Wall clock time and date at job start Tue Mar 31 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46948 * 2 1 4 4 N 1.46496 * 109.47303 * 120.00064 * 2 1 3 5 5 C 1.34699 * 125.81651 * 275.02514 * 4 2 1 6 6 C 1.37847 * 107.39430 * 179.97438 * 5 4 2 7 7 C 1.48027 * 126.36547 * 179.97438 * 6 5 4 8 8 C 1.39992 * 119.49827 * 0.02562 * 7 6 5 9 9 C 1.35982 * 121.19243 * 180.02562 * 8 7 6 10 10 C 1.41061 * 120.10921 * 359.97438 * 9 8 7 11 11 C 1.40423 * 120.48827 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00078 * 204.74194 * 11 10 9 13 13 C 1.40260 * 119.99689 * 24.73374 * 11 10 9 14 14 N 1.30661 * 120.00282 * 17.52561 * 13 11 10 15 15 Si 1.86797 * 119.99509 * 197.52513 * 13 11 10 16 16 H 1.48506 * 109.47473 * 60.00260 * 15 13 11 17 17 H 1.48500 * 109.47013 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47380 * 300.00058 * 15 13 11 19 19 C 1.46645 * 119.02163 * 359.97438 * 10 9 8 20 20 C 1.43204 * 120.56214 * 179.97438 * 19 10 9 21 21 N 9.52942 * 109.09205 * 115.91132 * 2 1 3 22 22 C 1.39071 * 118.87036 * 359.77316 * 19 10 9 23 23 C 1.41083 * 107.26967 * 0.02562 * 6 5 4 24 24 N 1.30555 * 108.11946 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.46937 * 299.99793 * 1 2 3 26 26 H 1.09002 * 109.46983 * 60.00029 * 1 2 3 27 27 H 1.08999 * 109.46611 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46937 * 240.00207 * 2 1 3 29 29 H 1.09006 * 109.46720 * 60.00101 * 3 2 1 30 30 H 1.09002 * 109.46757 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47174 * 300.00283 * 3 2 1 32 32 H 1.07999 * 126.30461 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.40401 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.94187 * 179.97438 * 9 8 7 35 35 H 0.96999 * 119.99940 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.10119 * 180.23904 * 22 19 10 37 37 H 1.07999 * 125.94284 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1910 -0.1358 2.4114 6 6 2.6624 -1.1220 3.2513 7 6 2.9954 -0.9681 4.6854 8 6 2.8343 0.2790 5.3006 9 6 3.1301 0.4592 6.6155 10 6 3.6084 -0.6202 7.3876 11 6 3.9158 -0.4432 8.7463 12 1 4.6264 -1.0978 9.2289 13 6 3.3001 0.5839 9.4766 14 7 2.2142 1.1495 9.0204 15 14 4.0327 1.1431 11.1013 16 1 5.4137 1.6409 10.8765 17 1 3.1999 2.2327 11.6709 18 1 4.0667 0.0000 12.0486 19 6 3.7787 -1.9300 6.7507 20 6 4.2625 -3.0482 7.5032 21 7 4.6470 -3.9351 8.1000 22 6 3.4585 -2.0688 5.4045 23 6 2.7696 -2.3048 2.4899 24 7 2.3860 -2.0389 1.2706 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.9952 0.8921 2.6787 33 1 2.4693 1.1134 4.7201 34 1 2.9986 1.4303 7.0695 35 1 1.7886 1.8600 9.5253 36 1 3.5726 -3.0255 4.9164 37 1 3.1107 -3.2633 2.8523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242435566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:11 Heat of formation + Delta-G solvation = 93.564193 kcal Electronic energy + Delta-G solvation = -20300.165589 eV Core-core repulsion = 17235.750114 eV Total energy + Delta-G solvation = -3064.415475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95654 -39.34069 -37.00515 -36.60961 -35.74327 -32.64858 -31.69530 -30.94679 -29.89440 -28.16563 -27.04111 -24.34027 -23.54153 -23.02464 -21.29084 -20.53440 -19.41605 -18.71027 -17.39748 -17.11676 -16.18671 -15.91955 -15.60869 -15.56748 -14.95692 -14.85318 -14.50790 -14.35289 -13.88395 -13.78845 -13.61223 -13.44361 -13.41920 -13.09842 -13.02199 -12.85528 -12.81114 -12.55142 -12.33865 -12.24474 -12.00332 -11.75443 -11.47971 -11.27392 -11.15253 -10.23386 -10.04599 -9.39983 -8.86954 -8.51360 -6.37650 0.47336 0.76056 1.18416 1.38643 1.46299 1.50205 1.71293 2.05845 2.10118 2.16176 2.58261 2.79996 3.56064 3.69066 3.79199 3.99658 4.06967 4.12714 4.17289 4.45776 4.53851 4.63535 4.69890 4.74793 4.85229 4.90746 4.93049 4.99232 5.04843 5.18366 5.23866 5.28020 5.39541 5.57073 5.70996 5.93146 6.01740 6.18803 6.23101 6.32828 6.51711 6.69104 6.86643 6.91715 7.01548 8.10243 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.004066 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.876900 B = 6884.006817 C = 7916.085738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 C -0.159 4.159 4 N -0.363 5.363 5 C 0.047 3.953 6 C -0.177 4.177 7 C -0.132 4.132 8 C -0.059 4.059 9 C -0.177 4.177 10 C 0.129 3.871 11 C -0.463 4.463 12 H 0.068 0.932 13 C 0.047 3.953 14 N -0.781 5.781 15 Si 0.976 3.024 16 H -0.256 1.256 17 H -0.254 1.254 18 H -0.270 1.270 19 C -0.208 4.208 20 C 0.306 3.694 21 N -0.533 5.533 22 C -0.021 4.021 23 C 0.036 3.964 24 N -0.331 5.331 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.301 0.699 36 H 0.117 0.883 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 8.091 -14.449 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 C -0.217 4.217 4 N -0.146 5.146 5 C -0.099 4.099 6 C -0.188 4.188 7 C -0.135 4.135 8 C -0.078 4.078 9 C -0.196 4.196 10 C 0.124 3.876 11 C -0.490 4.490 12 H 0.086 0.914 13 C -0.174 4.174 14 N -0.404 5.404 15 Si 0.796 3.204 16 H -0.180 1.180 17 H -0.177 1.177 18 H -0.195 1.195 19 C -0.214 4.214 20 C -0.003 4.003 21 N -0.214 5.214 22 C -0.042 4.042 23 C -0.148 4.148 24 N -0.152 5.152 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.211 0.789 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.207 6.495 -14.812 16.711 hybrid contribution 0.281 0.451 1.655 1.738 sum -3.926 6.945 -13.157 15.387 Atomic orbital electron populations 1.22216 0.92813 1.02445 1.04223 1.21582 0.95491 0.93691 0.84665 1.22199 1.01816 0.92646 1.05069 1.48824 1.49975 1.06665 1.09111 1.22947 1.01792 1.00071 0.85130 1.19251 1.12013 0.93554 0.93967 1.17384 1.11469 0.93757 0.90875 1.20683 0.96893 0.96046 0.94195 1.20891 1.06802 0.98445 0.93436 1.18735 0.87288 0.88919 0.92687 1.19799 1.21112 1.12682 0.95434 0.91414 1.26718 0.93381 0.93929 1.03380 1.69708 1.12831 1.18466 1.39357 0.85329 0.79928 0.78822 0.76340 1.18003 1.17740 1.19527 1.16971 1.21766 0.88494 0.94149 1.26029 0.90836 0.91900 0.91487 1.80986 1.16017 1.13389 1.10962 1.20647 0.94998 0.97723 0.90842 1.24089 1.00317 0.99858 0.90573 1.76945 1.22334 0.94902 1.21029 0.92083 0.87807 0.93495 0.88074 0.91016 0.92328 0.87502 0.78916 0.85909 0.86309 0.88691 0.86513 0.79550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.52 71.98 0.69 -1.64 16 2 C 0.15 2.52 3.92 45.00 0.18 2.70 16 3 C -0.16 -1.92 8.83 71.98 0.64 -1.28 16 4 N -0.36 -9.50 3.51 -325.56 -1.14 -10.64 16 5 C 0.05 1.31 10.00 84.16 0.84 2.15 16 6 C -0.18 -5.91 6.07 -20.08 -0.12 -6.04 16 7 C -0.13 -5.08 5.88 -19.98 -0.12 -5.20 16 8 C -0.06 -2.28 9.44 22.17 0.21 -2.07 16 9 C -0.18 -7.91 8.63 22.44 0.19 -7.72 16 10 C 0.13 6.35 5.73 -19.86 -0.11 6.24 16 11 C -0.46 -23.27 8.56 23.29 0.20 -23.07 16 12 H 0.07 3.52 7.37 -2.91 -0.02 3.50 16 13 C 0.05 2.14 5.15 85.36 0.44 2.58 16 14 N -0.78 -35.30 10.95 21.88 0.24 -35.06 16 15 Si 0.98 34.97 29.60 68.60 2.03 37.00 16 16 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 17 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 18 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 19 C -0.21 -9.76 5.93 -19.64 -0.12 -9.87 16 20 C 0.31 14.91 14.29 88.33 1.26 16.17 16 21 N -0.53 -26.63 18.54 19.00 0.35 -26.28 16 22 C -0.02 -0.87 9.28 22.75 0.21 -0.66 16 23 C 0.04 1.17 11.40 85.58 0.98 2.15 16 24 N -0.33 -10.44 12.51 -56.36 -0.71 -11.15 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 0.83 7.14 -2.38 -0.02 0.82 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.19 4.17 6.44 -2.91 -0.02 4.15 16 33 H 0.12 3.88 6.92 -2.91 -0.02 3.86 16 34 H 0.12 5.40 6.17 -2.91 -0.02 5.38 16 35 H 0.30 12.03 8.29 -92.71 -0.77 11.26 16 36 H 0.12 4.27 6.98 -2.91 -0.02 4.25 16 37 H 0.19 5.36 7.30 -2.91 -0.02 5.34 16 Total: -1.00 -59.75 324.52 7.23 -52.52 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.10 Total: 19.18 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 5.36 Total: -25.57 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -1.26 Total: -83.13 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -59.75 7.23 -52.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242435566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.082 kcal (2) G-P(sol) polarization free energy of solvation -59.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds