Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47343 * 2 1 4 4 C 1.46893 * 111.00223 * 299.50863 * 3 2 1 5 5 C 1.50703 * 109.47232 * 293.95670 * 4 3 2 6 6 H 1.07996 * 119.99704 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00145 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99742 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99984 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47106 * 89.99875 * 9 7 5 11 11 H 1.48501 * 109.47177 * 210.00298 * 9 7 5 12 12 H 1.48503 * 109.47307 * 330.00264 * 9 7 5 13 13 C 1.46906 * 110.99920 * 63.46285 * 3 2 1 14 14 C 1.50707 * 109.47155 * 71.55979 * 13 3 2 15 15 C 1.38233 * 120.00687 * 254.99045 * 14 13 3 16 16 C 1.38225 * 120.00993 * 179.79358 * 15 14 13 17 17 C 1.50700 * 119.98645 * 180.25249 * 16 15 14 18 18 C 1.38263 * 120.02377 * 0.45783 * 16 15 14 19 19 C 1.38186 * 120.01643 * 359.79621 * 18 16 15 20 20 C 1.50700 * 120.00625 * 179.97438 * 19 18 16 21 21 C 1.38333 * 120.00051 * 75.26312 * 14 13 3 22 22 Cl 1.73599 * 120.01750 * 0.02562 * 21 14 13 23 23 H 1.09000 * 109.47410 * 60.20275 * 1 2 3 24 24 H 1.09001 * 109.47443 * 180.21031 * 1 2 3 25 25 H 1.09001 * 109.46668 * 300.20538 * 1 2 3 26 26 H 1.09001 * 109.46825 * 239.99946 * 2 1 3 27 27 H 1.09006 * 109.46904 * 120.00169 * 2 1 3 28 28 H 1.09008 * 109.47041 * 53.95191 * 4 3 2 29 29 H 1.08997 * 109.47197 * 173.95355 * 4 3 2 30 30 H 0.97010 * 119.99828 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47216 * 191.55937 * 13 3 2 32 32 H 1.09000 * 109.46820 * 311.56515 * 13 3 2 33 33 H 1.07999 * 119.99680 * 359.97438 * 15 14 13 34 34 H 1.08991 * 109.46951 * 270.21108 * 17 16 15 35 35 H 1.09003 * 109.46849 * 30.20983 * 17 16 15 36 36 H 1.08996 * 109.47358 * 150.20579 * 17 16 15 37 37 H 1.08004 * 119.98723 * 179.77015 * 18 16 15 38 38 H 1.09000 * 109.46998 * 270.01509 * 20 19 18 39 39 H 1.08998 * 109.47663 * 30.01809 * 20 19 18 40 40 H 1.09004 * 109.47093 * 150.02354 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5584 2.1065 -1.1935 5 6 2.1905 1.5027 -2.4211 6 1 2.8674 0.6669 -2.3243 7 6 1.9052 2.0181 -3.6677 8 7 2.4572 1.4915 -4.7389 9 14 0.7348 3.4643 -3.8351 10 1 1.5021 4.7334 -3.7597 11 1 0.0348 3.3859 -5.1424 12 1 -0.2631 3.4232 -2.7360 13 6 1.6175 2.0856 1.2270 14 6 2.4092 1.5515 2.3929 15 6 1.8093 0.7044 3.3058 16 6 2.5366 0.2112 4.3728 17 6 1.8837 -0.7168 5.3645 18 6 3.8616 0.5723 4.5329 19 6 4.4608 1.4232 3.6238 20 6 5.9049 1.8171 3.7988 21 6 3.7347 1.9135 2.5527 22 17 4.4865 2.9835 1.4110 23 1 -0.3634 0.5107 -0.8918 24 1 -0.3634 -1.0276 0.0038 25 1 -0.3633 0.5170 0.8882 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4736 2.0293 -1.2680 29 1 1.8436 3.1557 -1.1166 30 1 2.2568 1.8543 -5.6160 31 1 1.8097 3.1527 1.1157 32 1 0.5544 1.9244 1.4055 33 1 0.7731 0.4256 3.1838 34 1 1.4377 -0.1328 6.1695 35 1 1.1084 -1.2966 4.8636 36 1 2.6327 -1.3924 5.7777 37 1 4.4282 0.1895 5.3688 38 1 5.9641 2.7197 4.4070 39 1 6.4445 1.0096 4.2936 40 1 6.3506 2.0071 2.8224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237705073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = -6.175926 kcal Electronic energy + Delta-G solvation = -20198.893454 eV Core-core repulsion = 17231.260417 eV Total energy + Delta-G solvation = -2967.633037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81616 -38.76448 -37.25367 -34.82703 -34.20457 -33.52638 -31.26796 -29.56679 -28.15179 -27.43673 -26.34258 -24.66984 -22.20130 -21.67820 -20.53098 -18.86030 -17.52233 -17.33749 -16.69035 -16.39091 -15.99816 -15.44589 -15.08739 -14.64459 -14.49830 -14.38217 -14.15725 -14.03268 -13.52841 -13.46689 -13.31025 -13.23850 -13.08677 -12.72906 -12.63539 -12.45035 -12.39835 -12.14828 -12.01178 -11.88045 -11.78147 -11.52350 -11.39715 -11.30279 -10.75077 -9.61286 -9.27085 -8.86796 -8.25423 -6.26691 0.27786 0.35413 1.33835 1.34389 1.44758 1.44983 2.34956 2.62894 3.08365 3.40047 3.73913 3.82068 3.94757 4.23454 4.29734 4.36935 4.39343 4.48778 4.52652 4.65084 4.68569 4.71588 4.75421 4.79360 4.84894 4.91624 4.97191 5.04357 5.09869 5.21063 5.28477 5.32048 5.42904 5.45100 5.51153 5.60003 5.64087 5.98412 6.04159 6.44597 6.69971 6.79186 7.35950 8.91525 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.005426 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.399652 B = 5158.902050 C = 5953.362387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.065 3.935 3 N -0.526 5.526 4 C 0.173 3.827 5 C -0.502 4.502 6 H 0.035 0.965 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.940 3.060 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.086 3.914 14 C -0.068 4.068 15 C -0.117 4.117 16 C -0.080 4.080 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.086 4.086 20 C -0.116 4.116 21 C -0.045 4.045 22 Cl -0.077 7.077 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.072 0.928 28 H -0.001 1.001 29 H 0.018 0.982 30 H 0.265 0.735 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 -1.338 23.566 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.063 4.063 3 N -0.249 5.249 4 C 0.046 3.954 5 C -0.541 4.541 6 H 0.054 0.946 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.764 3.236 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.173 1.173 13 C -0.041 4.041 14 C -0.069 4.069 15 C -0.136 4.136 16 C -0.080 4.080 17 C -0.166 4.166 18 C -0.134 4.134 19 C -0.087 4.087 20 C -0.172 4.172 21 C -0.072 4.072 22 Cl -0.048 7.048 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.017 0.983 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.173 0.827 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.504 -1.231 23.252 23.290 hybrid contribution -0.961 0.807 -1.235 1.761 sum -1.465 -0.424 22.017 22.070 Atomic orbital electron populations 1.22280 0.97545 1.02563 1.01360 1.21895 0.93483 0.90096 1.00842 1.61995 1.59854 1.02322 1.00756 1.19934 0.93508 0.93590 0.88334 1.21195 1.26222 1.16133 0.90543 0.94643 1.25762 0.97850 0.99822 0.95334 1.70053 1.46289 1.43930 0.98885 0.85819 0.79867 0.79764 0.78143 1.19505 1.20776 1.17252 1.21067 0.96752 0.98031 0.88257 1.19730 0.92819 0.98032 0.96302 1.21055 1.00724 0.97408 0.94419 1.20276 0.94068 0.97631 0.96072 1.20828 1.01027 0.97606 0.97135 1.21144 0.94889 0.97996 0.99400 1.20048 0.97538 0.97518 0.93575 1.20873 0.90392 1.02957 1.02989 1.20898 0.93727 0.99104 0.93459 1.98363 1.81849 1.63801 1.60742 0.94113 0.91007 0.91477 0.93411 0.90954 0.98309 0.96416 0.92624 0.91232 0.92612 0.84383 0.89784 0.90923 0.90093 0.82689 0.89823 0.89246 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.86 9.27 71.98 0.67 -5.19 16 2 C 0.06 2.50 5.73 86.30 0.49 2.99 16 3 N -0.53 -22.03 4.57 -905.33 -4.13 -26.16 16 4 C 0.17 8.42 3.55 85.56 0.30 8.72 16 5 C -0.50 -29.55 9.06 25.60 0.23 -29.32 16 6 H 0.04 2.34 7.35 -2.91 -0.02 2.32 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 9 Si 0.94 45.01 27.47 68.60 1.88 46.90 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 13 C 0.09 2.95 4.31 85.56 0.37 3.32 16 14 C -0.07 -2.04 4.65 -19.84 -0.09 -2.14 16 15 C -0.12 -2.83 8.74 22.27 0.19 -2.64 16 16 C -0.08 -1.60 5.88 -19.86 -0.12 -1.72 16 17 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 18 C -0.12 -2.33 9.36 22.26 0.21 -2.12 16 19 C -0.09 -2.14 5.88 -19.84 -0.12 -2.26 16 20 C -0.12 -2.34 9.62 71.24 0.69 -1.65 16 21 C -0.04 -1.39 6.31 22.33 0.14 -1.24 16 22 Cl -0.08 -2.66 25.90 -2.72 -0.07 -2.73 16 23 H 0.04 1.54 6.30 -2.39 -0.02 1.53 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 1.87 6.25 -2.39 -0.01 1.86 16 26 H 0.05 2.18 6.84 -2.39 -0.02 2.16 16 27 H 0.07 2.49 6.92 -2.38 -0.02 2.48 16 28 H 0.00 -0.03 5.08 -2.38 -0.01 -0.04 16 29 H 0.02 0.88 7.29 -2.39 -0.02 0.86 16 30 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 31 H 0.07 2.49 7.25 -2.39 -0.02 2.47 16 32 H 0.06 1.71 5.72 -2.39 -0.01 1.70 16 33 H 0.14 2.86 8.00 -2.91 -0.02 2.84 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 36 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 37 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 40 H 0.06 1.40 6.90 -2.38 -0.02 1.38 16 Total: -1.00 -69.12 329.45 3.10 -66.03 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.97 Total: 9.17 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 4.15 Total: -32.91 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.83 Total: -86.46 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.07 Total: -2.73 kcal Total: -69.12 3.10 -66.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237705073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.851 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds