Wall clock time and date at job start Tue Mar 31 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47006 * 2 1 4 4 N 1.46500 * 109.47080 * 120.00267 * 2 1 3 5 5 N 1.40040 * 126.12865 * 285.31903 * 4 2 1 6 6 C 1.30971 * 108.79740 * 180.25427 * 5 4 2 7 7 C 1.39294 * 108.75003 * 359.77895 * 6 5 4 8 8 C 1.36568 * 126.12876 * 105.18946 * 4 2 1 9 9 C 1.47421 * 126.47317 * 0.02562 * 8 4 2 10 10 C 1.40220 * 119.51779 * 152.22717 * 9 8 4 11 11 C 1.35888 * 121.16497 * 180.02562 * 10 9 8 12 12 C 1.41111 * 120.13512 * 359.97231 * 11 10 9 13 13 C 1.40321 * 120.46934 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00217 * 208.36287 * 13 12 11 15 15 C 1.40282 * 120.00002 * 28.36555 * 13 12 11 16 16 N 1.30644 * 119.99910 * 195.70429 * 15 13 12 17 17 Si 1.86805 * 119.99931 * 15.70166 * 15 13 12 18 18 H 1.48505 * 109.46810 * 270.00115 * 17 15 13 19 19 H 1.48496 * 109.47159 * 30.00295 * 17 15 13 20 20 H 1.48497 * 109.46934 * 150.00289 * 17 15 13 21 21 C 1.46697 * 119.06143 * 0.27440 * 12 11 10 22 22 C 1.43199 * 120.55155 * 179.72556 * 21 12 11 23 23 N 5.48503 * 80.02806 * 230.38337 * 2 1 3 24 24 C 1.38962 * 118.89146 * 359.45066 * 21 12 11 25 25 H 1.08998 * 109.46942 * 299.99815 * 1 2 3 26 26 H 1.09005 * 109.46718 * 59.99843 * 1 2 3 27 27 H 1.08996 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46942 * 240.00185 * 2 1 3 29 29 H 1.08999 * 109.46910 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47553 * 300.00214 * 3 2 1 31 31 H 1.08998 * 109.47119 * 60.00293 * 3 2 1 32 32 H 1.08004 * 125.62036 * 179.77362 * 6 5 4 33 33 H 1.08001 * 126.16933 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.42138 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.93200 * 179.97438 * 11 10 9 36 36 H 0.97004 * 120.00456 * 354.88414 * 16 15 13 37 37 H 1.08005 * 120.10419 * 180.26032 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 2.0119 -0.1850 2.5020 6 6 2.5308 -1.0810 3.3041 7 6 2.8880 -2.1995 2.5547 8 6 2.5593 -1.9440 1.2378 9 6 2.7603 -2.8502 0.0926 10 6 3.7948 -3.7959 0.1333 11 6 4.0105 -4.6473 -0.9037 12 6 3.1875 -4.5920 -2.0486 13 6 3.4036 -5.4681 -3.1232 14 1 3.1319 -5.1709 -4.1253 15 6 3.9725 -6.7301 -2.8958 16 7 4.4555 -7.4186 -3.8956 17 14 4.0396 -7.4260 -1.1636 18 1 5.3084 -7.0118 -0.5125 19 1 2.8891 -6.9111 -0.3784 20 1 3.9745 -8.9084 -1.2228 21 6 2.1063 -3.6020 -2.1019 22 6 1.2558 -3.5140 -3.2506 23 7 0.5803 -3.4447 -4.1614 24 6 1.9176 -2.7548 -1.0166 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.6605 -0.9706 4.3706 33 1 3.3399 -3.1037 2.9349 34 1 4.4320 -3.8482 1.0037 35 1 4.8135 -5.3677 -0.8514 36 1 4.3547 -7.0917 -4.8033 37 1 1.1249 -2.0215 -1.0333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242556651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:16 Heat of formation + Delta-G solvation = 105.877992 kcal Electronic energy + Delta-G solvation = -21069.301065 eV Core-core repulsion = 18005.419557 eV Total energy + Delta-G solvation = -3063.881508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65915 -38.07986 -35.52471 -35.42241 -34.42244 -31.74808 -30.53813 -29.65078 -28.62282 -27.28663 -25.44596 -23.20453 -22.25540 -21.51356 -20.36213 -19.35994 -18.71801 -17.58568 -15.92503 -15.41712 -14.95348 -14.79177 -14.52661 -14.20695 -14.02130 -13.36586 -13.25495 -13.07165 -12.88939 -12.74406 -12.34619 -12.21894 -12.09482 -12.00098 -11.88920 -11.52828 -11.34149 -11.21405 -11.13989 -10.87448 -10.55614 -10.30713 -10.04006 -9.87114 -9.47999 -9.04226 -8.39780 -8.16688 -7.93523 -7.49013 -5.08622 1.67677 1.86668 2.62150 2.83305 2.94217 3.10052 3.25579 3.35829 3.61080 3.65285 3.91733 4.24767 4.63154 4.94454 4.95823 5.01440 5.10917 5.26268 5.27801 5.46795 5.54338 5.69546 5.70871 5.74176 5.82471 5.96799 6.13096 6.16328 6.23638 6.26963 6.32417 6.44241 6.79237 6.90444 7.00808 7.11852 7.13335 7.28714 7.38024 7.55340 7.80525 7.90234 8.14368 8.19496 8.50815 9.41968 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.005736 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.525999 B = 4880.692783 C = 5985.712290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 C -0.154 4.154 4 N -0.370 5.370 5 N -0.318 5.318 6 C 0.044 3.956 7 C -0.297 4.297 8 C 0.179 3.821 9 C -0.198 4.198 10 C -0.008 4.008 11 C -0.242 4.242 12 C 0.133 3.867 13 C -0.455 4.455 14 H 0.087 0.913 15 C 0.038 3.962 16 N -0.769 5.769 17 Si 1.073 2.927 18 H -0.267 1.267 19 H -0.252 1.252 20 H -0.283 1.283 21 C -0.174 4.174 22 C 0.294 3.706 23 N -0.493 5.493 24 C -0.001 4.001 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.173 0.827 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.296 0.704 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 7.099 9.046 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 C -0.211 4.211 4 N -0.154 5.154 5 N -0.140 5.140 6 C -0.140 4.140 7 C -0.326 4.326 8 C 0.052 3.948 9 C -0.202 4.202 10 C -0.028 4.028 11 C -0.260 4.260 12 C 0.127 3.873 13 C -0.481 4.481 14 H 0.105 0.895 15 C -0.187 4.187 16 N -0.388 5.388 17 Si 0.896 3.104 18 H -0.194 1.194 19 H -0.176 1.176 20 H -0.210 1.210 21 C -0.179 4.179 22 C -0.016 4.016 23 N -0.172 5.172 24 C -0.023 4.023 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.190 0.810 33 H 0.159 0.841 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.495 7.168 8.185 10.982 hybrid contribution 0.169 0.428 -0.772 0.899 sum -1.326 7.596 7.413 10.697 Atomic orbital electron populations 1.22235 0.94121 1.02999 1.02994 1.21461 0.94810 0.94176 0.85023 1.22013 1.01790 0.94492 1.02854 1.49007 1.48871 1.11484 1.06012 1.77107 1.25872 1.23413 0.87570 1.23465 0.98744 0.92437 0.99399 1.21493 1.17411 1.02234 0.91486 1.20102 0.94763 0.85155 0.94747 1.17042 1.04804 1.04043 0.94261 1.20337 0.93885 0.92089 0.96531 1.20732 1.03494 1.05231 0.96578 1.18563 0.87360 0.89633 0.91766 1.21006 1.31219 0.99702 0.96186 0.89535 1.27798 0.89309 0.93944 1.07684 1.70445 1.25158 1.40544 1.02627 0.83610 0.79604 0.75752 0.71406 1.19380 1.17557 1.21041 1.16632 1.00509 1.08889 0.91893 1.25658 0.91930 0.91614 0.92438 1.81069 1.12807 1.11740 1.11554 1.20893 0.95665 0.94671 0.91080 0.91445 0.90875 0.91878 0.87383 0.92112 0.91179 0.91197 0.81031 0.84118 0.87264 0.86370 0.89207 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.08 37.16 0.34 -1.73 16 2 C 0.15 2.05 2.85 -67.93 -0.19 1.86 16 3 C -0.15 -1.85 9.24 37.16 0.34 -1.51 16 4 N -0.37 -6.06 3.40 -50.69 -0.17 -6.23 16 5 N -0.32 -5.23 12.14 30.53 0.37 -4.86 16 6 C 0.04 0.64 11.97 -17.53 -0.21 0.43 16 7 C -0.30 -4.69 10.24 -39.24 -0.40 -5.09 16 8 C 0.18 3.09 6.68 -82.07 -0.55 2.54 16 9 C -0.20 -3.61 5.79 -104.89 -0.61 -4.22 16 10 C -0.01 -0.15 9.43 -39.68 -0.37 -0.53 16 11 C -0.24 -4.79 7.12 -39.34 -0.28 -5.07 16 12 C 0.13 2.91 5.33 -104.61 -0.56 2.35 16 13 C -0.46 -10.63 8.91 -38.03 -0.34 -10.97 16 14 H 0.09 2.17 7.60 -52.49 -0.40 1.77 16 15 C 0.04 0.86 5.45 -17.29 -0.09 0.76 16 16 N -0.77 -17.96 13.64 55.57 0.76 -17.20 16 17 Si 1.07 20.45 24.82 -169.99 -4.22 16.23 16 18 H -0.27 -4.67 6.46 56.52 0.37 -4.31 16 19 H -0.25 -4.73 6.92 56.52 0.39 -4.34 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.17 -3.63 5.93 -104.29 -0.62 -4.25 16 22 C 0.29 6.43 14.33 -22.47 -0.32 6.11 16 23 N -0.49 -11.21 18.54 41.84 0.78 -10.43 16 24 C 0.00 -0.03 7.99 -38.79 -0.31 -0.33 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.85 7.35 -51.93 -0.38 0.47 16 28 H 0.11 1.57 5.32 -51.93 -0.28 1.29 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.07 0.86 8.06 -51.93 -0.42 0.45 16 32 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.14 1.97 7.91 -52.49 -0.41 1.55 16 34 H 0.11 1.70 7.60 -52.49 -0.40 1.30 16 35 H 0.12 2.25 4.19 -52.48 -0.22 2.03 16 36 H 0.30 6.75 8.73 -40.82 -0.36 6.39 16 37 H 0.11 1.83 4.48 -52.48 -0.23 1.59 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -25.31 315.22 -5.97 -31.28 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.06 Total: 6.10 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -4.18 Total: -19.64 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 1.73 Total: -38.72 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.22 Total: 16.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.31 -5.97 -31.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242556651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.155 kcal (2) G-P(sol) polarization free energy of solvation -25.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds