Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47343 * 2 1 4 4 C 1.46893 * 111.00223 * 299.50863 * 3 2 1 5 5 C 1.50703 * 109.47232 * 293.95670 * 4 3 2 6 6 H 1.07996 * 119.99704 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00145 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99742 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99984 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47106 * 89.99875 * 9 7 5 11 11 H 1.48501 * 109.47177 * 210.00298 * 9 7 5 12 12 H 1.48503 * 109.47307 * 330.00264 * 9 7 5 13 13 C 1.46906 * 110.99920 * 63.46285 * 3 2 1 14 14 C 1.50707 * 109.47155 * 71.55979 * 13 3 2 15 15 C 1.38233 * 120.00687 * 254.99045 * 14 13 3 16 16 C 1.38225 * 120.00993 * 179.79358 * 15 14 13 17 17 C 1.50700 * 119.98645 * 180.25249 * 16 15 14 18 18 C 1.38263 * 120.02377 * 0.45783 * 16 15 14 19 19 C 1.38186 * 120.01643 * 359.79621 * 18 16 15 20 20 C 1.50700 * 120.00625 * 179.97438 * 19 18 16 21 21 C 1.38333 * 120.00051 * 75.26312 * 14 13 3 22 22 Cl 1.73599 * 120.01750 * 0.02562 * 21 14 13 23 23 H 1.09000 * 109.47410 * 60.20275 * 1 2 3 24 24 H 1.09001 * 109.47443 * 180.21031 * 1 2 3 25 25 H 1.09001 * 109.46668 * 300.20538 * 1 2 3 26 26 H 1.09001 * 109.46825 * 239.99946 * 2 1 3 27 27 H 1.09006 * 109.46904 * 120.00169 * 2 1 3 28 28 H 1.09008 * 109.47041 * 53.95191 * 4 3 2 29 29 H 1.08997 * 109.47197 * 173.95355 * 4 3 2 30 30 H 0.97010 * 119.99828 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47216 * 191.55937 * 13 3 2 32 32 H 1.09000 * 109.46820 * 311.56515 * 13 3 2 33 33 H 1.07999 * 119.99680 * 359.97438 * 15 14 13 34 34 H 1.08991 * 109.46951 * 270.21108 * 17 16 15 35 35 H 1.09003 * 109.46849 * 30.20983 * 17 16 15 36 36 H 1.08996 * 109.47358 * 150.20579 * 17 16 15 37 37 H 1.08004 * 119.98723 * 179.77015 * 18 16 15 38 38 H 1.09000 * 109.46998 * 270.01509 * 20 19 18 39 39 H 1.08998 * 109.47663 * 30.01809 * 20 19 18 40 40 H 1.09004 * 109.47093 * 150.02354 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5584 2.1065 -1.1935 5 6 2.1905 1.5027 -2.4211 6 1 2.8674 0.6669 -2.3243 7 6 1.9052 2.0181 -3.6677 8 7 2.4572 1.4915 -4.7389 9 14 0.7348 3.4643 -3.8351 10 1 1.5021 4.7334 -3.7597 11 1 0.0348 3.3859 -5.1424 12 1 -0.2631 3.4232 -2.7360 13 6 1.6175 2.0856 1.2270 14 6 2.4092 1.5515 2.3929 15 6 1.8093 0.7044 3.3058 16 6 2.5366 0.2112 4.3728 17 6 1.8837 -0.7168 5.3645 18 6 3.8616 0.5723 4.5329 19 6 4.4608 1.4232 3.6238 20 6 5.9049 1.8171 3.7988 21 6 3.7347 1.9135 2.5527 22 17 4.4865 2.9835 1.4110 23 1 -0.3634 0.5107 -0.8918 24 1 -0.3634 -1.0276 0.0038 25 1 -0.3633 0.5170 0.8882 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4736 2.0293 -1.2680 29 1 1.8436 3.1557 -1.1166 30 1 2.2568 1.8543 -5.6160 31 1 1.8097 3.1527 1.1157 32 1 0.5544 1.9244 1.4055 33 1 0.7731 0.4256 3.1838 34 1 1.4377 -0.1328 6.1695 35 1 1.1084 -1.2966 4.8636 36 1 2.6327 -1.3924 5.7777 37 1 4.4282 0.1895 5.3688 38 1 5.9641 2.7197 4.4070 39 1 6.4445 1.0096 4.2936 40 1 6.3506 2.0071 2.8224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237705073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = 11.535924 kcal Electronic energy + Delta-G solvation = -20198.125411 eV Core-core repulsion = 17231.260417 eV Total energy + Delta-G solvation = -2966.864993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74025 -37.24901 -36.07016 -33.32792 -32.88561 -32.09308 -29.62609 -28.02780 -27.11078 -26.51969 -24.89806 -22.87598 -20.84036 -20.69730 -19.02793 -16.71788 -16.46714 -16.19190 -15.00996 -14.84382 -14.45476 -14.11186 -13.98099 -13.43033 -13.31962 -13.07613 -13.01066 -12.69664 -12.50088 -12.20998 -12.04512 -12.01665 -11.59461 -11.43619 -11.18828 -11.08704 -10.98860 -10.81688 -10.53656 -10.48201 -10.17194 -9.92010 -9.82822 -9.22550 -8.58257 -8.51609 -8.22632 -7.25392 -6.00421 -3.96422 1.30065 1.37764 2.60290 3.30657 3.37971 3.39394 3.65936 4.45460 4.71460 4.75415 4.81258 5.04800 5.22442 5.25228 5.32560 5.45727 5.47568 5.54840 5.60333 5.62104 5.74883 5.78966 5.83910 5.90054 5.95439 6.07895 6.11249 6.20776 6.36617 6.43224 6.52817 6.55746 6.62956 6.85654 6.94453 7.00643 7.11061 7.65330 7.95423 8.11228 8.71469 9.09639 9.61790 11.12920 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.005426 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.399652 B = 5158.902050 C = 5953.362387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 N -0.511 5.511 4 C 0.160 3.840 5 C -0.501 4.501 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.080 3.920 14 C -0.047 4.047 15 C -0.112 4.112 16 C -0.086 4.086 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.079 4.079 20 C -0.117 4.117 21 C -0.020 4.020 22 Cl -0.050 7.050 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.054 0.946 28 H -0.006 1.006 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 -1.202 20.394 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.068 4.068 3 N -0.233 5.233 4 C 0.034 3.966 5 C -0.539 4.539 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.048 4.048 14 C -0.049 4.049 15 C -0.131 4.131 16 C -0.086 4.086 17 C -0.168 4.168 18 C -0.138 4.138 19 C -0.080 4.080 20 C -0.173 4.173 21 C -0.047 4.047 22 Cl -0.021 7.021 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.874 -1.087 20.048 20.096 hybrid contribution -1.478 0.894 -0.374 1.767 sum -0.604 -0.193 19.674 19.684 Atomic orbital electron populations 1.22392 0.99582 1.01143 1.01617 1.22003 0.91839 0.91071 1.01901 1.62162 1.58966 1.01708 1.00503 1.20232 0.93873 0.93996 0.88487 1.21000 1.27126 1.17406 0.88370 0.90157 1.24867 0.95891 0.96661 0.95849 1.69894 1.44204 1.41856 0.98177 0.86931 0.81909 0.83804 0.77522 1.20223 1.21321 1.19303 1.21125 0.95598 0.98840 0.89199 1.19807 0.92720 0.96323 0.96035 1.20861 0.99899 0.97947 0.94394 1.19864 0.94097 0.98254 0.96373 1.20755 1.00564 0.97860 0.97601 1.20734 0.94575 0.99204 0.99265 1.19719 0.96573 0.97628 0.94086 1.20837 0.91587 1.01542 1.03375 1.20663 0.93221 0.98103 0.92694 1.98381 1.81394 1.62748 1.59533 0.91522 0.93164 0.93814 0.89573 0.92775 0.98796 0.96029 0.92786 0.90212 0.94103 0.85806 0.91333 0.91509 0.91633 0.85816 0.91080 0.91481 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.27 37.16 0.34 -2.89 16 2 C 0.06 1.15 5.73 -3.82 -0.02 1.13 16 3 N -0.51 -10.58 4.57 -237.51 -1.08 -11.66 16 4 C 0.16 3.84 3.55 -4.98 -0.02 3.83 16 5 C -0.50 -14.15 9.06 -34.44 -0.31 -14.46 16 6 H 0.08 2.49 7.35 -52.49 -0.39 2.11 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 9 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.08 1.40 4.31 -4.97 -0.02 1.38 16 14 C -0.05 -0.75 4.65 -104.59 -0.49 -1.23 16 15 C -0.11 -1.51 8.74 -39.59 -0.35 -1.85 16 16 C -0.09 -1.01 5.88 -104.62 -0.62 -1.62 16 17 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 18 C -0.12 -1.40 9.36 -39.59 -0.37 -1.77 16 19 C -0.08 -1.06 5.88 -104.59 -0.62 -1.67 16 20 C -0.12 -1.28 9.62 36.01 0.35 -0.93 16 21 C -0.02 -0.31 6.31 -39.49 -0.25 -0.56 16 22 Cl -0.05 -0.84 25.90 -51.86 -1.34 -2.19 16 23 H 0.07 1.30 6.30 -51.93 -0.33 0.97 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.67 6.25 -51.93 -0.32 0.35 16 26 H 0.09 1.88 6.84 -51.93 -0.36 1.52 16 27 H 0.05 0.96 6.92 -51.93 -0.36 0.60 16 28 H -0.01 -0.13 5.08 -51.92 -0.26 -0.40 16 29 H 0.02 0.53 7.29 -51.93 -0.38 0.15 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.08 1.43 7.25 -51.93 -0.38 1.05 16 32 H 0.04 0.67 5.72 -51.93 -0.30 0.37 16 33 H 0.12 1.50 8.00 -52.49 -0.42 1.08 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.07 0.90 6.90 -51.93 -0.36 0.54 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -30.59 329.45 -9.42 -40.01 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.96 Total: -1.73 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.10 Total: -19.35 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.31 Total: -38.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.34 Total: -2.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.59 -9.42 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237705073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.547 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds