Wall clock time and date at job start Tue Mar 31 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47435 * 2 1 4 4 N 1.46503 * 109.47068 * 184.83132 * 3 2 1 5 5 N 1.40041 * 126.13006 * 275.87625 * 4 3 2 6 6 C 1.30971 * 108.79857 * 179.97438 * 5 4 3 7 7 C 1.39294 * 108.75032 * 359.75994 * 6 5 4 8 8 C 1.36563 * 126.12768 * 95.85650 * 4 3 2 9 9 C 1.47419 * 126.47790 * 359.97438 * 8 4 3 10 10 C 1.40220 * 119.52514 * 157.43882 * 9 8 4 11 11 C 1.35887 * 121.16921 * 180.02562 * 10 9 8 12 12 C 1.41111 * 120.13330 * 0.02595 * 11 10 9 13 13 C 1.40326 * 120.46539 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99826 * 154.48751 * 13 12 11 15 15 C 1.40280 * 120.00194 * 334.47760 * 13 12 11 16 16 N 1.30651 * 119.99974 * 334.48420 * 15 13 12 17 17 Si 1.86800 * 119.99630 * 154.47793 * 15 13 12 18 18 H 1.48503 * 109.46693 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47202 * 299.99991 * 17 15 13 20 20 H 1.48500 * 109.47131 * 60.00806 * 17 15 13 21 21 C 1.46686 * 119.06541 * 0.23172 * 12 11 10 22 22 C 1.43203 * 120.55462 * 179.72764 * 21 12 11 23 23 N 5.21290 * 66.39114 * 279.26009 * 2 1 3 24 24 C 1.38976 * 118.89315 * 359.46405 * 21 12 11 25 25 H 1.08998 * 109.47668 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47104 * 300.00339 * 1 2 3 27 27 H 1.09011 * 109.47267 * 59.99547 * 1 2 3 28 28 H 1.09010 * 109.46548 * 240.00018 * 2 1 3 29 29 H 1.08999 * 109.47070 * 120.00757 * 2 1 3 30 30 H 1.09002 * 109.46593 * 64.83671 * 3 2 1 31 31 H 1.09000 * 109.47590 * 304.83202 * 3 2 1 32 32 H 1.07997 * 125.61912 * 180.02562 * 6 5 4 33 33 H 1.08008 * 126.17275 * 180.25349 * 7 6 5 34 34 H 1.08004 * 119.41397 * 359.97438 * 10 9 8 35 35 H 1.08004 * 119.93192 * 180.02562 * 11 10 9 36 36 H 0.96995 * 119.99824 * 354.38448 * 16 15 13 37 37 H 1.08000 * 120.10665 * 180.26580 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5004 1.4440 -0.1163 5 7 4.4127 1.2975 0.9360 6 6 5.6283 1.3491 0.4510 7 6 5.5528 1.5247 -0.9287 8 6 4.2161 1.5882 -1.2705 9 6 3.6658 1.7699 -2.6260 10 6 4.4573 2.3645 -3.6191 11 6 3.9836 2.5488 -4.8793 12 6 2.6741 2.1406 -5.2106 13 6 2.1777 2.3280 -6.5097 14 1 1.3933 1.6878 -6.8856 15 6 2.7001 3.3469 -7.3200 16 7 3.2450 4.4013 -6.7738 17 14 2.6168 3.1961 -9.1801 18 1 3.2334 4.3955 -9.8020 19 1 3.3535 1.9812 -9.6117 20 1 1.1977 3.0919 -9.6052 21 6 1.8371 1.5229 -4.1764 22 6 0.5015 1.1022 -4.4762 23 7 -0.5578 0.7686 -4.7143 24 6 2.3638 1.3477 -2.9023 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7492 1.9306 0.9302 31 1 1.6078 1.9808 -0.8435 32 1 6.5388 1.2647 1.0256 33 1 6.3888 1.6002 -1.6084 34 1 5.4609 2.6824 -3.3778 35 1 4.6107 3.0085 -5.6289 36 1 3.2160 4.5186 -5.8114 37 1 1.7662 0.8911 -2.1272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242845211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:18 Heat of formation + Delta-G solvation = 99.267824 kcal Electronic energy + Delta-G solvation = -20959.552979 eV Core-core repulsion = 17895.384833 eV Total energy + Delta-G solvation = -3064.168147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57399 -38.04308 -35.46384 -35.36904 -34.55232 -31.42322 -30.86720 -30.05138 -28.49836 -26.10664 -25.59399 -22.76482 -22.12374 -21.61620 -20.33286 -19.64275 -18.58718 -17.32384 -16.01011 -15.64715 -14.87451 -14.72480 -14.59811 -14.21737 -13.91604 -13.43409 -13.17878 -13.00371 -12.84491 -12.62737 -12.42255 -12.05597 -11.98463 -11.88600 -11.72207 -11.51983 -11.32349 -11.23371 -11.04206 -10.78220 -10.65844 -10.30749 -10.12774 -9.92516 -9.54997 -9.04710 -8.36036 -8.16077 -7.82571 -7.47072 -5.01540 1.76181 1.98219 2.67165 2.88732 2.92248 3.01601 3.12595 3.39361 3.63441 3.67336 3.98795 4.21250 4.73871 4.88686 5.05217 5.07512 5.13461 5.23566 5.39519 5.48802 5.55678 5.57946 5.69387 5.87141 5.97026 6.02340 6.10194 6.23555 6.26866 6.35739 6.43286 6.57784 6.82251 7.05745 7.13127 7.15716 7.23226 7.35551 7.50208 7.61836 7.68064 8.09101 8.20034 8.22607 8.57449 9.42057 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.005287 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.873616 B = 5294.711171 C = 6551.389767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.127 3.873 4 N -0.378 5.378 5 N -0.325 5.325 6 C 0.046 3.954 7 C -0.303 4.303 8 C 0.184 3.816 9 C -0.204 4.204 10 C -0.020 4.020 11 C -0.215 4.215 12 C 0.128 3.872 13 C -0.454 4.454 14 H 0.089 0.911 15 C 0.035 3.965 16 N -0.748 5.748 17 Si 1.067 2.933 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.270 1.270 21 C -0.187 4.187 22 C 0.295 3.705 23 N -0.498 5.498 24 C -0.006 4.006 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.173 0.827 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.309 0.691 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -1.977 5.532 6.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C 0.006 3.994 4 N -0.160 5.160 5 N -0.146 5.146 6 C -0.138 4.138 7 C -0.332 4.332 8 C 0.058 3.942 9 C -0.208 4.208 10 C -0.040 4.040 11 C -0.234 4.234 12 C 0.122 3.878 13 C -0.479 4.479 14 H 0.107 0.893 15 C -0.193 4.193 16 N -0.367 5.367 17 Si 0.888 3.112 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.195 1.195 21 C -0.192 4.192 22 C -0.015 4.015 23 N -0.177 5.177 24 C -0.028 4.028 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.190 0.810 33 H 0.158 0.842 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.474 -1.805 4.927 5.269 hybrid contribution 0.568 -0.549 0.910 1.205 sum 1.042 -2.354 5.837 6.380 Atomic orbital electron populations 1.21718 0.94505 1.02384 1.02257 1.21986 0.96487 0.96322 1.03380 1.21880 0.75237 0.98117 1.04205 1.48830 1.05553 1.57486 1.04141 1.77152 0.98848 1.27138 1.11489 1.23458 0.95606 1.00178 0.94526 1.21462 0.95076 1.21090 0.95522 1.20149 0.90939 0.96233 0.86858 1.17024 0.96023 1.17499 0.90244 1.20333 0.97410 0.94104 0.92191 1.20763 0.95672 1.10377 0.96594 1.18514 0.90271 0.88262 0.90738 1.20963 1.16782 1.13053 0.97110 0.89293 1.27475 0.90867 0.91458 1.09494 1.70416 1.24770 1.23181 1.18375 0.83583 0.78578 0.78200 0.70867 1.19084 1.19165 1.19463 1.16611 0.87765 1.20263 0.94608 1.25675 0.92476 0.91412 0.91894 1.81041 1.12956 1.14233 1.09491 1.21042 0.93493 0.93937 0.94283 0.92071 0.92363 0.92187 0.90987 0.91015 0.89547 0.88155 0.81009 0.84191 0.87747 0.86439 0.87672 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.14 -1.91 5.49 -26.73 -0.15 -2.06 16 3 C 0.13 1.86 5.58 -4.04 -0.02 1.84 16 4 N -0.38 -6.56 3.66 -57.14 -0.21 -6.77 16 5 N -0.33 -5.70 12.54 30.53 0.38 -5.32 16 6 C 0.05 0.73 11.97 -17.53 -0.21 0.52 16 7 C -0.30 -5.09 10.22 -39.23 -0.40 -5.49 16 8 C 0.18 3.37 6.74 -82.07 -0.55 2.82 16 9 C -0.20 -3.92 5.83 -104.89 -0.61 -4.54 16 10 C -0.02 -0.39 9.43 -39.68 -0.37 -0.76 16 11 C -0.21 -4.48 7.88 -39.34 -0.31 -4.79 16 12 C 0.13 2.86 5.46 -104.61 -0.57 2.29 16 13 C -0.45 -10.29 8.47 -38.03 -0.32 -10.61 16 14 H 0.09 2.06 7.45 -52.49 -0.39 1.67 16 15 C 0.03 0.74 4.94 -17.29 -0.09 0.66 16 16 N -0.75 -16.54 12.32 55.57 0.68 -15.86 16 17 Si 1.07 18.34 30.01 -169.99 -5.10 13.24 16 18 H -0.27 -4.54 7.11 56.52 0.40 -4.13 16 19 H -0.27 -4.42 7.11 56.52 0.40 -4.02 16 20 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 21 C -0.19 -3.99 5.93 -104.29 -0.62 -4.61 16 22 C 0.30 6.50 14.30 -22.48 -0.32 6.18 16 23 N -0.50 -11.28 18.54 41.83 0.78 -10.50 16 24 C -0.01 -0.11 8.13 -38.79 -0.32 -0.43 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 28 H 0.07 1.06 7.06 -51.92 -0.37 0.70 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.50 5.70 -51.93 -0.30 1.21 16 32 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.14 2.11 7.73 -52.48 -0.41 1.70 16 34 H 0.10 1.79 7.40 -52.48 -0.39 1.40 16 35 H 0.12 2.47 6.50 -52.48 -0.34 2.12 16 36 H 0.31 6.93 6.69 -40.82 -0.27 6.66 16 37 H 0.11 1.95 3.46 -52.49 -0.18 1.77 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -25.11 319.40 -7.12 -32.23 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.97 Total: 8.50 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -4.49 Total: -20.34 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 1.63 Total: -38.45 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.10 Total: 13.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.11 -7.12 -32.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242845211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.497 kcal (2) G-P(sol) polarization free energy of solvation -25.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds