.12 -1.66 9.70 -39.59 -0.38 -2.04 16 19 C -0.09 -1.31 5.88 -104.59 -0.62 -1.93 16 20 C -0.11 -1.37 9.62 36.01 0.35 -1.02 16 21 C -0.01 -0.19 6.31 -39.50 -0.25 -0.43 16 22 Cl -0.06 -1.01 25.60 -51.86 -1.33 -2.34 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.79 6.90 -51.93 -0.36 0.43 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.87 6.58 -51.93 -0.34 1.53 16 29 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 30 H 0.03 0.92 6.81 -51.93 -0.35 0.57 16 31 H -0.01 -0.34 8.12 -51.93 -0.42 -0.77 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.03 0.64 7.82 -51.93 -0.41 0.23 16 34 H 0.07 1.26 6.01 -51.93 -0.31 0.95 16 35 H 0.13 2.06 8.00 -52.49 -0.42 1.64 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -29.97 337.89 -10.20 -40.16 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.29 Total: -1.76 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -2.38 Total: -19.83 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.27 Total: -38.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.33 Total: -2.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.97 -10.20 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236852856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.302 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds