Wall clock time and date at job start Tue Mar 31 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 H 1.09002 * 109.47078 * 54.73216 * 3 2 1 5 5 C 1.50693 * 109.47165 * 174.73274 * 3 2 1 6 6 H 1.08000 * 120.00312 * 120.18812 * 5 3 2 7 7 C 1.37889 * 119.99787 * 300.18429 * 5 3 2 8 8 N 1.31512 * 119.99884 * 166.64216 * 7 5 3 9 9 Si 1.86798 * 119.99941 * 346.64916 * 7 5 3 10 10 H 1.48506 * 109.46823 * 264.65581 * 9 7 5 11 11 H 1.48500 * 109.47100 * 24.65496 * 9 7 5 12 12 H 1.48496 * 109.46988 * 144.65643 * 9 7 5 13 13 N 1.46903 * 109.47168 * 294.73383 * 3 2 1 14 14 C 1.46891 * 111.00400 * 101.60856 * 13 3 2 15 15 C 1.52998 * 109.47674 * 183.31973 * 14 13 3 16 16 C 1.52993 * 109.47599 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47120 * 180.02562 * 16 15 14 18 18 C 1.38260 * 119.98901 * 269.72342 * 17 16 15 19 19 C 1.38217 * 120.02686 * 179.76810 * 18 17 16 20 20 C 1.38238 * 120.00994 * 0.50779 * 19 18 17 21 21 C 1.38331 * 119.98950 * 359.74533 * 20 19 18 22 22 Cl 1.73599 * 120.01831 * 180.02562 * 21 20 19 23 23 C 1.38184 * 119.99347 * 89.99903 * 17 16 15 24 24 H 1.08996 * 109.46877 * 306.71287 * 1 2 3 25 25 H 1.09002 * 109.46681 * 66.71509 * 1 2 3 26 26 H 1.09000 * 109.47055 * 186.70668 * 1 2 3 27 27 H 1.08996 * 109.47351 * 240.00124 * 2 1 3 28 28 H 1.08994 * 109.46900 * 119.99838 * 2 1 3 29 29 H 0.96997 * 120.00347 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99459 * 225.56236 * 13 3 2 31 31 H 1.09003 * 109.47403 * 303.31905 * 14 13 3 32 32 H 1.09004 * 109.47481 * 63.32204 * 14 13 3 33 33 H 1.08998 * 109.46861 * 300.00815 * 15 14 13 34 34 H 1.09006 * 109.46881 * 59.99275 * 15 14 13 35 35 H 1.09000 * 109.46972 * 300.00092 * 16 15 14 36 36 H 1.08994 * 109.47040 * 60.00057 * 16 15 14 37 37 H 1.07997 * 119.99186 * 359.97438 * 18 17 16 38 38 H 1.08005 * 119.99960 * 180.25311 * 19 18 17 39 39 H 1.07999 * 120.00934 * 179.76715 * 20 19 18 40 40 H 1.08000 * 120.01417 * 359.95740 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9829 0.8391 5 6 3.5413 1.4446 0.1304 6 1 4.1499 1.8906 -0.6422 7 6 4.1380 0.8770 1.2364 8 7 5.4316 0.6400 1.2366 9 14 3.1089 0.4445 2.7341 10 1 3.1752 1.5551 3.7177 11 1 1.6983 0.2326 2.3211 12 1 3.6351 -0.7980 3.3542 13 7 1.6569 2.0974 -1.2580 14 6 0.4923 2.9712 -1.0632 15 6 0.0730 3.5695 -2.4075 16 6 -1.1395 4.4801 -2.2046 17 6 -1.5528 5.0689 -3.5289 18 6 -1.0165 6.2725 -3.9476 19 6 -1.3914 6.8109 -5.1641 20 6 -2.3107 6.1512 -5.9582 21 6 -2.8516 4.9496 -5.5375 22 17 -4.0057 4.1202 -6.5345 23 6 -2.4719 4.4085 -4.3218 24 1 -0.3633 0.6143 0.8238 25 1 -0.3633 0.4063 -0.9440 26 1 -0.3633 -1.0206 0.1200 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8513 0.2404 2.0144 30 1 2.4326 2.6105 -1.6493 31 1 -0.3328 2.3904 -0.6509 32 1 0.7518 3.7742 -0.3733 33 1 0.8982 4.1502 -2.8199 34 1 -0.1864 2.7665 -3.0975 35 1 -1.9647 3.8997 -1.7920 36 1 -0.8795 5.2830 -1.5149 37 1 -0.3019 6.7907 -3.3253 38 1 -0.9691 7.7491 -5.4926 39 1 -2.6065 6.5738 -6.9071 40 1 -2.8936 3.4702 -3.9930 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:02 Heat of formation + Delta-G solvation = -16.285484 kcal Electronic energy + Delta-G solvation = -19038.420593 eV Core-core repulsion = 16070.349173 eV Total energy + Delta-G solvation = -2968.071420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39399 -38.50537 -37.47891 -35.78751 -34.23575 -32.96861 -31.66430 -30.81202 -28.86100 -25.96188 -24.21182 -23.60372 -22.67895 -21.91120 -21.26832 -18.93055 -17.86518 -17.35072 -16.71687 -16.42995 -15.90299 -15.78717 -15.07711 -15.02521 -14.66028 -14.57485 -14.31818 -14.04345 -13.86254 -13.68688 -13.12216 -13.01437 -12.71499 -12.62551 -12.58215 -12.34185 -12.28028 -12.09630 -11.92182 -11.75945 -11.50627 -11.46035 -11.11825 -10.91744 -10.57929 -9.82413 -9.58960 -9.04826 -8.32803 -6.33694 0.21328 0.33107 1.16742 1.33652 1.38213 1.48376 2.34641 2.67186 3.01932 3.52911 3.80029 3.91065 4.11541 4.17685 4.33376 4.44127 4.46213 4.48763 4.50735 4.55293 4.63021 4.71395 4.82775 4.88376 4.91896 4.94772 5.07461 5.22094 5.24348 5.29176 5.32413 5.36180 5.41982 5.47016 5.59468 5.64267 5.81484 5.89505 6.04811 6.51323 6.69657 6.89903 7.32776 8.83686 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029920 B = 0.002958 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.615012 B = 9464.693092 C = 9922.653366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.198 3.802 4 H 0.003 0.997 5 C -0.539 4.539 6 H 0.035 0.965 7 C 0.018 3.982 8 N -0.943 5.943 9 Si 0.925 3.075 10 H -0.281 1.281 11 H -0.213 1.213 12 H -0.287 1.287 13 N -0.684 5.684 14 C 0.056 3.944 15 C -0.097 4.097 16 C -0.074 4.074 17 C -0.070 4.070 18 C -0.121 4.121 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.046 4.046 22 Cl -0.078 7.078 23 C -0.120 4.120 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.265 0.735 30 H 0.332 0.668 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.141 0.859 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.917 11.410 -11.138 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.088 3.912 4 H 0.020 0.980 5 C -0.577 4.577 6 H 0.054 0.946 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.749 3.251 10 H -0.208 1.208 11 H -0.136 1.136 12 H -0.213 1.213 13 N -0.314 5.314 14 C -0.073 4.073 15 C -0.135 4.135 16 C -0.112 4.112 17 C -0.070 4.070 18 C -0.139 4.139 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.072 4.072 22 Cl -0.049 7.049 23 C -0.139 4.139 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.159 0.841 38 H 0.173 0.827 39 H 0.164 0.836 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.267 10.722 -11.357 25.586 hybrid contribution 0.801 0.247 1.060 1.351 sum -19.465 10.968 -10.297 24.601 Atomic orbital electron populations 1.21753 0.95213 1.01023 1.01519 1.21912 0.95847 0.97932 0.99717 1.19298 0.92159 0.92108 0.87642 0.97964 1.21625 0.91971 1.38212 1.05873 0.94637 1.25820 0.95855 0.94505 1.01852 1.70110 1.12687 1.44466 1.30974 0.86315 0.82483 0.77548 0.78800 1.20792 1.13563 1.21278 1.60541 1.09020 1.34224 1.27633 1.22153 0.94025 0.94399 0.96772 1.21402 0.97162 0.98362 0.96586 1.20564 0.98069 0.99320 0.93231 1.19965 0.95556 0.94883 0.96643 1.21474 0.99827 0.95429 0.97136 1.21430 0.96422 1.00728 0.93748 1.21301 0.97816 0.93731 1.01454 1.21093 0.96495 0.95811 0.93821 1.98365 1.58790 1.78465 1.69273 1.21099 0.98720 1.00857 0.93217 0.93511 0.91740 0.92693 0.93757 0.94005 0.92574 0.85094 0.90722 0.96322 0.92418 0.91841 0.89950 0.89805 0.84077 0.82655 0.83623 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.64 71.98 0.62 -3.95 16 2 C -0.12 -4.91 4.73 30.60 0.14 -4.77 16 3 C 0.20 9.00 1.76 44.17 0.08 9.07 16 4 H 0.00 0.13 6.67 -2.39 -0.02 0.11 16 5 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 6 H 0.04 2.21 7.65 -2.91 -0.02 2.19 16 7 C 0.02 1.04 5.35 84.66 0.45 1.49 16 8 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 9 Si 0.92 42.92 25.68 68.60 1.76 44.68 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.21 -8.85 5.15 99.48 0.51 -8.33 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.68 -26.73 6.09 -495.46 -3.02 -29.75 16 14 C 0.06 1.69 5.06 86.30 0.44 2.13 16 15 C -0.10 -2.35 5.49 30.59 0.17 -2.18 16 16 C -0.07 -1.39 5.35 29.85 0.16 -1.23 16 17 C -0.07 -1.32 5.13 -19.87 -0.10 -1.42 16 18 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 19 C -0.11 -1.54 10.05 22.26 0.22 -1.32 16 20 C -0.12 -2.00 9.83 22.29 0.22 -1.79 16 21 C -0.05 -0.87 6.32 22.33 0.14 -0.73 16 22 Cl -0.08 -1.43 28.96 -2.72 -0.08 -1.51 16 23 C -0.12 -2.35 9.49 22.29 0.21 -2.14 16 24 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 25 H 0.06 2.02 6.88 -2.39 -0.02 2.00 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.04 1.85 4.10 -2.39 -0.01 1.84 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.33 13.64 7.94 -89.69 -0.71 12.92 16 31 H 0.07 2.16 6.05 -2.39 -0.01 2.14 16 32 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -64.24 334.83 2.28 -61.96 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.12 Total: 21.79 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.20 Total: -38.74 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.72 Total: -88.17 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.76 Total: 44.68 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -64.24 2.28 -61.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.670 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds