Wall clock time and date at job start Tue Mar 31 2020 05:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47019 * 2 1 4 4 H 1.08999 * 109.46720 * 304.50912 * 3 2 1 5 5 C 1.50698 * 109.47082 * 184.51232 * 3 2 1 6 6 H 1.07998 * 120.00026 * 244.50585 * 5 3 2 7 7 C 1.37881 * 120.00118 * 64.50268 * 5 3 2 8 8 N 1.31512 * 120.00023 * 11.70721 * 7 5 3 9 9 Si 1.86804 * 119.99991 * 191.70493 * 7 5 3 10 10 H 1.48500 * 109.46901 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47350 * 300.00496 * 9 7 5 12 12 H 1.48507 * 109.46816 * 60.00343 * 9 7 5 13 13 N 1.46898 * 109.47261 * 64.50937 * 3 2 1 14 14 C 1.46903 * 111.00086 * 219.80951 * 13 3 2 15 15 C 1.53003 * 109.46731 * 303.70090 * 14 13 3 16 16 C 1.52994 * 109.47156 * 63.69709 * 14 13 3 17 17 C 1.50700 * 109.47286 * 183.70233 * 14 13 3 18 18 C 1.38245 * 119.98283 * 359.72103 * 17 14 13 19 19 C 1.38219 * 120.00909 * 179.72960 * 18 17 14 20 20 C 1.38352 * 119.98721 * 0.54832 * 19 18 17 21 21 Cl 1.73599 * 120.01419 * 179.70595 * 20 19 18 22 22 C 1.38359 * 119.97309 * 359.72612 * 20 19 18 23 23 C 1.38213 * 119.98386 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47400 * 184.64304 * 1 2 3 25 25 H 1.08996 * 109.47511 * 304.64896 * 1 2 3 26 26 H 1.09004 * 109.47206 * 64.64376 * 1 2 3 27 27 H 1.08994 * 109.47720 * 240.00013 * 2 1 3 28 28 H 1.09004 * 109.47056 * 119.99518 * 2 1 3 29 29 H 0.96993 * 119.99953 * 357.33974 * 8 7 5 30 30 H 1.00902 * 110.99598 * 95.85875 * 13 3 2 31 31 H 1.08999 * 109.47497 * 66.70841 * 15 14 13 32 32 H 1.09001 * 109.47019 * 186.70651 * 15 14 13 33 33 H 1.08997 * 109.47194 * 306.70132 * 15 14 13 34 34 H 1.09006 * 109.46948 * 62.26801 * 16 14 13 35 35 H 1.08996 * 109.47369 * 182.26423 * 16 14 13 36 36 H 1.09001 * 109.47164 * 302.26847 * 16 14 13 37 37 H 1.08001 * 119.99456 * 0.02562 * 18 17 14 38 38 H 1.08001 * 120.00679 * 180.27543 * 19 18 17 39 39 H 1.07991 * 120.00897 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.99313 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4440 -0.1118 6 1 4.1443 1.8249 0.7003 7 6 4.1499 0.9591 -1.2508 8 7 3.4315 0.7113 -2.3242 9 14 5.9928 0.6543 -1.2694 10 1 6.3953 0.1363 -2.6017 11 1 6.7078 1.9266 -0.9957 12 1 6.3400 -0.3432 -0.2255 13 7 1.6412 2.1029 1.2501 14 6 1.2246 3.4898 1.0033 15 6 2.3556 4.2448 0.3019 16 6 -0.0212 3.4978 0.1153 17 6 0.9107 4.1612 2.3155 18 6 1.0332 3.4567 3.4986 19 6 0.7507 4.0736 4.7029 20 6 0.3345 5.3929 4.7231 21 17 -0.0278 6.1660 6.2346 22 6 0.2066 6.0956 3.5382 23 6 0.4953 5.4795 2.3351 24 1 -0.3634 -1.0242 0.0832 25 1 -0.3634 0.5842 0.8454 26 1 -0.3634 0.4401 -0.9287 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.4695 0.8329 -2.3026 30 1 2.3838 2.0644 1.9322 31 1 2.5023 3.8336 -0.6968 32 1 2.0950 5.3004 0.2255 33 1 3.2751 4.1384 0.8774 34 1 -0.8388 2.9948 0.6320 35 1 -0.3068 4.5272 -0.1009 36 1 0.1942 2.9768 -0.8176 37 1 1.3542 2.4257 3.4824 38 1 0.8507 3.5246 5.6275 39 1 -0.1186 7.1253 3.5533 40 1 0.3952 6.0278 1.4100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:09 Heat of formation + Delta-G solvation = 3.822241 kcal Electronic energy + Delta-G solvation = -20446.409490 eV Core-core repulsion = 17479.210006 eV Total energy + Delta-G solvation = -2967.199484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77095 -37.48016 -36.30180 -34.11472 -31.62705 -31.09949 -29.94332 -28.82153 -26.67842 -25.72603 -23.22534 -22.63995 -22.38014 -20.02782 -18.76642 -17.51868 -16.84163 -15.68313 -15.11848 -14.37344 -14.12877 -13.88435 -13.77297 -13.46845 -13.36771 -13.09718 -12.67516 -12.44442 -12.21606 -11.99089 -11.74880 -11.61036 -11.27148 -11.23029 -11.06390 -10.79506 -10.75751 -10.64407 -10.47172 -10.25936 -10.14337 -9.84883 -9.62180 -8.93883 -8.88600 -8.41900 -8.24733 -7.38942 -6.38067 -4.11786 1.25954 1.39864 2.14266 3.38890 3.41714 3.59082 3.74857 4.47912 4.78132 4.92963 4.95871 5.10266 5.31276 5.46527 5.49771 5.62693 5.70805 5.83361 6.04636 6.06539 6.15337 6.18212 6.21419 6.26567 6.31463 6.40554 6.44215 6.53151 6.65011 6.74884 6.84227 6.91429 6.92963 7.01955 7.18364 7.31025 7.56509 7.91215 8.00440 8.41900 8.55990 8.80787 9.58893 10.96206 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.004372 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.642837 B = 6403.435134 C = 6753.713691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.201 3.799 4 H 0.031 0.969 5 C -0.620 4.620 6 H 0.048 0.952 7 C 0.028 3.972 8 N -0.905 5.905 9 Si 1.059 2.941 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.674 5.674 14 C 0.151 3.849 15 C -0.160 4.160 16 C -0.131 4.131 17 C -0.050 4.050 18 C -0.093 4.093 19 C -0.113 4.113 20 C -0.045 4.045 21 Cl -0.086 7.086 22 C -0.114 4.114 23 C -0.106 4.106 24 H 0.028 0.972 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.272 0.728 30 H 0.333 0.667 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 8.305 10.363 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.093 3.907 4 H 0.048 0.952 5 C -0.659 4.659 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.540 5.540 9 Si 0.888 3.112 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.305 5.305 14 C 0.059 3.941 15 C -0.219 4.219 16 C -0.188 4.188 17 C -0.050 4.050 18 C -0.111 4.111 19 C -0.131 4.131 20 C -0.072 4.072 21 Cl -0.058 7.058 22 C -0.133 4.133 23 C -0.125 4.125 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.177 7.615 9.497 13.651 hybrid contribution -0.316 0.989 1.008 1.447 sum -6.493 8.604 10.505 15.051 Atomic orbital electron populations 1.21753 0.98449 0.99023 1.00647 1.21556 0.92736 0.99651 1.00594 1.19290 0.94002 0.90369 0.87009 0.95166 1.22488 0.91813 1.46345 1.05222 0.93418 1.25618 1.06386 0.93737 0.92010 1.70811 1.08687 1.46298 1.28250 0.83681 0.75003 0.76515 0.76024 1.20884 1.21702 1.21472 1.61009 1.43696 1.12016 1.13733 1.19676 0.94908 0.89541 0.89956 1.22464 0.98280 0.98289 1.02826 1.21892 0.96631 1.00560 0.99758 1.20184 0.95933 0.93347 0.95584 1.21194 0.98386 1.00953 0.90571 1.21070 1.00085 0.92871 0.99109 1.20872 1.05630 0.94178 0.86503 1.98343 1.93510 1.81431 1.32476 1.20929 1.01441 1.00024 0.90867 1.20948 0.99541 0.94703 0.97315 0.95319 0.92467 0.94596 0.92319 0.93903 0.91714 0.84916 0.90585 0.94299 0.92672 0.92473 0.93317 0.91534 0.83804 0.85361 0.85479 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.85 37.16 0.37 -2.29 16 2 C -0.11 -2.35 5.32 -26.73 -0.14 -2.49 16 3 C 0.20 4.48 0.82 -68.86 -0.06 4.43 16 4 H 0.03 0.74 4.30 -51.93 -0.22 0.51 16 5 C -0.62 -15.66 7.21 -34.44 -0.25 -15.91 16 6 H 0.05 1.22 7.52 -52.49 -0.39 0.83 16 7 C 0.03 0.76 5.12 -17.82 -0.09 0.66 16 8 N -0.90 -25.53 13.00 55.43 0.72 -24.81 16 9 Si 1.06 24.15 29.92 -169.99 -5.09 19.07 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.67 -12.67 4.42 -95.41 -0.42 -13.09 16 14 C 0.15 2.53 0.78 -132.75 -0.10 2.43 16 15 C -0.16 -2.87 7.38 37.16 0.27 -2.60 16 16 C -0.13 -2.10 8.22 37.15 0.31 -1.79 16 17 C -0.05 -0.74 4.77 -104.62 -0.50 -1.24 16 18 C -0.09 -1.32 9.11 -39.59 -0.36 -1.69 16 19 C -0.11 -1.45 9.83 -39.55 -0.39 -1.84 16 20 C -0.05 -0.58 6.32 -39.49 -0.25 -0.83 16 21 Cl -0.09 -0.99 28.96 -51.86 -1.50 -2.49 16 22 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 16 23 C -0.11 -1.40 8.66 -39.59 -0.34 -1.75 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.04 7.61 -51.93 -0.40 0.65 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.44 6.44 -51.93 -0.33 1.11 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.27 7.61 6.19 -40.82 -0.25 7.36 16 30 H 0.33 6.39 6.65 -39.29 -0.26 6.13 16 31 H 0.08 1.59 6.56 -51.93 -0.34 1.25 16 32 H 0.04 0.60 7.17 -51.93 -0.37 0.23 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.67 7.47 -51.93 -0.39 0.29 16 36 H 0.07 1.19 6.18 -51.93 -0.32 0.87 16 37 H 0.14 2.08 6.32 -52.49 -0.33 1.75 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.13 1.51 7.09 -52.49 -0.37 1.14 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -26.28 327.17 -9.03 -35.31 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.74 Total: 7.78 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -1.93 Total: -26.70 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.30 Total: -37.90 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.09 Total: 19.07 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.28 -9.03 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.131 kcal (2) G-P(sol) polarization free energy of solvation -26.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds