Wall clock time and date at job start Tue Mar 31 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46923 * 2 1 4 4 N 1.46900 * 109.46914 * 174.89556 * 3 2 1 5 5 C 1.46904 * 111.00313 * 199.75455 * 4 3 2 6 6 C 1.50704 * 109.46791 * 66.04789 * 5 4 3 7 7 H 1.08001 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00341 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99665 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47371 * 60.00648 * 10 8 6 12 12 H 1.48504 * 109.46884 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47532 * 300.00277 * 10 8 6 14 14 C 1.46901 * 111.00105 * 75.80435 * 4 3 2 15 15 C 1.50701 * 109.47559 * 198.84538 * 14 4 3 16 16 C 1.38233 * 120.00704 * 255.31728 * 15 14 4 17 17 C 1.38216 * 120.01504 * 180.25171 * 16 15 14 18 18 C 1.38266 * 120.02312 * 359.76630 * 17 16 15 19 19 C 1.38185 * 120.01508 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00558 * 180.02562 * 19 18 17 21 21 C 1.38329 * 120.00753 * 75.07852 * 15 14 4 22 22 Cl 1.73603 * 120.01227 * 0.02562 * 21 15 14 23 23 H 1.09001 * 109.47104 * 304.97113 * 1 2 3 24 24 H 1.08994 * 109.47603 * 64.97505 * 1 2 3 25 25 H 1.09002 * 109.47223 * 184.97726 * 1 2 3 26 26 H 1.08999 * 109.46973 * 240.00090 * 2 1 3 27 27 H 1.08999 * 109.47105 * 119.99811 * 2 1 3 28 28 H 1.09005 * 109.47304 * 54.90130 * 3 2 1 29 29 H 1.08995 * 109.47166 * 294.89800 * 3 2 1 30 30 H 1.08994 * 109.47318 * 186.04885 * 5 4 3 31 31 H 1.08996 * 109.47105 * 306.04952 * 5 4 3 32 32 H 0.96996 * 120.00311 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46970 * 78.84194 * 14 4 3 34 34 H 1.09006 * 109.46846 * 318.84437 * 14 4 3 35 35 H 1.08002 * 119.99311 * 359.97438 * 16 15 14 36 36 H 1.08002 * 119.98922 * 179.74454 * 17 16 15 37 37 H 1.08006 * 119.98949 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.46631 * 269.97606 * 20 19 18 39 39 H 1.08996 * 109.47065 * 29.97602 * 20 19 18 40 40 H 1.08996 * 109.46707 * 149.98187 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4443 0.1232 5 6 3.9911 2.7489 0.5908 6 6 3.5125 2.9884 1.9996 7 1 2.9072 2.2456 2.4979 8 6 3.8473 4.1557 2.6524 9 7 4.5840 5.0605 2.0455 10 14 3.2534 4.4528 4.3983 11 1 3.7739 3.3830 5.2871 12 1 3.7452 5.7721 4.8706 13 1 1.7688 4.4400 4.4252 14 6 4.1394 1.0694 -1.1469 15 6 5.5587 0.6333 -0.8889 16 6 6.6090 1.4733 -1.2086 17 6 7.9110 1.0714 -0.9769 18 6 8.1635 -0.1690 -0.4207 19 6 7.1142 -1.0074 -0.0958 20 6 7.3897 -2.3592 0.5110 21 6 5.8106 -0.6056 -0.3276 22 17 4.4919 -1.6588 0.0793 23 1 -0.3633 0.5890 0.8421 24 1 -0.3634 0.4347 -0.9311 25 1 -0.3634 -1.0238 0.0892 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6039 1.9821 0.8408 29 1 1.7531 1.9293 -0.9321 30 1 5.0808 2.7581 0.5708 31 1 3.6091 3.5344 -0.0612 32 1 4.8193 5.8819 2.5046 33 1 4.1394 1.9266 -1.8202 34 1 3.5845 0.2493 -1.6028 35 1 6.4123 2.4420 -1.6437 36 1 8.7314 1.7264 -1.2307 37 1 9.1811 -0.4827 -0.2403 38 1 7.4952 -3.0988 -0.2827 39 1 8.3108 -2.3157 1.0920 40 1 6.5622 -2.6405 1.1621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236852856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:42 Heat of formation + Delta-G solvation = -12.525678 kcal Electronic energy + Delta-G solvation = -20262.781014 eV Core-core repulsion = 17294.872632 eV Total energy + Delta-G solvation = -2967.908383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59790 -38.52781 -37.17058 -34.93906 -34.51797 -33.30405 -31.98490 -29.22646 -27.93072 -27.22954 -25.75858 -23.40465 -22.64086 -21.92929 -21.15349 -18.52901 -17.67409 -17.05294 -16.55847 -16.32857 -16.23214 -15.50220 -15.17819 -14.93433 -14.72528 -14.34022 -13.98058 -13.86834 -13.59791 -13.44479 -13.16966 -12.95803 -12.82766 -12.68693 -12.60916 -12.45310 -12.29292 -12.23899 -12.08113 -11.93042 -11.59989 -11.41745 -11.26868 -11.19268 -10.58676 -9.57977 -9.43521 -8.95137 -8.18325 -6.26694 0.32116 0.36892 1.39089 1.39686 1.41974 1.49643 2.40186 2.69034 3.14170 3.41418 3.78498 3.86694 4.06805 4.14118 4.29186 4.35673 4.40443 4.48983 4.51908 4.62742 4.72197 4.74927 4.83617 4.87025 4.96539 4.98726 5.01362 5.19708 5.22961 5.28594 5.29667 5.43243 5.45834 5.50655 5.54284 5.58247 5.68341 5.98059 6.10067 6.41448 6.66484 6.89257 7.41868 8.92399 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.006858 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.211695 B = 4081.897411 C = 5207.181842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.063 3.937 4 N -0.526 5.526 5 C 0.214 3.786 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.093 3.907 15 C -0.074 4.074 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.030 4.030 22 Cl -0.062 7.062 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.009 0.991 31 H -0.044 1.044 32 H 0.263 0.737 33 H 0.027 0.973 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -13.714 -6.724 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.064 4.064 4 N -0.250 5.250 5 C 0.088 3.912 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.193 1.193 14 C -0.035 4.035 15 C -0.075 4.075 16 C -0.144 4.144 17 C -0.134 4.134 18 C -0.132 4.132 19 C -0.093 4.093 20 C -0.168 4.168 21 C -0.058 4.058 22 Cl -0.033 7.033 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.027 0.973 31 H -0.027 1.027 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.284 -13.987 -6.312 15.693 hybrid contribution -0.585 1.476 0.209 1.602 sum 2.699 -12.511 -6.103 14.179 Atomic orbital electron populations 1.21710 0.94543 1.02174 1.01800 1.21425 0.95964 0.95155 1.01687 1.22061 0.87617 0.97541 0.99229 1.62035 1.05580 1.31167 1.26199 1.19329 0.94391 0.83653 0.93857 1.21407 1.32084 1.02622 0.99586 0.92316 1.25816 0.95402 0.95763 1.02346 1.70068 1.38790 1.09176 1.39241 0.85554 0.78914 0.77267 0.79610 1.19637 1.20754 1.19282 1.21028 0.91709 0.99352 0.91411 1.19771 0.95980 0.93067 0.98671 1.21162 0.93116 0.98840 1.01236 1.21450 0.96411 0.97049 0.98477 1.21294 0.99531 0.93445 0.98979 1.20133 0.90705 0.98943 0.99554 1.20863 1.03288 0.91669 1.01008 1.20752 0.89168 0.92763 1.03068 1.98310 1.47842 1.64957 1.92165 0.93275 0.92320 0.91293 0.92077 0.92628 0.92173 0.96188 0.97315 1.02660 0.92826 0.95462 0.89139 0.86405 0.83379 0.82253 0.89390 0.89518 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.10 -3.32 5.68 30.59 0.17 -3.15 16 3 C 0.06 2.52 4.79 86.30 0.41 2.93 16 4 N -0.53 -23.21 4.26 -905.35 -3.85 -27.06 16 5 C 0.21 11.60 4.55 85.56 0.39 11.99 16 6 C -0.52 -30.02 8.23 25.60 0.21 -29.81 16 7 H 0.06 3.37 7.31 -2.91 -0.02 3.35 16 8 C 0.00 0.27 5.46 84.66 0.46 0.74 16 9 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 10 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.09 3.52 4.27 85.56 0.37 3.88 16 15 C -0.07 -2.69 4.80 -19.84 -0.10 -2.78 16 16 C -0.12 -4.30 8.95 22.26 0.20 -4.10 16 17 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 18 C -0.11 -2.91 9.70 22.26 0.22 -2.69 16 19 C -0.09 -2.60 5.88 -19.84 -0.12 -2.72 16 20 C -0.11 -2.37 9.62 71.24 0.68 -1.69 16 21 C -0.03 -1.02 6.31 22.32 0.14 -0.88 16 22 Cl -0.06 -1.93 25.60 -2.72 -0.07 -2.00 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.81 6.90 -2.39 -0.02 1.80 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 2.69 6.58 -2.38 -0.02 2.67 16 29 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 30 H 0.01 0.51 6.81 -2.39 -0.02 0.50 16 31 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 32 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.03 1.06 7.82 -2.39 -0.02 1.04 16 34 H 0.09 3.07 6.01 -2.38 -0.01 3.06 16 35 H 0.12 4.10 8.00 -2.91 -0.02 4.07 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 40 H 0.06 1.48 6.91 -2.39 -0.02 1.47 16 Total: -1.00 -65.76 337.89 3.38 -62.39 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.01 Total: 10.22 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.98 Total: -34.35 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.57 Total: -83.51 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.07 Total: -2.00 kcal Total: -65.76 3.38 -62.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236852856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.860 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds