Wall clock time and date at job start Tue Mar 31 2020 05:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 N 1.46501 * 109.47666 * 120.00320 * 2 1 3 5 5 C 1.35054 * 125.92346 * 275.00328 * 4 2 1 6 6 C 1.35072 * 107.98927 * 179.97438 * 5 4 2 7 7 C 1.40884 * 107.84654 * 359.97438 * 6 5 4 8 8 C 1.48334 * 126.04300 * 179.97438 * 7 6 5 9 9 C 1.39812 * 119.53505 * 359.72991 * 8 7 6 10 10 C 1.37705 * 121.17042 * 179.75091 * 9 8 7 11 11 C 1.39587 * 120.18726 * 0.52441 * 10 9 8 12 12 C 1.43198 * 120.45795 * 179.72115 * 11 10 9 13 13 N 8.99207 * 135.84024 * 227.89149 * 4 1 2 14 14 C 1.46546 * 119.08258 * 359.73626 * 11 10 9 15 15 C 1.40847 * 120.55044 * 179.97438 * 14 11 10 16 16 H 1.07992 * 119.99986 * 330.13788 * 15 14 11 17 17 C 1.40227 * 119.99526 * 150.13706 * 15 14 11 18 18 N 1.30663 * 119.99770 * 161.90720 * 17 15 14 19 19 Si 1.86795 * 120.00536 * 341.90783 * 17 15 14 20 20 H 1.48499 * 109.47436 * 95.39248 * 19 17 15 21 21 H 1.48506 * 109.47346 * 215.39408 * 19 17 15 22 22 H 1.48501 * 109.47052 * 335.39241 * 19 17 15 23 23 C 1.38604 * 119.53658 * 180.02562 * 8 7 6 24 24 N 1.31670 * 107.91406 * 359.72020 * 7 6 5 25 25 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47012 * 59.99418 * 1 2 3 27 27 H 1.09002 * 109.46732 * 299.99692 * 1 2 3 28 28 H 1.09003 * 109.47252 * 240.00871 * 2 1 3 29 29 H 1.09002 * 109.47070 * 60.00515 * 3 2 1 30 30 H 1.09000 * 109.47308 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47494 * 300.00711 * 3 2 1 32 32 H 1.07998 * 126.01043 * 359.97438 * 5 4 2 33 33 H 1.07989 * 126.07873 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.41046 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.90347 * 180.26034 * 10 9 8 36 36 H 0.97003 * 120.00139 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.12821 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1927 -0.1366 2.4154 6 6 2.6549 -1.0953 3.2470 7 6 2.7691 -2.2895 2.5082 8 6 3.2401 -3.5962 3.0288 9 6 3.6235 -3.7066 4.3687 10 6 4.0612 -4.9043 4.8885 11 6 4.1399 -6.0357 4.0747 12 6 4.5998 -7.2827 4.6077 13 7 4.9702 -8.2705 5.0290 14 6 3.7456 -5.9296 2.6673 15 6 3.8133 -7.0514 1.8183 16 1 4.5528 -7.8183 1.9948 17 6 2.9203 -7.1723 0.7439 18 7 3.1859 -7.9936 -0.2370 19 14 1.3511 -6.1593 0.7149 20 1 1.5732 -4.9252 -0.0805 21 1 0.2593 -6.9554 0.0989 22 1 0.9733 -5.7921 2.1033 23 6 3.2999 -4.6891 2.1784 24 7 2.3785 -2.0419 1.2754 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.9970 0.8922 2.6791 33 1 2.8943 -0.9690 4.2925 34 1 3.5714 -2.8381 5.0086 35 1 4.3484 -4.9674 5.9277 36 1 2.5680 -8.0776 -0.9801 37 1 3.0047 -4.5881 1.1444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242454616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:02 Heat of formation + Delta-G solvation = 112.021002 kcal Electronic energy + Delta-G solvation = -20656.545630 eV Core-core repulsion = 17592.930502 eV Total energy + Delta-G solvation = -3063.615127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94162 -37.90187 -35.87203 -35.06998 -33.94790 -31.39520 -30.77347 -29.69935 -28.58641 -27.56907 -25.62700 -23.71551 -22.09966 -21.44312 -19.79484 -19.45659 -17.69058 -17.35528 -17.01496 -15.52681 -15.14315 -14.58855 -14.40053 -14.24151 -13.68999 -13.44189 -13.11282 -12.99572 -12.88848 -12.68081 -12.59928 -12.34725 -12.22875 -11.86998 -11.72913 -11.62211 -11.38917 -11.32011 -11.04834 -10.91093 -10.50341 -10.44455 -9.99835 -9.83000 -9.35908 -9.20177 -8.43222 -7.88430 -7.40058 -7.22825 -4.75770 1.53293 2.26152 2.54980 2.61608 3.05630 3.10005 3.19498 3.31577 3.84512 3.89045 4.24553 4.33843 4.46599 4.64665 4.82535 4.86353 5.02104 5.17384 5.27486 5.29945 5.34717 5.38139 5.55698 5.65152 5.78600 5.87358 5.90056 6.01411 6.17495 6.22191 6.47458 6.62317 6.79753 6.94151 7.03859 7.24236 7.35774 7.48294 7.56835 7.77982 8.03407 8.11086 8.32328 8.46797 8.77809 9.75824 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.005608 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.384212 B = 4991.526603 C = 6270.471809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.155 3.845 3 C -0.162 4.162 4 N -0.374 5.374 5 C 0.044 3.956 6 C -0.255 4.255 7 C 0.123 3.877 8 C 0.040 3.960 9 C -0.228 4.228 10 C -0.018 4.018 11 C -0.167 4.167 12 C 0.297 3.703 13 N -0.499 5.499 14 C 0.123 3.877 15 C -0.414 4.414 16 H 0.098 0.902 17 C 0.085 3.915 18 N -0.777 5.777 19 Si 0.904 3.096 20 H -0.253 1.253 21 H -0.287 1.287 22 H -0.238 1.238 23 C -0.198 4.198 24 N -0.286 5.286 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.167 0.833 33 H 0.148 0.852 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.293 0.707 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 19.230 -1.088 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.053 3.947 3 C -0.220 4.220 4 N -0.157 5.157 5 C -0.101 4.101 6 C -0.284 4.284 7 C -0.041 4.041 8 C 0.037 3.963 9 C -0.249 4.249 10 C -0.039 4.039 11 C -0.173 4.173 12 C -0.013 4.013 13 N -0.178 5.178 14 C 0.117 3.883 15 C -0.441 4.441 16 H 0.116 0.884 17 C -0.139 4.139 18 N -0.398 5.398 19 Si 0.729 3.271 20 H -0.178 1.178 21 H -0.214 1.214 22 H -0.161 1.161 23 C -0.219 4.219 24 N -0.107 5.107 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.991 17.164 -2.011 18.290 hybrid contribution -0.694 1.123 0.336 1.362 sum -6.684 18.287 -1.675 19.542 Atomic orbital electron populations 1.22244 0.93936 1.03426 1.02703 1.21183 0.94622 0.92562 0.86370 1.22175 1.02375 0.94148 1.03323 1.48818 1.51325 1.07331 1.08236 1.22265 1.02343 0.99577 0.85874 1.21489 1.13352 0.92258 1.01312 1.21142 0.97743 0.94620 0.90634 1.17569 0.97145 0.88210 0.93339 1.20029 1.13287 0.97411 0.94205 1.20455 0.94982 0.91255 0.97186 1.16907 1.19655 0.87488 0.93298 1.25679 0.91505 0.92538 0.91551 1.81032 1.14172 1.11468 1.11123 1.18393 0.88606 0.92214 0.89059 1.19651 1.14046 1.04960 1.05441 0.88392 1.26353 1.00497 0.94316 0.92707 1.69600 1.35434 1.29106 1.05633 0.86384 0.79246 0.79409 0.82111 1.17795 1.21366 1.16096 1.21116 1.09865 0.91944 0.98991 1.77711 1.21178 0.92127 1.19709 0.91515 0.90721 0.91996 0.88112 0.91638 0.91448 0.90218 0.81614 0.83461 0.87435 0.87426 0.89611 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.52 37.16 0.35 -1.12 16 2 C 0.15 1.61 3.93 -67.93 -0.27 1.34 16 3 C -0.16 -1.14 8.83 37.16 0.33 -0.81 16 4 N -0.37 -5.40 3.53 -54.90 -0.19 -5.59 16 5 C 0.04 0.56 10.57 -17.26 -0.18 0.38 16 6 C -0.25 -3.84 10.15 -39.71 -0.40 -4.24 16 7 C 0.12 2.34 6.98 -82.78 -0.58 1.76 16 8 C 0.04 0.84 5.86 -105.02 -0.62 0.22 16 9 C -0.23 -4.28 9.51 -39.19 -0.37 -4.65 16 10 C -0.02 -0.35 9.74 -39.27 -0.38 -0.73 16 11 C -0.17 -3.78 5.95 -104.12 -0.62 -4.40 16 12 C 0.30 6.98 14.35 -22.47 -0.32 6.66 16 13 N -0.50 -12.15 18.54 41.84 0.78 -11.38 16 14 C 0.12 2.99 5.26 -104.68 -0.55 2.44 16 15 C -0.41 -10.86 9.03 -37.85 -0.34 -11.20 16 16 H 0.10 2.77 7.65 -52.49 -0.40 2.36 16 17 C 0.09 2.15 5.41 -17.30 -0.09 2.06 16 18 N -0.78 -19.84 13.92 55.56 0.77 -19.07 16 19 Si 0.90 20.19 24.53 -169.99 -4.17 16.02 16 20 H -0.25 -5.60 6.72 56.52 0.38 -5.22 16 21 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.24 -5.45 6.86 56.52 0.39 -5.07 16 23 C -0.20 -4.59 6.80 -38.56 -0.26 -4.86 16 24 N -0.29 -5.49 12.18 33.42 0.41 -5.09 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.39 7.14 -51.93 -0.37 0.02 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.17 1.39 7.24 -52.49 -0.38 1.01 16 33 H 0.15 1.88 7.27 -52.49 -0.38 1.49 16 34 H 0.11 1.68 6.92 -52.49 -0.36 1.32 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 37 H 0.12 2.80 4.50 -52.49 -0.24 2.56 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -29.58 321.17 -6.14 -35.72 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.26 Total: 1.70 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -4.31 Total: -17.15 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 1.76 Total: -41.13 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.17 Total: 16.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.58 -6.14 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242454616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.741 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds