Wall clock time and date at job start Tue Mar 31 2020 05:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47019 * 2 1 4 4 H 1.08999 * 109.46720 * 304.50912 * 3 2 1 5 5 C 1.50698 * 109.47082 * 184.51232 * 3 2 1 6 6 H 1.07998 * 120.00026 * 244.50585 * 5 3 2 7 7 C 1.37881 * 120.00118 * 64.50268 * 5 3 2 8 8 N 1.31512 * 120.00023 * 11.70721 * 7 5 3 9 9 Si 1.86804 * 119.99991 * 191.70493 * 7 5 3 10 10 H 1.48500 * 109.46901 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47350 * 300.00496 * 9 7 5 12 12 H 1.48507 * 109.46816 * 60.00343 * 9 7 5 13 13 N 1.46898 * 109.47261 * 64.50937 * 3 2 1 14 14 C 1.46903 * 111.00086 * 219.80951 * 13 3 2 15 15 C 1.53003 * 109.46731 * 303.70090 * 14 13 3 16 16 C 1.52994 * 109.47156 * 63.69709 * 14 13 3 17 17 C 1.50700 * 109.47286 * 183.70233 * 14 13 3 18 18 C 1.38245 * 119.98283 * 359.72103 * 17 14 13 19 19 C 1.38219 * 120.00909 * 179.72960 * 18 17 14 20 20 C 1.38352 * 119.98721 * 0.54832 * 19 18 17 21 21 Cl 1.73599 * 120.01419 * 179.70595 * 20 19 18 22 22 C 1.38359 * 119.97309 * 359.72612 * 20 19 18 23 23 C 1.38213 * 119.98386 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47400 * 184.64304 * 1 2 3 25 25 H 1.08996 * 109.47511 * 304.64896 * 1 2 3 26 26 H 1.09004 * 109.47206 * 64.64376 * 1 2 3 27 27 H 1.08994 * 109.47720 * 240.00013 * 2 1 3 28 28 H 1.09004 * 109.47056 * 119.99518 * 2 1 3 29 29 H 0.96993 * 119.99953 * 357.33974 * 8 7 5 30 30 H 1.00902 * 110.99598 * 95.85875 * 13 3 2 31 31 H 1.08999 * 109.47497 * 66.70841 * 15 14 13 32 32 H 1.09001 * 109.47019 * 186.70651 * 15 14 13 33 33 H 1.08997 * 109.47194 * 306.70132 * 15 14 13 34 34 H 1.09006 * 109.46948 * 62.26801 * 16 14 13 35 35 H 1.08996 * 109.47369 * 182.26423 * 16 14 13 36 36 H 1.09001 * 109.47164 * 302.26847 * 16 14 13 37 37 H 1.08001 * 119.99456 * 0.02562 * 18 17 14 38 38 H 1.08001 * 120.00679 * 180.27543 * 19 18 17 39 39 H 1.07991 * 120.00897 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.99313 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4440 -0.1118 6 1 4.1443 1.8249 0.7003 7 6 4.1499 0.9591 -1.2508 8 7 3.4315 0.7113 -2.3242 9 14 5.9928 0.6543 -1.2694 10 1 6.3953 0.1363 -2.6017 11 1 6.7078 1.9266 -0.9957 12 1 6.3400 -0.3432 -0.2255 13 7 1.6412 2.1029 1.2501 14 6 1.2246 3.4898 1.0033 15 6 2.3556 4.2448 0.3019 16 6 -0.0212 3.4978 0.1153 17 6 0.9107 4.1612 2.3155 18 6 1.0332 3.4567 3.4986 19 6 0.7507 4.0736 4.7029 20 6 0.3345 5.3929 4.7231 21 17 -0.0278 6.1660 6.2346 22 6 0.2066 6.0956 3.5382 23 6 0.4953 5.4795 2.3351 24 1 -0.3634 -1.0242 0.0832 25 1 -0.3634 0.5842 0.8454 26 1 -0.3634 0.4401 -0.9287 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.4695 0.8329 -2.3026 30 1 2.3838 2.0644 1.9322 31 1 2.5023 3.8336 -0.6968 32 1 2.0950 5.3004 0.2255 33 1 3.2751 4.1384 0.8774 34 1 -0.8388 2.9948 0.6320 35 1 -0.3068 4.5272 -0.1009 36 1 0.1942 2.9768 -0.8176 37 1 1.3542 2.4257 3.4824 38 1 0.8507 3.5246 5.6275 39 1 -0.1186 7.1253 3.5533 40 1 0.3952 6.0278 1.4100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:08 Heat of formation + Delta-G solvation = -8.273767 kcal Electronic energy + Delta-G solvation = -20446.934012 eV Core-core repulsion = 17479.210006 eV Total energy + Delta-G solvation = -2967.724006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94949 -38.83624 -37.36100 -35.73316 -33.46680 -32.20408 -31.26557 -30.12071 -28.13108 -27.49264 -24.95352 -23.90961 -23.47523 -21.63644 -20.18719 -19.22228 -18.14902 -16.97890 -16.27946 -15.72844 -15.63684 -15.53990 -15.27706 -14.69652 -14.59140 -14.46533 -14.07735 -13.96884 -13.74246 -13.50018 -13.14936 -12.85153 -12.74994 -12.51718 -12.41894 -12.36305 -12.21636 -12.06182 -11.98308 -11.78024 -11.65184 -11.51957 -11.28983 -10.76173 -10.26247 -9.94225 -9.49309 -9.06034 -8.45333 -6.21698 0.21372 0.39203 1.18162 1.53023 1.58620 1.76983 2.58395 2.70441 3.24716 3.46300 3.74976 3.92251 4.01421 4.20178 4.32412 4.45450 4.48034 4.54636 4.61850 4.70420 4.76083 4.78997 4.88570 4.92287 4.98300 5.05165 5.08339 5.22434 5.25780 5.31347 5.36231 5.43180 5.50180 5.52323 5.70318 5.77217 5.88322 6.03513 6.12643 6.61799 6.65913 6.88599 7.55902 8.85468 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.004372 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.642837 B = 6403.435134 C = 6753.713691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C 0.210 3.790 4 H 0.012 0.988 5 C -0.617 4.617 6 H 0.041 0.959 7 C -0.019 4.019 8 N -0.932 5.932 9 Si 1.099 2.901 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.276 1.276 13 N -0.664 5.664 14 C 0.153 3.847 15 C -0.150 4.150 16 C -0.126 4.126 17 C -0.064 4.064 18 C -0.103 4.103 19 C -0.113 4.113 20 C -0.049 4.049 21 Cl -0.074 7.074 22 C -0.110 4.110 23 C -0.106 4.106 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.027 0.973 28 H 0.037 0.963 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 9.666 12.078 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.101 3.899 4 H 0.030 0.970 5 C -0.656 4.656 6 H 0.059 0.941 7 C -0.219 4.219 8 N -0.570 5.570 9 Si 0.923 3.077 10 H -0.215 1.215 11 H -0.204 1.204 12 H -0.201 1.201 13 N -0.294 5.294 14 C 0.061 3.939 15 C -0.209 4.209 16 C -0.183 4.183 17 C -0.065 4.065 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.075 4.075 21 Cl -0.045 7.045 22 C -0.128 4.128 23 C -0.125 4.125 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.874 8.988 11.238 15.947 hybrid contribution -0.140 0.643 0.569 0.870 sum -7.014 9.631 11.806 16.773 Atomic orbital electron populations 1.21603 0.95747 1.00311 1.00855 1.21432 0.95121 0.98848 0.98727 1.19052 0.92215 0.90744 0.87884 0.97034 1.22792 0.93567 1.44852 1.04418 0.94095 1.26735 1.09491 0.93663 0.92014 1.70906 1.08241 1.48577 1.29231 0.83141 0.71428 0.77141 0.75944 1.21522 1.20380 1.20133 1.60957 1.42994 1.13627 1.11828 1.19687 0.94596 0.88144 0.91457 1.22336 0.98218 0.99975 1.00389 1.21841 0.96289 1.01854 0.98333 1.19992 0.97828 0.94269 0.94379 1.21164 0.99077 1.00812 0.91077 1.21204 0.99592 0.93230 0.99150 1.21029 1.05026 0.94190 0.87301 1.98352 1.93353 1.81118 1.31677 1.21183 1.00429 1.01006 0.90228 1.21089 0.98986 0.93933 0.98456 0.93562 0.91644 0.94795 0.95394 0.94407 0.92842 0.85177 0.94274 0.91593 0.94291 0.92107 0.90860 0.94026 0.84575 0.83879 0.83156 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.85 71.98 0.71 -4.04 16 2 C -0.10 -4.59 5.32 30.59 0.16 -4.43 16 3 C 0.21 9.58 0.82 44.17 0.04 9.61 16 4 H 0.01 0.60 4.30 -2.39 -0.01 0.59 16 5 C -0.62 -31.89 7.21 25.60 0.18 -31.70 16 6 H 0.04 2.13 7.52 -2.91 -0.02 2.11 16 7 C -0.02 -1.02 5.12 84.66 0.43 -0.58 16 8 N -0.93 -54.24 13.00 21.45 0.28 -53.96 16 9 Si 1.10 49.19 29.92 68.60 2.05 51.24 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 13 N -0.66 -25.07 4.42 -455.78 -2.01 -27.08 16 14 C 0.15 5.02 0.78 2.78 0.00 5.03 16 15 C -0.15 -5.39 7.38 71.98 0.53 -4.86 16 16 C -0.13 -3.92 8.22 71.98 0.59 -3.33 16 17 C -0.06 -1.80 4.77 -19.86 -0.09 -1.89 16 18 C -0.10 -2.79 9.11 22.27 0.20 -2.59 16 19 C -0.11 -2.67 9.83 22.29 0.22 -2.45 16 20 C -0.05 -1.10 6.32 22.33 0.14 -0.96 16 21 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 22 C -0.11 -2.34 9.83 22.29 0.22 -2.12 16 23 C -0.11 -2.50 8.66 22.26 0.19 -2.31 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 2.31 7.61 -2.39 -0.02 2.30 16 26 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.03 1.41 6.44 -2.39 -0.02 1.39 16 28 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.26 15.29 6.19 -92.71 -0.57 14.71 16 30 H 0.33 12.77 6.65 -89.69 -0.60 12.17 16 31 H 0.04 1.67 6.56 -2.39 -0.02 1.66 16 32 H 0.07 1.95 7.17 -2.39 -0.02 1.93 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.07 1.89 7.47 -2.39 -0.02 1.87 16 36 H 0.04 1.50 6.18 -2.39 -0.01 1.49 16 37 H 0.14 3.84 6.32 -2.91 -0.02 3.82 16 38 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.15 2.48 8.06 -2.92 -0.02 2.46 16 40 H 0.14 2.89 7.09 -2.91 -0.02 2.87 16 Total: -1.00 -57.02 327.17 4.41 -52.61 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.64 Total: 25.38 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 3.53 Total: -46.63 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.74 Total: -81.04 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.24 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -57.02 4.41 -52.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.337 kcal (2) G-P(sol) polarization free energy of solvation -57.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds